Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1923 Acer truncatum HOM05D008311 ORTHO05D010526 7.1e-218 760.4 400 100.0
Ciclev10020460m.g Citrus clementina HOM05D008311 ORTHO05D010526 3.7e-142 508.8 389 70.7
GSVIVG01024350001 Vitis vinifera HOM05D008311 ORTHO05D010526 1.4e-136 490.3 437 62.7
Cfa016060 Carpinus fangiana HOM05D008311 ORTHO05D010526 1.2e-135 487.3 446 61.4
Thecc.05G218800 Theobroma cacao HOM05D008311 ORTHO05D010526 2.2e-134 483.0 445 62.2
TAR629G0038 Trochodendron aralioides HOM05D008311 ORTHO05D010526 5.0e-131 471.9 392 63.8
Haze_00388 Corylus avellana HOM05D008311 ORTHO05D010526 5.2e-128 461.8 392 65.1
Dinv29140 Davidia involucrata HOM05D008311 ORTHO05D010526 1.2e-127 460.7 427 61.8
Actinidia08755 Actinidia chinensis HOM05D008311 ORTHO05D010526 2.0e-127 459.9 421 60.1
Aqoxy4G02584 Aquilegia oxysepala HOM05D008311 ORTHO05D010526 8.3e-126 454.5 444 56.8
Duzib128G1797 Durio zibethinus HOM05D008311 ORTHO05D010526 3.5e-124 449.1 418 61.5
Manes.09G128000 Manihot esculenta HOM05D008311 ORTHO05D010526 2.3e-123 446.4 445 56.6
MBI04_g20345_MAGBIO Magnolia biondii HOM05D008311 ORTHO05D010526 3.9e-123 445.7 425 58.1
QL09p022981 Quercus lobata HOM05D008311 ORTHO05D010526 2.5e-122 443.0 528 52.5
Gohir.A08G221662 Gossypium hirsutum HOM05D008311 ORTHO05D010526 2.1e-121 439.9 434 59.9
Nn3g20131 Nelumbo nucifera HOM05D008311 ORTHO05D010526 2.6e-119 433.0 392 59.7
Gohir.D08G241300 Gossypium hirsutum HOM05D008311 ORTHO05D010526 3.7e-118 429.1 433 59.6
MD07G1310100 Malus domestica HOM05D008311 ORTHO05D010526 3.7e-118 429.1 440 56.6
Gorai.004G256700 Gossypium raimondii HOM05D008311 ORTHO05D010526 4.9e-118 428.7 435 59.5
Prupe.2G328000 Prunus persica HOM05D008311 ORTHO05D010526 6.4e-118 428.3 373 62.2
COL.COLO4_15199 Corchorus olitorius HOM05D008311 ORTHO05D010526 1.1e-114 417.5 385 61.3
Eucgr.A02984 Eucalyptus grandis HOM05D008311 ORTHO05D010526 1.1e-112 411.0 390 57.7
CDE11G1038 Ceratophyllum demersum HOM05D008311 ORTHO05D010526 3.4e-111 406.0 395 55.4
Sed0001927 Sechium edule HOM05D008311 ORTHO05D010526 3.4e-111 406.0 408 56.1
CiPaw.05G215000 Carya illinoinensis HOM05D008311 ORTHO05D010526 4.9e-110 402.1 378 62.2
vmacro06529 Vaccinium macrocarpon HOM05D008311 ORTHO05D010526 4.6e-108 395.6 388 56.4
FAN10G1178 Fragaria x ananassa HOM05D008311 ORTHO05D010526 1.3e-107 394.0 395 55.9
CsaV3_2G036620 Cucumis sativus L. HOM05D008311 ORTHO05D010526 1.6e-105 387.1 393 55.0
AUR62028199 Chenopodium quinoa HOM05D008311 ORTHO05D010526 2.0e-103 380.2 396 53.8
ATR0665G332 Amborella trichopoda HOM05D008311 ORTHO05D010526 5.4e-101 372.1 397 52.9
AUR62002082 Chenopodium quinoa HOM05D008311 ORTHO05D010526 2.3e-99 366.7 365 55.6
Lsat_1_v5_gn_8_108920 Lactuca sativa HOM05D008311 ORTHO05D010526 2.3e-99 366.7 399 52.9
ClCG09G017160 Citrullus lanatus HOM05D008311 ORTHO05D010526 6.6e-99 365.2 408 51.7
CDE11G1017 Ceratophyllum demersum HOM05D008311 ORTHO05D010526 3.1e-96 356.3 396 49.2
HPP92_005385 Vanilla planifolia HOM05D008311 ORTHO05D010526 9.3e-93 344.7 397 49.4
DCAR_020420 Daucus carota HOM05D008311 ORTHO05D010526 2.3e-91 340.1 389 49.6
Zm00001eb429910 Zea mays HOM05D008311 ORTHO05D010526 3.0e-91 339.7 383 49.3
THA.LOC104821739 Tarenaya hassleriana HOM05D008311 ORTHO05D010526 4.3e-90 335.9 353 54.1
Os04g0592500 Oryza sativa ssp. japonica HOM05D008311 ORTHO05D010526 1.9e-85 320.5 353 50.7
HPP92_009011 Vanilla planifolia HOM05D008311 ORTHO05D010526 4.6e-84 315.8 417 45.6
RcHm_v2.0_Chr1g0384481 Rosa chinensis HOM05D008311 ORTHO05D010526 2.8e-81 306.6 292 59.6
EL10Ac3g05056 Beta vulgaris HOM05D008311 ORTHO05D010526 1.5e-79 300.8 390 45.9
FAN03G2372 Fragaria x ananassa HOM05D008311 ORTHO05D010526 1.5e-79 300.8 412 46.1
Lj3A885T48 Lonicera japonica HOM05D008311 ORTHO05D010526 2.0e-79 300.4 423 45.2
MELO3C021863.2 Cucumis melo HOM05D008311 ORTHO05D010526 1.1e-69 268.1 291 52.9
Pp3c16_5410 Physcomitrium patens HOM05D008311 ORTHO05D010526 2.2e-62 243.8 400 37.2
Zm00001eb201380 Zea mays HOM05D008311 ORTHO05D010526 1.9e-58 230.7 301 45.2
AagrBONN_evm.TU.Sc2ySwM_117.4008 Anthoceros agrestis HOM05D008311 ORTHO05D010526 1.7e-54 217.6 354 37.9
Zm00001eb341760 Zea mays HOM05D008311 ORTHO05D010526 6.5e-46 189.1 257 42.0
SEGI_24543 Sequoiadendron giganteum HOM05D008311 ORTHO05D010526 3.9e-43 179.9 259 42.9
SEGI_12661 Sequoiadendron giganteum HOM05D008311 ORTHO05D010526 2.0e-31 141.0 165 50.3
Zm00001eb072300 Zea mays HOM05D008311 ORTHO05D010526 3.5e-31 140.2 153 51.0
SEGI_38800 Sequoiadendron giganteum HOM05D008311 ORTHO05D010526 1.2e-23 115.2 124 46.8
CSS0045669 Camellia sinensis var. sinensis HOM05D008311 ORTHO05D010526 3.0e-19 100.5 99 52.5
Potri.013G079301 Populus trichocarpa HOM05D008311 ORTHO05D010526 2.3e-14 84.3 61 72.1
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 3.8e-14 83.6 68 58.8
SEGI_19325 Sequoiadendron giganteum HOM05D008311 ORTHO05D010526 4.7e-12 76.6 118 42.4
Zm00001eb207330 Zea mays HOM05D008311 ORTHO05D010526 6.8e-11 72.8 75 52.0
Dinv07670 Davidia involucrata HOM05D008311 ORTHO05D183374 1.8e-08 64.7 51 66.7


User provided reference genes

Program Settings