Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 2.9e-47 191.4 88 100.0
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 3.8e-39 164.5 87 85.1
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.6e-37 159.1 85 83.5
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 1.6e-37 159.1 85 82.4
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 2.1e-37 158.7 85 81.2
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 2.7e-37 158.3 91 79.1
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 2.7e-37 158.3 89 80.9
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 3.5e-37 157.9 85 82.4
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 4.6e-37 157.5 91 79.1
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 4.6e-37 157.5 81 87.7
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 6.0e-37 157.1 83 85.5
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 6.0e-37 157.1 83 84.3
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 1.3e-36 156.0 89 80.9
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 1.8e-36 155.6 87 79.3
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 1.8e-36 155.6 83 84.3
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 2.3e-36 155.2 94 76.6
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 3.0e-36 154.8 83 83.1
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 3.0e-36 154.8 80 85.0
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 3.9e-36 154.5 84 81.0
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 3.9e-36 154.5 84 81.0
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 5.1e-36 154.1 83 81.9
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 5.1e-36 154.1 93 77.4
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 5.1e-36 154.1 83 83.1
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 6.7e-36 153.7 86 77.9
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 6.7e-36 153.7 84 82.1
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 1.5e-35 152.5 86 79.1
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 1.5e-35 152.5 79 84.8
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 1.9e-35 152.1 88 78.4
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 1.9e-35 152.1 83 79.5
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 1.9e-35 152.1 81 81.5
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 2.5e-35 151.8 83 80.7
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 2.5e-35 151.8 91 76.9
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 3.3e-35 151.4 90 76.7
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 5.6e-35 150.6 85 76.5
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 5.6e-35 150.6 79 82.3
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 5.6e-35 150.6 88 75.0
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 5.6e-35 150.6 88 75.0
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 5.6e-35 150.6 88 75.0
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 7.4e-35 150.2 78 82.1
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 7.4e-35 150.2 84 78.6
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 9.6e-35 149.8 94 72.3
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 9.6e-35 149.8 82 78.0
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 1.3e-34 149.4 84 79.8
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 1.3e-34 149.4 79 81.0
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 2.1e-34 148.7 84 78.6
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 3.7e-34 147.9 86 75.6
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 4.8e-34 147.5 83 77.1
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 6.2e-34 147.1 80 80.0
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 6.2e-34 147.1 84 77.4
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 6.2e-34 147.1 90 75.6
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 8.1e-34 146.7 86 77.9
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 8.1e-34 146.7 82 76.8
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 1.1e-33 146.4 77 80.5
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 1.4e-33 146.0 80 78.8
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 1.4e-33 146.0 89 75.3
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 1.8e-33 145.6 80 80.0
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 2.4e-33 145.2 80 80.0
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 3.1e-33 144.8 83 78.3
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 5.3e-33 144.1 82 74.4
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 5.3e-33 144.1 80 78.8
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 5.3e-33 144.1 83 74.7
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 6.9e-33 143.7 76 81.6
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 9.0e-33 143.3 78 79.5
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 9.0e-33 143.3 80 78.8
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 9.0e-33 143.3 86 74.4
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 3.4e-32 141.4 79 75.9
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 4.5e-32 141.0 86 74.4
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 5.8e-32 140.6 90 71.1
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 9.9e-32 139.8 92 69.6
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 1.7e-31 139.0 85 71.8
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 2.9e-31 138.3 78 74.4
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 3.8e-31 137.9 85 69.4
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 3.8e-31 137.9 85 70.6
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 3.8e-31 137.9 82 72.0
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 1.1e-30 136.3 84 72.6
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 2.5e-30 135.2 92 67.4
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 4.6e-29 131.0 76 71.1
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 4.3e-27 124.4 130 48.5
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 3.7e-26 121.3 138 48.6
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 1.6e-21 105.9 83 62.7
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 5.7e-19 97.4 76 57.9
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 8.2e-18 93.6 199 32.7
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 3.1e-17 91.7 42 90.5
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 2.6e-16 88.6 43 83.7
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 1.0e-15 86.7 41 90.2
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 1.3e-15 86.3 41 82.9
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 3.2e-14 81.6 42 78.6
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 3.6e-13 78.2 44 77.3
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 6.7e-12 73.9 50 72.0
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 1.1e-11 73.2 44 72.7
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 2.5e-11 72.0 50 68.0
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 1.1e-09 66.6 32 87.5
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 1.1e-09 66.6 40 65.0
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 9.1e-09 63.5 44 63.6
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 5.9e-08 60.8 79 40.5
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 7.7e-08 60.5 79 38.0
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 1.0e-07 60.1 79 39.2
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 1.0e-07 60.1 79 39.2
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 1.0e-07 60.1 79 39.2
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 1.3e-07 59.7 81 35.8
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 2.2e-07 58.9 83 38.6
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 2.9e-07 58.5 81 39.5
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 2.9e-07 58.5 81 39.5
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 3.8e-07 58.2 79 38.0
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 3.8e-07 58.2 84 38.1
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 5.0e-07 57.8 79 36.7
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 5.0e-07 57.8 79 38.0
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 6.5e-07 57.4 79 35.4
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 6.5e-07 57.4 79 38.0
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 6.5e-07 57.4 79 36.7
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 1.1e-06 56.6 79 35.4
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 1.4e-06 56.2 79 35.4
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 1.4e-06 56.2 87 35.6
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.4e-06 56.2 82 36.6
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 1.4e-06 56.2 77 36.4
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 1.4e-06 56.2 79 36.7
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 1.9e-06 55.8 77 35.1
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 1.9e-06 55.8 77 36.4
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 1.9e-06 55.8 79 35.4
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 2.5e-06 55.5 79 35.4
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 2.5e-06 55.5 79 36.7
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 2.5e-06 55.5 79 35.4
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 3.2e-06 55.1 79 35.4
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 3.2e-06 55.1 79 35.4
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 3.2e-06 55.1 79 36.7
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 3.2e-06 55.1 79 36.7
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 3.2e-06 55.1 79 36.7
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 4.2e-06 54.7 79 36.7
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 4.2e-06 54.7 79 36.7
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 4.2e-06 54.7 79 36.7
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 4.2e-06 54.7 79 36.7
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 4.2e-06 54.7 79 36.7
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 4.2e-06 54.7 83 36.1
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 4.2e-06 54.7 83 34.9
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 4.2e-06 54.7 79 36.7
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 4.2e-06 54.7 83 36.1
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 4.2e-06 54.7 79 35.4
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 4.2e-06 54.7 79 36.7
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 5.5e-06 54.3 79 34.2
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 7.2e-06 53.9 79 36.7
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 7.2e-06 53.9 79 35.4
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 9.4e-06 53.5 79 34.2
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 9.4e-06 53.5 79 35.4
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 9.4e-06 53.5 82 31.7


User provided reference genes

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