Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 0.0e+00 1292.7 647 100.0
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 1.6e-256 889.4 650 72.2
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 1.4e-236 823.2 640 67.0
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 1.8e-234 816.2 636 67.1
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.4e-228 796.6 636 65.4
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 9.3e-228 793.9 644 64.8
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 6.0e-227 791.2 636 64.9
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 3.0e-226 788.9 641 64.7
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 3.7e-224 781.9 641 65.1
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 8.2e-224 780.8 637 64.2
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.8e-218 763.1 649 63.5
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.1e-217 760.4 636 62.3
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 5.7e-217 758.1 643 63.3
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 1.3e-216 756.9 642 62.5
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 8.2e-216 754.2 581 68.7
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 1.1e-215 753.8 627 63.5
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 1.4e-215 753.4 638 62.4
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 5.3e-215 751.5 629 63.3
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 3.4e-214 748.8 637 63.6
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 5.5e-212 741.5 640 62.0
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 1.6e-211 740.0 639 60.9
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 2.1e-211 739.6 647 62.8
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 1.0e-210 737.3 632 62.3
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.0e-210 737.3 676 58.3
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 1.4e-210 736.9 640 61.2
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.0e-209 733.0 621 60.4
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 5.7e-209 731.5 626 60.9
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 9.7e-209 730.7 643 61.0
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 5.3e-207 724.9 638 61.0
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 4.5e-206 721.8 638 60.2
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 9.4e-204 714.1 636 60.7
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 2.1e-203 713.0 644 59.2
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 3.6e-203 712.2 632 60.3
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 8.0e-203 711.1 639 59.6
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 1.5e-201 706.8 621 61.4
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.0e-201 706.4 639 59.6
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 4.4e-201 705.3 499 72.9
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 4.4e-201 705.3 630 60.0
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 8.2e-200 701.0 642 59.0
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 1.1e-199 700.7 637 59.7
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 4.1e-199 698.7 632 60.1
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 2.2e-197 693.0 639 59.5
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 6.5e-197 691.4 586 62.8
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 7.2e-196 688.0 643 57.1
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.1e-195 686.4 651 57.3
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.2e-193 680.6 641 58.2
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 2.0e-193 679.9 652 56.9
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.7e-192 676.8 691 55.0
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 1.4e-191 673.7 637 56.2
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 4.5e-190 668.7 641 55.5
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 1.3e-189 667.2 622 57.2
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 3.8e-189 665.6 655 56.2
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 1.6e-187 660.2 650 55.8
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.7e-187 659.4 598 59.5
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 6.1e-187 658.3 633 55.9
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 8.0e-187 657.9 641 55.1
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 1.5e-185 653.7 640 55.9
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 3.4e-185 652.5 637 54.5
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 4.4e-185 652.1 662 55.0
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.3e-184 650.6 562 59.3
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 1.3e-184 650.6 626 56.5
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 6.3e-184 648.3 613 58.4
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 4.5e-182 642.1 645 53.6
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 7.7e-182 641.3 642 55.5
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 6.6e-181 638.3 638 55.0
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 6.6e-181 638.3 535 62.8
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 6.6e-181 638.3 587 58.6
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 1.1e-180 637.5 624 54.6
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 1.1e-180 637.5 643 54.9
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 7.2e-180 634.8 652 55.2
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 7.2e-180 634.8 620 55.6
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 6.1e-179 631.7 623 53.6
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 1.0e-178 630.9 643 55.2
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 5.7e-177 625.2 491 65.4
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 5.7e-177 625.2 643 54.4
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 5.7e-177 625.2 639 54.9
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 9.8e-177 624.4 588 56.3
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 3.7e-176 622.5 544 60.8
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 4.9e-176 622.1 641 53.4
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 6.3e-176 621.7 651 53.6
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.8e-175 620.2 515 63.1
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 2.4e-175 619.8 543 61.0
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 7.8e-174 614.8 640 52.8
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.7e-173 613.6 645 52.6
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 2.9e-173 612.8 624 52.7
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 3.8e-173 612.5 641 54.9
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 5.0e-173 612.1 643 51.8
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 3.3e-172 609.4 650 51.5
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 7.3e-172 608.2 604 56.1
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 4.7e-171 605.5 641 53.7
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.2e-169 600.9 625 52.0
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.5e-169 600.5 633 52.8
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 1.3e-168 597.4 657 52.2
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 2.9e-168 596.3 637 52.6
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 3.7e-168 595.9 643 50.4
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 4.9e-168 595.5 563 56.3
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 4.1e-167 592.4 643 50.2
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 7.0e-167 591.7 647 50.5
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 6.0e-166 588.6 641 51.0
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.3e-165 586.6 712 49.6
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 6.6e-165 585.1 638 50.6
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 9.5e-164 581.3 601 54.2
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 1.1e-162 577.8 645 51.6
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 2.3e-162 576.6 685 48.2
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 1.2e-161 574.3 502 60.0
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 3.4e-161 572.8 642 50.9
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 1.7e-160 570.5 667 48.7
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 9.2e-159 564.7 638 50.0
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 1.6e-158 563.9 639 49.6
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 4.6e-158 562.4 637 49.6
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 4.6e-158 562.4 636 49.2
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 4.6e-158 562.4 637 49.6
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 4.6e-158 562.4 636 49.2
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 4.6e-158 562.4 603 51.2
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 1.3e-157 560.8 637 49.5
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 6.6e-157 558.5 584 52.4
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 4.0e-154 549.3 492 57.1
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.3e-152 544.3 628 52.1
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 1.3e-149 534.3 546 51.8
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 7.3e-148 528.5 638 47.3
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 6.8e-146 521.9 694 46.7
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 2.0e-145 520.4 530 55.1
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 1.3e-144 517.7 529 53.5
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 4.6e-142 509.2 536 53.4
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.8e-139 500.0 420 60.7
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 6.0e-134 482.3 637 46.9
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.4e-127 461.1 495 53.1
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.4e-127 461.1 495 53.1
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 2.1e-123 447.2 473 50.1
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 2.1e-123 447.2 550 48.0
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 1.0e-120 438.3 703 39.3
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 2.5e-119 433.7 488 50.2
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 6.7e-117 425.6 622 44.4
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 8.7e-117 425.2 622 42.1
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 2.6e-113 413.7 641 40.9
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 1.2e-105 388.3 382 53.4
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 1.0e-96 358.6 501 45.1
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 8.8e-77 292.4 515 36.1
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 1.1e-71 275.4 682 32.0
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 2.8e-67 260.8 295 52.9
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.7e-65 254.2 349 42.7
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 9.2e-50 202.6 439 31.0
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 6.8e-45 186.4 195 46.2
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 4.9e-43 180.3 134 67.9
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 2.1e-25 121.7 162 37.0
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 9.0e-21 106.3 64 76.6
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 4.9e-19 100.5 159 42.1
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 9.6e-15 86.3 123 43.1
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-07 62.0 39 69.2
SEGI_38081 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 5.6e-07 60.5 56 50.0
QL04p091051 Quercus lobata HOM05D004604 ORTHO05D013998 4.8e-06 57.4 66 48.5
QL01p024866 Quercus lobata HOM05D004604 ORTHO05D005744 8.1e-06 56.6 66 48.5


User provided reference genes

Program Settings