Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 7.7e-157 557.0 260 100.0
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 5.0e-132 474.6 253 86.6
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 1.1e-131 473.4 244 87.3
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 6.2e-130 467.6 258 84.1
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 3.1e-129 465.3 258 83.3
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 4.0e-129 464.9 256 83.6
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 4.0e-129 464.9 254 83.9
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 2.0e-128 462.6 253 84.2
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 3.4e-128 461.8 255 82.4
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 4.4e-128 461.5 255 81.6
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 5.8e-128 461.1 255 82.0
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 7.5e-128 460.7 253 83.4
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 9.8e-128 460.3 256 82.8
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 2.2e-127 459.1 258 82.2
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 3.7e-127 458.4 253 84.2
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 3.7e-127 458.4 256 81.6
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 4.9e-127 458.0 258 81.4
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 8.3e-127 457.2 253 81.8
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 8.3e-127 457.2 253 81.8
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 8.3e-127 457.2 255 79.6
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 1.1e-126 456.8 255 81.6
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.4e-126 456.4 253 81.8
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 2.4e-126 455.7 255 81.6
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 3.2e-126 455.3 253 82.2
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 7.0e-126 454.1 253 81.8
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 7.0e-126 454.1 254 83.1
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 7.0e-126 454.1 255 82.7
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 7.0e-126 454.1 254 82.3
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 9.2e-126 453.8 255 81.2
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 9.2e-126 453.8 253 81.8
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 9.2e-126 453.8 251 81.3
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.6e-125 453.0 253 81.8
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 3.5e-125 451.8 252 82.1
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 4.6e-125 451.4 255 82.7
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 6.0e-125 451.1 255 82.0
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 1.3e-124 449.9 261 80.1
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 1.7e-124 449.5 255 82.4
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 2.3e-124 449.1 256 78.9
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 3.0e-124 448.7 257 80.9
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 3.9e-124 448.4 257 80.9
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 5.0e-124 448.0 256 81.6
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 1.1e-123 446.8 254 81.1
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 1.5e-123 446.4 242 82.6
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 1.9e-123 446.0 245 81.2
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 3.3e-123 445.3 256 79.3
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 4.3e-123 444.9 259 79.5
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 5.6e-123 444.5 248 83.1
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 7.3e-123 444.1 245 80.8
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 9.5e-123 443.7 255 80.0
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.2e-122 443.4 248 82.7
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 1.6e-122 443.0 245 80.8
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 1.6e-122 443.0 245 80.8
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 2.1e-122 442.6 247 82.6
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 2.8e-122 442.2 261 78.9
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 3.6e-122 441.8 244 79.9
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 3.6e-122 441.8 253 78.3
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 4.7e-122 441.4 251 79.3
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 6.2e-122 441.0 248 82.3
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 8.1e-122 440.7 236 82.6
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 1.1e-121 440.3 244 79.1
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 1.1e-121 440.3 246 81.7
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 1.1e-121 440.3 248 81.5
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 2.3e-121 439.1 256 78.9
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 2.3e-121 439.1 244 79.9
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 3.1e-121 438.7 255 79.2
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 8.9e-121 437.2 255 79.2
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 8.9e-121 437.2 255 79.2
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 4.4e-120 434.9 258 78.3
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 9.8e-120 433.7 241 78.8
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 1.3e-119 433.3 255 78.8
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 1.3e-119 433.3 255 78.8
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 2.2e-119 432.6 232 82.8
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 2.9e-119 432.2 255 77.3
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 6.4e-119 431.0 255 77.3
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.4e-118 429.1 254 76.4
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 2.4e-118 429.1 253 75.9
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 4.1e-118 428.3 235 80.4
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 4.1e-118 428.3 253 75.5
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 9.2e-118 427.2 254 76.8
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 9.2e-118 427.2 244 78.7
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 1.2e-117 426.8 254 76.4
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 2.1e-117 426.0 253 76.7
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.1e-117 426.0 256 76.2
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 3.5e-117 425.2 232 79.7
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 4.6e-117 424.9 258 77.1
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 4.6e-117 424.9 236 78.4
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 6.0e-117 424.5 245 76.3
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 6.0e-117 424.5 254 76.4
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 6.0e-117 424.5 236 79.7
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 7.8e-117 424.1 255 74.9
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 1.0e-116 423.7 252 74.6
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.0e-116 423.7 236 79.7
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 1.3e-116 423.3 243 78.6
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.3e-116 423.3 246 78.0
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 1.3e-116 423.3 256 75.4
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 3.0e-116 422.2 232 78.9
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 5.1e-116 421.4 247 77.3
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 5.1e-116 421.4 254 75.2
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 1.1e-115 420.2 253 74.7
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 1.1e-115 420.2 240 77.9
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.5e-115 419.9 232 78.9
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 1.9e-115 419.5 234 78.6
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 2.5e-115 419.1 239 77.0
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 3.3e-115 418.7 253 75.1
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 4.3e-115 418.3 237 80.6
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 7.3e-115 417.5 258 75.6
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 7.3e-115 417.5 259 75.3
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 9.5e-115 417.2 250 76.8
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 3.6e-114 415.2 244 78.3
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 3.6e-114 415.2 243 76.5
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 4.7e-114 414.8 257 72.8
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 6.2e-114 414.5 236 78.0
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 8.1e-114 414.1 246 74.8
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 1.1e-113 413.7 253 73.9
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 1.1e-113 413.7 240 76.7
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 1.4e-113 413.3 258 72.5
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 1.8e-113 412.9 253 71.9
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 1.8e-113 412.9 254 73.6
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 4.0e-113 411.8 254 73.6
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 1.2e-112 410.2 242 73.1
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 1.2e-112 410.2 252 73.0
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 2.6e-112 409.1 254 73.6
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 3.4e-112 408.7 233 76.8
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 4.4e-112 408.3 225 80.0
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 5.8e-112 407.9 241 76.3
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 5.8e-112 407.9 237 76.4
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 1.3e-111 406.8 247 73.3
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 4.9e-111 404.8 247 73.3
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 8.4e-111 404.1 254 71.7
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 2.4e-110 402.5 244 74.2
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 4.1e-110 401.7 244 73.0
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 9.2e-110 400.6 239 74.1
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.2e-109 400.2 258 70.9
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 1.2e-109 400.2 243 72.8
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 1.0e-108 397.1 254 70.9
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 6.2e-106 387.9 229 75.1
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 1.1e-105 387.1 218 83.5
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.1e-105 387.1 236 72.9
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 2.4e-105 386.0 248 69.4
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 3.1e-105 385.6 234 76.9
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 5.2e-105 384.8 255 69.8
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 2.0e-104 382.9 253 68.8
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 5.3e-97 358.2 232 69.0
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 2.6e-96 355.9 241 64.3
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 7.6e-96 354.4 224 70.1
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 4.6e-93 345.1 245 66.1
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 6.0e-93 344.7 248 62.5
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 7.9e-93 344.4 228 67.1
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 8.7e-92 340.9 248 61.7
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 1.1e-91 340.5 236 64.8
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 1.1e-89 334.0 240 63.8
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 3.1e-81 305.8 183 79.8
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.0e-79 300.8 246 60.2
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 7.1e-78 294.7 158 80.4
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 9.3e-78 294.3 159 81.1
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 2.7e-61 239.6 179 61.5
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 7.9e-53 211.5 257 44.0
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 1.8e-52 210.3 218 46.8
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 2.3e-44 183.3 212 47.6
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 1.3e-39 167.5 96 79.2
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 8.6e-31 138.3 116 57.8
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 5.5e-30 135.6 94 68.1
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 2.5e-22 110.2 63 77.8
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 6.8e-12 75.5 50 56.0
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 1.2e-11 74.7 65 55.4


User provided reference genes

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