Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1861 Acer truncatum HOM05D000183 ORTHO05D000100 3.1e-34 147.9 74 100.0
Atru.chr5.741 Acer truncatum HOM05D000183 ORTHO05D000100 1.4e-26 122.5 75 84.0
Ciclev10021877m.g Citrus clementina HOM05D000183 ORTHO05D000100 4.9e-16 87.4 75 68.0
Duzib138G1536 Durio zibethinus HOM05D000183 ORTHO05D000100 5.4e-15 84.0 71 63.4
TWI23G0962 Tripterygium wilfordii HOM05D000183 ORTHO05D000100 5.4e-15 84.0 76 63.2
Duzib133G0094 Durio zibethinus HOM05D000183 ORTHO05D000100 2.7e-14 81.6 71 62.0
CiPaw.01G079900 Carya illinoinensis HOM05D000183 ORTHO05D000100 7.9e-14 80.1 74 59.5
Potri.014G103000 Populus trichocarpa HOM05D000183 ORTHO05D000100 7.9e-14 80.1 73 60.3
COL.COLO4_06263 Corchorus olitorius HOM05D000183 ORTHO05D000100 2.3e-13 78.6 70 60.0
Thecc.01G336300 Theobroma cacao HOM05D000183 ORTHO05D000100 2.3e-13 78.6 71 60.6
Manes.05G018700 Manihot esculenta HOM05D000183 ORTHO05D000100 3.0e-13 78.2 70 54.3
Potri.002G176300 Populus trichocarpa HOM05D000183 ORTHO05D000100 3.0e-13 78.2 72 61.1
GSVIVG01027407001 Vitis vinifera HOM05D000183 ORTHO05D000100 1.5e-12 75.9 74 54.1
TWI59G1191 Tripterygium wilfordii HOM05D000183 ORTHO05D000100 2.5e-12 75.1 75 60.0
TWI14G0860 Tripterygium wilfordii HOM05D000183 ORTHO05D000100 4.3e-12 74.3 76 56.6
QL08p046520 Quercus lobata HOM05D000183 ORTHO05D000100 9.6e-12 73.2 73 57.5
Gohir.A11G099600 Gossypium hirsutum HOM05D000183 ORTHO05D000100 1.3e-11 72.8 71 53.5
Gohir.D11G104100 Gossypium hirsutum HOM05D000183 ORTHO05D000100 1.3e-11 72.8 71 53.5
Gorai.007G111400 Gossypium raimondii HOM05D000183 ORTHO05D000100 1.3e-11 72.8 71 53.5
Manes.01G242300 Manihot esculenta HOM05D000183 ORTHO05D000100 1.3e-11 72.8 74 56.8
Haze_15708 Corylus avellana HOM05D000183 ORTHO05D000100 1.6e-11 72.4 73 58.9
FvH4_7g17320 Fragaria vesca HOM05D000183 ORTHO05D000100 1.6e-11 72.4 71 57.7
FAN06G2596 Fragaria x ananassa HOM05D000183 ORTHO05D000100 1.6e-11 72.4 71 57.7
FAN10G0493 Fragaria x ananassa HOM05D000183 ORTHO05D000100 1.6e-11 72.4 71 57.7
FAN10G1020 Fragaria x ananassa HOM05D000183 ORTHO05D000100 1.6e-11 72.4 71 57.7
FAN03G1073 Fragaria x ananassa HOM05D000183 ORTHO05D000100 2.1e-11 72.0 71 57.7
Peaxi162Scf00087g00149 Petunia axillaris HOM05D000183 ORTHO05D000100 2.1e-11 72.0 72 50.0
Sabra14G0075800 Salix brachista HOM05D000183 ORTHO05D000100 2.1e-11 72.0 74 58.1
RcHm_v2.0_Chr1g0360751 Rosa chinensis HOM05D000183 ORTHO05D000100 3.7e-11 71.2 71 57.7
FAN01G3052 Fragaria x ananassa HOM05D000183 ORTHO05D000100 6.2e-11 70.5 71 56.3
MD07G1156200 Malus domestica HOM05D000183 ORTHO05D000100 6.2e-11 70.5 75 54.7
Dinv32629 Davidia involucrata HOM05D000183 ORTHO05D000100 8.1e-11 70.1 71 52.1
FAN06G4893 Fragaria x ananassa HOM05D000183 ORTHO05D000100 8.1e-11 70.1 71 56.3
Medtr8g026960 Medicago truncatula HOM05D000183 ORTHO05D000100 1.1e-10 69.7 74 54.1
TPR.G15905 Trifolium pratense HOM05D000183 ORTHO05D000100 1.8e-10 68.9 74 52.7
VMungo0331G0936 Vigna mungo HOM05D000183 ORTHO05D000100 1.8e-10 68.9 73 54.8
Lalb_Chr10g0100771 Lupinus albus HOM05D000183 ORTHO05D000100 4.0e-10 67.8 74 52.7
Phvul.010G117200 Phaseolus vulgaris HOM05D000183 ORTHO05D000100 4.0e-10 67.8 73 53.4
Cfa003757 Carpinus fangiana HOM05D000183 ORTHO05D000100 5.3e-10 67.4 73 56.2
Psat4g216920 Pisum sativum HOM05D000183 ORTHO05D000100 6.9e-10 67.0 74 51.4
Nitab4.5_0004955g0020 Nicotiana tabacum HOM05D000183 ORTHO05D000100 2.0e-09 65.5 68 55.9
Lalb_Chr17g0342891 Lupinus albus HOM05D000183 ORTHO05D000100 1.0e-08 63.2 74 50.0
Gohir.A07G135300 Gossypium hirsutum HOM05D000183 ORTHO05D000100 1.3e-08 62.8 71 47.9
Prupe.2G194400 Prunus persica HOM05D000183 ORTHO05D000100 2.2e-08 62.0 72 54.2
CSS0049693 Camellia sinensis var. sinensis HOM05D000183 ORTHO05D000100 3.8e-08 61.2 74 47.3
Glyma.16G021000 Glycine max HOM05D000183 ORTHO05D000100 3.8e-08 61.2 71 54.9
Lj3g0007087 Lotus japonicus HOM05D000183 ORTHO05D000100 3.8e-08 61.2 74 47.3
Gohir.D07G140200 Gossypium hirsutum HOM05D000183 ORTHO05D000100 4.9e-08 60.8 71 46.5
Gorai.001G152200 Gossypium raimondii HOM05D000183 ORTHO05D000100 4.9e-08 60.8 71 46.5
Ca_02260_v3 Cicer arietinum L. HOM05D000183 ORTHO05D000100 1.4e-07 59.3 76 52.6
Gohir.D12G118100 Gossypium hirsutum HOM05D000183 ORTHO05D000100 1.4e-07 59.3 71 50.7
Gohir.A12G114800 Gossypium hirsutum HOM05D000183 ORTHO05D000100 1.9e-07 58.9 71 50.7
Gorai.008G128000 Gossypium raimondii HOM05D000183 ORTHO05D000100 1.9e-07 58.9 71 50.7
MD00G1036300 Malus domestica HOM05D000183 ORTHO05D000100 1.9e-07 58.9 75 49.3
Glyma.07G052100 Glycine max HOM05D000183 ORTHO05D000100 2.5e-07 58.5 70 50.0
THA.LOC104817390 Tarenaya hassleriana HOM05D000183 ORTHO05D000100 2.5e-07 58.5 59 57.6
CANSAT56G3792 Cannabis sativa HOM05D000183 ORTHO05D000100 3.2e-07 58.2 83 53.0
THA.LOC104827637 Tarenaya hassleriana HOM05D000183 ORTHO05D000100 5.5e-07 57.4 57 54.4
Lj9A602T29 Lonicera japonica HOM05D000183 ORTHO05D000100 9.3e-07 56.6 70 48.6
Rhsim01G0177300 Rhododendron simsii HOM05D000183 ORTHO05D000100 9.3e-07 56.6 74 41.9
CAN.G1045.47 Capsicum annuum HOM05D000183 ORTHO05D000100 2.7e-06 55.1 71 45.1
TAR375G0348 Trochodendron aralioides HOM05D000183 ORTHO05D000100 4.6e-06 54.3 74 41.9
AUR62004541 Chenopodium quinoa HOM05D000183 ORTHO05D000100 7.9e-06 53.5 69 46.4


User provided reference genes

Program Settings