Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 0.0e+00 1153.3 681 100.0
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 7.5e-228 794.3 683 71.9
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 1.0e-160 571.2 694 55.5
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 1.9e-154 550.4 685 52.3
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 7.2e-154 548.5 681 55.8
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 5.3e-149 532.3 685 50.1
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 2.6e-148 530.0 673 53.9
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 5.9e-148 528.9 687 55.2
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 2.3e-144 516.9 684 50.9
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 3.3e-143 513.1 690 52.8
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 9.7e-143 511.5 695 49.4
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 3.7e-142 509.6 702 53.1
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 1.2e-140 504.6 706 47.9
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 4.5e-140 502.7 687 50.9
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 1.3e-139 501.1 672 51.6
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 2.5e-138 496.9 683 50.4
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 2.3e-136 490.3 683 49.9
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 4.0e-136 489.6 687 52.4
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 5.7e-135 485.7 717 46.3
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 1.1e-133 481.5 705 49.1
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 9.1e-133 478.4 707 52.1
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 7.7e-132 475.3 624 47.9
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 2.9e-131 473.4 682 47.4
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 6.5e-131 472.2 692 51.6
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 1.9e-130 470.7 692 51.9
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 1.0e-128 464.9 691 47.8
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 1.0e-128 464.9 641 47.0
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 1.8e-128 464.2 698 46.8
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 2.3e-128 463.8 710 48.9
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 3.0e-128 463.4 690 47.1
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 6.8e-128 462.2 689 51.2
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 1.5e-127 461.1 696 46.1
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 2.6e-127 460.3 696 50.4
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 5.7e-127 459.1 714 46.1
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 2.2e-126 457.2 684 48.5
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 1.4e-125 454.5 613 50.6
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 1.2e-124 451.4 687 48.5
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 2.3e-123 447.2 698 46.7
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 8.6e-123 445.3 715 45.7
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 2.5e-122 443.7 717 44.5
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 2.5e-122 443.7 679 49.2
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 7.3e-122 442.2 690 46.7
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 1.6e-121 441.0 703 49.5
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 2.9e-118 430.3 699 45.5
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 3.7e-118 429.9 557 53.0
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 4.9e-118 429.5 615 48.8
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 3.2e-117 426.8 673 46.4
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 5.4e-117 426.0 681 47.3
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 4.6e-116 422.9 683 48.2
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 1.1e-114 418.3 689 47.5
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 2.5e-114 417.2 701 44.2
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 4.3e-114 416.4 706 47.6
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 2.1e-113 414.1 688 47.2
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 1.4e-112 411.4 705 44.8
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 1.4e-112 411.4 689 44.3
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 5.2e-112 409.5 655 48.1
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 4.4e-111 406.4 685 43.4
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 4.4e-111 406.4 682 44.9
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 3.7e-110 403.3 688 46.4
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 1.9e-109 401.0 650 42.8
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 7.8e-108 395.6 689 45.4
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 1.7e-107 394.4 721 42.9
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 2.3e-107 394.0 699 46.5
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 3.3e-106 390.2 673 46.7
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 2.8e-105 387.1 678 45.9
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 3.6e-105 386.7 680 44.9
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 5.2e-104 382.9 598 48.0
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 8.9e-104 382.1 734 41.6
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 7.5e-103 379.0 684 43.7
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 9.2e-101 372.1 681 45.7
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 1.6e-97 361.3 688 44.6
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 4.7e-97 359.8 679 44.9
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 8.1e-97 359.0 672 44.2
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 1.5e-95 354.8 679 45.4
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 3.4e-95 353.6 698 40.8
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 5.8e-95 352.8 701 41.7
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 9.9e-95 352.1 620 44.8
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 4.1e-93 346.7 686 42.0
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 6.6e-91 339.3 589 44.5
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 1.1e-90 338.6 664 42.5
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.5e-90 338.2 683 41.7
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 3.6e-89 333.6 667 45.7
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 5.2e-88 329.7 667 45.4
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 5.2e-88 329.7 691 37.2
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 6.9e-88 329.3 560 44.3
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 2.0e-87 327.8 667 45.3
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 4.2e-85 320.1 667 44.8
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 5.4e-85 319.7 665 42.1
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 2.7e-84 317.4 667 43.2
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 1.3e-83 315.1 578 42.4
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 2.5e-82 310.8 703 41.0
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 6.2e-81 306.2 682 43.8
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 8.1e-81 305.8 683 41.1
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.1e-77 295.4 673 40.0
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 3.2e-77 293.9 367 53.1
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.7e-76 290.8 473 43.8
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 3.5e-76 290.4 680 41.9
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 5.1e-75 286.6 715 39.6
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 6.7e-75 286.2 525 44.4
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 1.3e-73 282.0 706 35.6
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 2.1e-73 281.2 685 37.2
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 1.1e-72 278.9 613 40.9
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 2.4e-72 277.7 464 42.5
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 2.2e-70 271.2 502 41.2
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 1.0e-67 262.3 720 35.4
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 1.9e-66 258.1 452 41.6
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 9.6e-66 255.8 717 35.0
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 4.8e-65 253.4 683 36.6
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 5.7e-58 229.9 261 52.5
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 2.5e-53 214.5 718 32.3
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 6.7e-51 206.5 627 34.8
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 6.7e-43 179.9 232 53.0
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.1e-42 179.1 357 38.9
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 3.3e-42 177.6 204 52.5
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 2.2e-38 164.9 666 33.0
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 3.6e-36 157.5 316 40.8
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 1.7e-33 148.7 379 39.3
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 3.1e-32 144.4 131 59.5
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 4.1e-32 144.1 605 32.9
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 1.8e-27 128.6 175 52.0
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 3.0e-27 127.9 689 30.6
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 2.0e-26 125.2 337 36.8
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 6.3e-25 120.2 162 47.5
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 9.4e-21 106.3 637 30.1
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 1.0e-19 102.8 637 26.5
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 4.0e-19 100.9 146 41.1
MELO3C003738.2 Cucumis melo HOM05D005724 ORTHO05D006636 2.0e-15 88.6 128 48.4
MELO3C017820.2 Cucumis melo HOM05D005724 ORTHO05D006636 7.7e-15 86.7 128 47.7
MD04G1246500 Malus domestica HOM05D005724 ORTHO05D006636 1.0e-14 86.3 132 45.5
AagrBONN_evm.TU.Sc2ySwM_344.5238 Anthoceros agrestis HOM05D005724 ORTHO05D006636 8.6e-14 83.2 599 26.2
Nitab4.5_0005621g0090 Nicotiana tabacum HOM05D005724 ORTHO05D006636 5.5e-13 80.5 131 45.0
PSO339G2657 Papaver somniferum HOM05D005724 ORTHO05D006636 1.2e-12 79.3 183 39.3
Cfa025790 Carpinus fangiana HOM05D005724 ORTHO05D006636 1.7e-09 68.9 600 24.5


User provided reference genes

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