Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 1.1e-84 316.6 160 100.0
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 5.4e-76 287.7 143 100.0
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 5.4e-68 261.2 143 86.7
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 2.3e-66 255.8 143 86.0
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 3.0e-66 255.4 143 85.3
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 3.9e-66 255.0 143 85.3
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 1.1e-65 253.4 143 84.6
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 1.1e-65 253.4 143 84.6
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 1.5e-65 253.1 143 85.3
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 1.9e-65 252.7 143 83.9
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 3.3e-65 251.9 143 84.6
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 5.6e-65 251.1 143 83.9
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 1.2e-64 250.0 143 82.5
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 2.1e-64 249.2 143 81.8
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 6.2e-64 247.7 143 81.8
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 1.1e-63 246.9 143 81.8
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 1.1e-63 246.9 143 81.1
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 1.4e-63 246.5 143 80.4
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 2.3e-63 245.7 143 80.4
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 3.1e-63 245.4 143 80.4
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 3.1e-63 245.4 143 83.2
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 6.8e-63 244.2 143 80.4
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 8.9e-63 243.8 143 80.4
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.5e-62 243.0 143 83.2
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 1.5e-62 243.0 143 79.7
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 2.0e-62 242.7 143 82.5
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 3.4e-62 241.9 143 79.0
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 3.4e-62 241.9 143 79.0
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 3.4e-62 241.9 143 79.7
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 7.5e-62 240.7 143 78.3
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 7.5e-62 240.7 143 82.5
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 7.5e-62 240.7 163 74.2
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 7.5e-62 240.7 143 81.1
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 1.3e-61 240.0 143 79.0
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 1.7e-61 239.6 143 78.3
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 2.2e-61 239.2 143 79.0
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 3.7e-61 238.4 141 78.7
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 4.9e-61 238.0 143 80.4
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 8.3e-61 237.3 143 78.3
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 8.3e-61 237.3 143 79.0
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 2.4e-60 235.7 143 75.5
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 2.4e-60 235.7 143 76.2
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 2.4e-60 235.7 143 77.6
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 1.2e-59 233.4 143 75.5
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 1.6e-59 233.0 143 75.5
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 1.6e-59 233.0 143 75.5
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 1.6e-59 233.0 143 75.5
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 1.6e-59 233.0 143 75.5
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 2.1e-59 232.6 143 75.5
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 2.7e-59 232.3 143 76.2
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 2.7e-59 232.3 144 77.8
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 4.6e-59 231.5 143 74.8
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 6.0e-59 231.1 143 75.5
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 6.0e-59 231.1 143 74.8
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 6.0e-59 231.1 143 76.2
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 6.0e-59 231.1 144 73.6
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 1.0e-58 230.3 143 74.8
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 1.7e-58 229.6 143 76.9
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 3.0e-58 228.8 143 76.9
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 3.0e-58 228.8 143 76.2
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 5.1e-58 228.0 143 74.8
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 8.6e-58 227.3 143 75.5
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 8.6e-58 227.3 143 74.1
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 8.6e-58 227.3 143 72.0
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 1.1e-57 226.9 143 75.5
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.1e-57 226.9 143 74.1
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.1e-57 226.9 143 74.1
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 1.1e-57 226.9 143 74.8
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 1.1e-57 226.9 143 74.8
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 1.1e-57 226.9 143 74.8
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 2.5e-57 225.7 143 72.7
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 2.5e-57 225.7 142 72.5
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 3.3e-57 225.3 143 75.5
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 4.3e-57 224.9 143 74.1
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 4.3e-57 224.9 143 72.7
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 2.1e-56 222.6 143 72.7
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 2.1e-56 222.6 143 73.4
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 2.8e-56 222.2 143 72.7
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 2.8e-56 222.2 143 72.0
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 2.8e-56 222.2 143 72.0
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 6.2e-56 221.1 143 72.7
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 6.2e-56 221.1 143 72.7
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 6.2e-56 221.1 125 84.0
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 8.1e-56 220.7 143 72.7
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 8.1e-56 220.7 143 69.9
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 1.1e-55 220.3 143 72.7
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 3.1e-55 218.8 143 71.3
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 5.2e-55 218.0 167 65.3
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 5.2e-55 218.0 143 73.4
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 6.8e-55 217.6 143 70.6
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 6.8e-55 217.6 143 70.6
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 6.8e-55 217.6 143 70.6
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 6.8e-55 217.6 143 71.3
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 1.2e-54 216.9 122 82.8
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 1.2e-54 216.9 143 71.3
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 1.5e-54 216.5 143 72.7
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 2.0e-54 216.1 143 72.0
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 7.5e-54 214.2 143 72.0
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 9.9e-54 213.8 143 70.6
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 1.7e-53 213.0 143 71.3
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 2.2e-53 212.6 143 69.2
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 2.9e-53 212.2 143 69.2
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 1.4e-52 209.9 143 69.9
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 1.9e-52 209.5 143 69.9
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 7.8e-51 204.1 143 67.8
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 7.8e-51 204.1 122 79.5
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 1.7e-50 203.0 165 61.2
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 2.3e-50 202.6 122 76.2
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 6.6e-50 201.1 143 66.4
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 8.6e-50 200.7 143 66.4
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 1.5e-49 199.9 143 66.4
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 4.3e-49 198.4 144 66.0
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 5.6e-49 198.0 143 66.4
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 8.1e-48 194.1 115 78.3
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 2.6e-46 189.1 116 80.2
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 9.9e-46 187.2 208 48.6
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 5.1e-42 174.9 142 57.0
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 6.6e-42 174.5 151 58.3
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 1.6e-40 169.9 94 85.1
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 4.7e-40 168.3 145 57.9
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 1.1e-39 167.2 94 80.9
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 3.1e-39 165.6 143 53.1
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 2.6e-38 162.5 94 77.7
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 2.9e-37 159.1 129 52.7
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 3.8e-37 158.7 129 55.8
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 1.9e-36 156.4 93 78.5
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 3.5e-35 152.1 134 52.2
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 2.5e-33 146.0 139 54.7
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 7.1e-28 127.9 85 65.9
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 1.3e-24 117.1 96 52.1
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 2.8e-24 115.9 75 66.7
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 3.7e-24 115.5 66 77.3
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 7.1e-20 101.3 129 41.1
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 2.1e-19 99.8 53 86.8
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 4.6e-19 98.6 74 62.2
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.0e-18 97.4 55 81.8
PRCOL_00004780 Prasinoderma coloniale HOM05D005031 ORTHO05D006098 2.3e-18 96.3 134 35.8
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 3.7e-16 89.0 54 72.2
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 4.0e-15 85.5 48 83.3
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 3.2e-12 75.9 38 86.8
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 1.2e-11 73.9 131 32.8
Rhsim03G0261000 Rhododendron simsii HOM05D005031 ORTHO05D006098 2.3e-10 69.7 76 47.4
CARHR184590 Cardamine hirsuta HOM05D005031 ORTHO05D006098 6.9e-07 58.2 48 58.3
MELO3C033061.2 Cucumis melo HOM05D005031 ORTHO05D006098 5.9e-06 55.1 31 80.6


User provided reference genes

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