Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 1.0e-147 526.9 305 100.0
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 1.4e-117 426.8 305 75.1
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 2.3e-112 409.5 305 73.4
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 3.4e-111 405.6 308 71.4
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 4.4e-111 405.2 310 71.0
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 9.8e-111 404.1 310 71.0
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 2.2e-110 402.9 305 70.8
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 1.1e-109 400.6 305 73.1
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 2.0e-108 396.4 232 85.3
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 1.7e-107 393.3 228 85.5
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 5.0e-107 391.7 312 68.3
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 8.6e-107 391.0 230 84.8
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 1.1e-106 390.6 303 70.3
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 2.5e-106 389.4 221 87.3
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 4.3e-106 388.7 302 71.5
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 5.6e-106 388.3 232 84.1
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 7.3e-106 387.9 221 86.9
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 7.3e-106 387.9 221 86.9
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 1.2e-105 387.1 311 69.8
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 2.1e-105 386.3 223 87.0
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 3.6e-105 385.6 221 86.4
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 8.0e-105 384.4 226 85.4
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 1.0e-104 384.0 214 88.3
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 4.0e-104 382.1 226 85.4
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 4.0e-104 382.1 226 85.0
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 5.2e-104 381.7 228 84.2
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 5.2e-104 381.7 228 84.2
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 5.2e-104 381.7 221 86.9
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 5.2e-104 381.7 301 68.4
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 1.5e-103 380.2 278 75.5
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 4.4e-103 378.6 214 86.9
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 5.8e-103 378.3 221 86.4
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 9.8e-103 377.5 300 68.3
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 1.3e-102 377.1 225 84.4
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 2.2e-102 376.3 233 83.3
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 2.2e-102 376.3 225 82.2
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 3.7e-102 375.6 214 87.9
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 4.9e-102 375.2 228 83.3
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 1.1e-101 374.0 219 86.3
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 3.2e-101 372.5 294 70.4
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 9.2e-101 370.9 227 82.8
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 2.0e-100 369.8 227 83.7
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 4.6e-100 368.6 228 82.5
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 1.0e-99 367.5 225 83.1
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 1.0e-99 367.5 225 83.1
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 1.7e-99 366.7 225 82.2
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 1.7e-99 366.7 228 80.3
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 1.7e-99 366.7 225 84.0
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 2.3e-99 366.3 223 83.0
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 2.3e-99 366.3 223 83.0
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 3.0e-99 365.9 207 89.4
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 3.9e-99 365.5 228 80.3
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 5.0e-99 365.2 214 86.0
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 3.3e-98 362.5 225 82.7
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 3.3e-98 362.5 224 83.0
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 4.3e-98 362.1 225 81.3
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 9.5e-98 360.9 227 80.6
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 2.1e-97 359.8 220 82.7
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 2.1e-97 359.8 225 81.8
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 2.8e-97 359.4 233 80.3
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 3.6e-97 359.0 195 92.3
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 4.7e-97 358.6 269 69.9
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 6.2e-97 358.2 227 82.4
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 1.1e-96 357.5 224 82.6
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 3.1e-96 355.9 308 66.2
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 3.1e-96 355.9 308 64.9
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 4.0e-96 355.5 214 83.6
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 5.2e-96 355.1 309 66.3
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 5.2e-96 355.1 223 78.5
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 1.2e-95 354.0 308 63.6
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 1.5e-95 353.6 305 64.9
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 1.5e-95 353.6 214 82.7
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 2.0e-95 353.2 215 81.9
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 2.6e-95 352.8 195 91.3
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 5.8e-95 351.7 310 64.5
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 5.8e-95 351.7 310 64.5
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 7.5e-95 351.3 204 88.2
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 9.8e-95 350.9 203 87.2
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 9.8e-95 350.9 308 66.2
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 9.8e-95 350.9 308 66.2
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 9.8e-95 350.9 214 81.8
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 1.3e-94 350.5 306 65.0
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 1.7e-94 350.1 222 78.8
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 2.2e-94 349.7 307 65.5
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 6.4e-94 348.2 226 78.3
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 6.4e-94 348.2 305 64.3
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 8.3e-94 347.8 197 90.4
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 1.1e-93 347.4 307 66.8
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.1e-93 347.4 213 83.1
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 1.9e-93 346.7 228 77.2
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 1.9e-93 346.7 233 77.3
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 3.2e-93 345.9 311 66.2
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 3.2e-93 345.9 310 67.4
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 3.2e-93 345.9 243 76.1
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 3.2e-93 345.9 214 79.9
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 5.4e-93 345.1 229 78.2
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 7.1e-93 344.7 215 81.4
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 7.1e-93 344.7 309 66.0
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 9.2e-93 344.4 211 82.9
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 1.6e-92 343.6 310 61.6
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 4.6e-92 342.0 193 89.1
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 3.9e-91 339.0 239 74.5
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 8.6e-91 337.8 198 86.4
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 3.3e-90 335.9 292 63.7
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 1.5e-87 327.0 214 79.0
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 3.2e-85 319.3 187 85.0
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 4.1e-85 318.9 246 71.5
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 3.5e-84 315.8 344 53.2
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 1.0e-83 314.3 187 82.4
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 1.0e-83 314.3 210 79.0
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 3.9e-83 312.4 187 84.5
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 8.6e-83 311.2 187 82.9
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 6.2e-81 305.1 178 86.0
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 2.2e-78 296.6 227 71.8
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 4.2e-77 292.4 179 81.6
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 1.9e-74 283.5 157 91.1
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 3.4e-71 272.7 192 71.9
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 7.6e-71 271.6 178 77.0
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 6.4e-70 268.5 170 79.4
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 3.9e-67 259.2 156 83.3
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 1.6e-65 253.8 134 95.5
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 1.4e-64 250.8 160 76.2
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 7.6e-63 245.0 172 71.5
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 1.3e-62 244.2 207 64.7
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 1.3e-62 244.2 230 60.0
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 3.8e-62 242.7 191 72.8
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 3.5e-60 236.1 160 71.9
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 7.9e-60 235.0 135 88.9
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 1.3e-46 191.0 120 79.2
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 2.0e-39 167.2 187 55.1
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 5.9e-39 165.6 90 93.3
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 1.7e-38 164.1 89 92.1
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 4.2e-37 159.5 184 50.0
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 4.6e-36 156.0 110 70.0
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 9.7e-34 148.3 160 50.6
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 4.1e-24 116.3 78 73.1
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 2.6e-23 113.6 86 68.6
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 1.7e-22 110.9 78 69.2
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 3.7e-17 93.2 72 63.9
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 5.0e-14 82.8 73 53.4
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 1.5e-13 81.3 70 58.6


User provided reference genes

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