Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 2.4e-82 308.9 174 100.0
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 4.5e-76 288.1 143 100.0
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 9.3e-74 280.4 174 79.9
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 4.3e-71 271.6 174 77.6
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 7.4e-71 270.8 174 77.0
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 2.2e-70 269.2 174 76.4
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 2.8e-70 268.9 174 79.9
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 2.8e-70 268.9 174 77.0
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 2.8e-70 268.9 174 76.4
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 2.8e-70 268.9 174 76.4
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 3.7e-70 268.5 174 79.3
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 1.1e-69 266.9 174 75.9
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 1.8e-69 266.2 174 75.3
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 9.0e-69 263.8 174 74.1
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 1.2e-68 263.5 174 75.9
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 5.9e-68 261.2 174 73.0
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 1.0e-67 260.4 174 73.0
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 1.3e-67 260.0 174 73.6
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 2.9e-67 258.8 174 71.8
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 3.8e-67 258.5 174 73.0
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 5.0e-67 258.1 174 72.4
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 8.5e-67 257.3 174 72.4
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 8.5e-67 257.3 173 80.9
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 1.1e-66 256.9 174 75.9
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 1.9e-66 256.1 174 71.3
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.9e-66 256.1 174 71.3
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.9e-66 256.1 174 71.8
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 3.2e-66 255.4 174 71.3
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 4.2e-66 255.0 174 73.0
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 5.5e-66 254.6 174 77.6
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 5.5e-66 254.6 174 71.8
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 7.2e-66 254.2 174 70.7
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 1.2e-65 253.4 174 69.5
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 1.2e-65 253.4 174 73.6
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 1.2e-65 253.4 194 68.0
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 1.2e-65 253.4 171 76.6
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 1.6e-65 253.1 174 70.7
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 2.7e-65 252.3 174 78.2
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 3.6e-65 251.9 174 71.3
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 4.6e-65 251.5 174 71.3
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 6.1e-65 251.1 174 69.0
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 6.1e-65 251.1 174 72.4
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 1.3e-64 250.0 174 70.1
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 1.5e-63 246.5 174 67.8
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 1.5e-63 246.5 174 67.8
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 1.5e-63 246.5 174 67.8
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 1.5e-63 246.5 174 67.8
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 1.5e-63 246.5 174 68.4
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 1.9e-63 246.1 174 67.8
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 1.9e-63 246.1 174 67.8
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 1.9e-63 246.1 174 77.6
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 2.5e-63 245.7 175 70.3
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 3.3e-63 245.4 174 70.1
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 3.3e-63 245.4 174 69.5
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 3.3e-63 245.4 174 68.4
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 4.3e-63 245.0 174 67.2
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 5.7e-63 244.6 174 75.9
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 5.7e-63 244.6 174 68.4
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 7.4e-63 244.2 174 67.8
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 1.3e-62 243.4 174 69.5
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 2.2e-62 242.7 174 66.1
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 4.8e-62 241.5 174 67.8
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 4.8e-62 241.5 174 67.8
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 6.3e-62 241.1 174 66.7
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 8.2e-62 240.7 174 66.1
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 1.1e-61 240.4 174 67.2
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 1.4e-61 240.0 174 67.8
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 1.4e-61 240.0 174 74.1
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 1.4e-61 240.0 174 74.1
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 1.8e-61 239.6 171 74.3
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 2.4e-61 239.2 174 66.1
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 4.1e-61 238.4 174 66.7
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 6.9e-61 237.7 174 66.7
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 6.9e-61 237.7 175 66.3
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 9.1e-61 237.3 174 66.1
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 2.0e-60 236.1 174 64.4
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 2.6e-60 235.7 174 64.9
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 3.4e-60 235.3 174 73.6
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 3.4e-60 235.3 173 64.7
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 3.4e-60 235.3 156 74.4
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 5.9e-60 234.6 174 74.1
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 7.7e-60 234.2 174 66.7
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 7.7e-60 234.2 174 72.4
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 7.7e-60 234.2 174 72.4
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 1.0e-59 233.8 174 74.1
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 2.2e-59 232.6 198 61.1
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 2.2e-59 232.6 174 73.0
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 2.9e-59 232.3 171 67.8
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 5.0e-59 231.5 174 66.1
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 1.4e-58 229.9 174 71.3
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 2.5e-58 229.2 144 74.3
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 2.5e-58 229.2 174 65.5
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 7.2e-58 227.6 174 63.2
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 7.2e-58 227.6 174 68.4
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 1.2e-57 226.9 174 63.2
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 1.6e-57 226.5 174 72.4
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 2.1e-57 226.1 174 73.0
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 3.6e-57 225.3 174 64.4
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 3.6e-57 225.3 174 64.9
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 6.1e-57 224.6 174 63.8
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 1.4e-56 223.4 166 64.5
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 1.4e-56 223.4 166 64.5
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 1.5e-55 219.9 144 70.8
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 2.6e-55 219.2 174 62.1
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 9.7e-55 217.2 175 62.3
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 1.3e-54 216.9 122 82.8
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 2.8e-54 215.7 174 67.2
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 2.8e-54 215.7 174 65.5
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 4.8e-54 214.9 196 64.3
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 4.1e-53 211.8 171 67.3
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 5.3e-53 211.5 171 67.3
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 1.5e-52 209.9 146 69.9
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 8.5e-51 204.1 122 79.5
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 8.5e-51 204.1 147 70.7
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 2.5e-50 202.6 122 76.2
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 2.7e-49 199.1 239 52.7
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 2.6e-47 192.6 175 60.0
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 2.8e-46 189.1 182 60.4
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 3.8e-43 178.7 176 52.3
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 1.8e-40 169.9 94 85.1
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 6.7e-40 167.9 171 48.0
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 1.2e-39 167.2 94 80.9
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 2.8e-38 162.5 94 77.7
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 4.8e-38 161.8 173 49.7
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 4.1e-37 158.7 129 55.8
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 2.0e-36 156.4 93 78.5
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 2.2e-35 152.9 172 44.8
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 3.2e-34 149.1 173 48.6
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 7.7e-28 127.9 85 65.9
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 1.4e-24 117.1 96 52.1
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 3.0e-24 115.9 75 66.7
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 4.0e-24 115.5 66 77.3
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 4.5e-20 102.1 85 71.8
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 5.9e-20 101.7 129 41.1
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 2.3e-19 99.8 53 86.8
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 5.0e-19 98.6 74 62.2
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 1.1e-18 97.4 55 81.8
PRCOL_00004780 Prasinoderma coloniale HOM05D005031 ORTHO05D006098 1.9e-18 96.7 134 35.8
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 4.4e-15 85.5 48 83.3
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 3.5e-12 75.9 38 86.8
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 1.3e-11 73.9 131 32.8
Rhsim03G0261000 Rhododendron simsii HOM05D005031 ORTHO05D006098 2.5e-10 69.7 76 47.4
CARHR184590 Cardamine hirsuta HOM05D005031 ORTHO05D006098 7.5e-07 58.2 48 58.3
MELO3C033061.2 Cucumis melo HOM05D005031 ORTHO05D006098 6.4e-06 55.1 31 80.6


User provided reference genes

Program Settings