Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 2.2e-111 405.6 197 100.0
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 1.2e-104 383.3 190 98.4
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 1.2e-74 283.5 140 95.7
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 8.1e-74 280.8 190 69.5
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 2.0e-72 276.2 194 66.0
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 4.4e-72 275.0 194 66.5
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 1.3e-71 273.5 190 68.4
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 1.7e-71 273.1 189 68.8
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 1.7e-71 273.1 190 65.8
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 3.8e-71 271.9 189 63.0
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 6.4e-71 271.2 187 68.4
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 2.4e-70 269.2 189 63.5
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 4.2e-70 268.5 190 65.8
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 4.2e-70 268.5 189 65.1
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 5.4e-70 268.1 189 66.1
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 9.3e-70 267.3 189 64.0
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 1.2e-69 266.9 190 66.3
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.6e-69 266.5 189 66.1
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 2.7e-69 265.8 190 67.9
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 4.6e-69 265.0 190 67.9
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 4.6e-69 265.0 188 64.9
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 7.8e-69 264.2 190 67.4
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 1.0e-68 263.8 188 63.3
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 2.3e-68 262.7 189 63.0
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 1.9e-67 259.6 189 63.5
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 1.9e-67 259.6 189 64.0
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 4.3e-67 258.5 189 61.9
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 1.3e-66 256.9 189 64.0
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 6.2e-66 254.6 196 61.7
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 1.4e-65 253.4 189 61.9
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 1.8e-65 253.1 189 65.6
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 2.4e-65 252.7 189 59.8
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 3.1e-65 252.3 190 64.7
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 5.3e-65 251.5 189 63.5
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 1.2e-64 250.4 189 61.4
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 5.8e-64 248.1 189 60.8
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 1.7e-63 246.5 189 60.3
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 1.1e-62 243.8 190 59.5
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 1.9e-62 243.0 190 60.5
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 2.4e-62 242.7 189 61.9
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 1.2e-61 240.4 189 58.7
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 1.2e-61 240.4 189 60.3
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 1.6e-61 240.0 190 58.4
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 1.7e-60 236.5 190 56.8
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 3.9e-60 235.3 189 59.3
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 2.5e-59 232.6 190 55.8
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 3.3e-59 232.3 190 55.3
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 4.3e-59 231.9 189 58.2
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 5.6e-59 231.5 190 54.7
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 1.6e-58 229.9 191 58.1
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 2.1e-58 229.6 190 53.7
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 2.1e-58 229.6 190 55.8
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 2.1e-58 229.6 190 59.5
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 2.1e-58 229.6 190 56.8
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 6.2e-58 228.0 193 54.4
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.8e-57 226.5 189 58.2
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 2.4e-57 226.1 191 53.9
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 2.4e-57 226.1 191 53.9
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 2.4e-57 226.1 190 54.7
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 2.4e-57 226.1 190 56.3
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 3.1e-57 225.7 190 58.4
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 9.0e-57 224.2 194 56.7
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 2.0e-56 223.0 191 53.9
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 2.6e-56 222.6 190 57.4
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 2.6e-56 222.6 188 56.4
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 3.4e-56 222.2 196 55.6
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 4.5e-56 221.9 190 58.9
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 6.4e-55 218.0 190 57.4
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 1.1e-54 217.2 190 55.8
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 1.4e-54 216.9 191 55.0
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 2.4e-54 216.1 190 57.9
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 5.4e-54 214.9 189 56.1
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 5.4e-54 214.9 147 66.0
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 9.3e-54 214.2 190 55.3
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 1.2e-53 213.8 191 56.0
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 1.2e-53 213.8 191 53.9
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 2.1e-53 213.0 196 54.6
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 2.7e-53 212.6 161 61.5
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 6.0e-53 211.5 189 55.6
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 7.9e-53 211.1 189 53.4
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 7.9e-53 211.1 189 55.6
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 1.0e-52 210.7 189 52.4
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 3.9e-52 208.8 191 53.9
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 5.1e-52 208.4 191 53.9
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 1.9e-51 206.5 191 53.4
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 4.8e-50 201.8 190 52.6
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 1.8e-49 199.9 189 51.9
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 5.3e-49 198.4 193 50.8
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 9.0e-49 197.6 190 53.7
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 4.5e-48 195.3 193 49.7
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 3.8e-47 192.2 191 49.2
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 4.2e-46 188.7 192 51.0
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 7.1e-46 188.0 197 45.2
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 1.3e-44 183.7 197 44.2
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 1.1e-43 180.6 180 48.3
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 8.2e-42 174.5 195 44.1
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 9.0e-41 171.0 194 46.4
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 5.8e-40 168.3 190 47.9
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 2.2e-39 166.4 146 56.2
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 4.1e-33 145.6 131 51.9
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 7.2e-30 134.8 206 39.3
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 9.7e-27 124.4 142 44.4
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 1.7e-23 113.6 197 34.5
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.6e-21 107.1 170 33.5
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 4.7e-21 105.5 183 33.9
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 6.1e-21 105.1 180 37.8
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 8.8e-20 101.3 196 31.1
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 7.4e-19 98.2 180 31.7
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.4e-17 94.0 200 31.0
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 4.1e-17 92.4 184 32.6
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 9.1e-17 91.3 88 46.6
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 3.8e-15 85.9 44 97.7
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 6.1e-13 78.6 95 44.2
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.9e-12 75.9 95 42.1
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 5.2e-12 75.5 192 30.2
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.9e-06 57.0 43 65.1
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 2.5e-06 56.6 36 66.7


User provided reference genes

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