Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 4.2e-101 371.3 180 100.0
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 9.0e-96 353.6 176 97.7
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 4.5e-87 324.7 176 90.9
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 6.3e-73 277.7 176 73.9
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 1.5e-71 273.1 178 71.9
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 3.8e-70 268.5 178 73.0
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 5.0e-70 268.1 176 72.7
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 5.5e-69 264.6 176 71.0
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 5.5e-69 264.6 176 71.6
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 7.2e-69 264.2 176 69.9
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 2.1e-68 262.7 176 69.3
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 2.7e-68 262.3 179 71.5
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 4.6e-68 261.5 176 71.0
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 4.6e-68 261.5 176 69.3
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 4.6e-68 261.5 176 69.3
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 7.9e-68 260.8 179 70.4
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 2.5e-66 255.8 176 71.0
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 2.5e-66 255.8 176 69.9
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 5.7e-66 254.6 176 69.9
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 5.7e-66 254.6 176 71.0
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 7.4e-66 254.2 176 70.5
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.6e-65 253.1 176 67.6
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 8.2e-65 250.8 176 67.0
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 3.4e-63 245.4 176 67.0
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 3.4e-63 245.4 176 67.0
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 4.5e-63 245.0 176 64.8
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 4.5e-63 245.0 176 67.0
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 1.0e-62 243.8 176 64.8
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 1.7e-62 243.0 176 68.2
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 5.0e-62 241.5 176 68.8
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 5.0e-62 241.5 177 68.4
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 6.5e-62 241.1 176 68.2
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 4.2e-61 238.4 176 64.2
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 5.5e-61 238.0 176 64.8
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 5.5e-61 238.0 176 65.9
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 2.7e-60 235.7 176 66.5
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 6.1e-60 234.6 176 65.3
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 6.1e-60 234.6 176 65.9
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 1.0e-59 233.8 176 65.9
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 1.8e-59 233.0 177 65.0
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 2.3e-59 232.6 176 64.2
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 3.9e-59 231.9 176 64.2
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 6.7e-59 231.1 176 64.8
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 1.1e-58 230.3 177 66.1
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 1.1e-58 230.3 177 63.8
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 2.0e-58 229.6 176 64.2
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 2.0e-58 229.6 178 62.4
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 2.6e-58 229.2 179 64.8
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 7.4e-58 227.6 178 65.7
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 7.4e-58 227.6 176 64.8
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 9.7e-58 227.3 176 63.6
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 9.7e-58 227.3 180 64.4
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 1.3e-57 226.9 179 63.7
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 2.2e-57 226.1 176 63.6
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 3.7e-57 225.3 178 64.0
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 4.8e-57 224.9 177 62.1
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 6.3e-57 224.6 178 65.2
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 3.1e-56 222.2 178 65.2
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 2.0e-55 219.5 176 62.5
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 3.4e-55 218.8 179 60.9
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 1.7e-54 216.5 177 60.5
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 2.2e-54 216.1 173 64.2
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 2.7e-52 209.1 178 61.8
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 1.4e-51 206.8 178 61.2
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 3.0e-51 205.7 178 60.7
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 3.0e-51 205.7 178 60.7
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 8.8e-51 204.1 178 59.0
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 1.1e-50 203.8 180 58.9
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 2.0e-50 203.0 165 61.2
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 3.3e-50 202.2 180 58.9
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 2.8e-49 199.1 173 59.0
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 8.2e-49 197.6 165 59.4
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 2.4e-48 196.1 179 58.1
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 2.4e-48 196.1 172 57.0
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 4.1e-48 195.3 177 56.5
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 7.0e-48 194.5 176 56.8
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 2.0e-47 193.0 176 56.2
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 1.7e-46 189.9 176 56.2
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 1.7e-46 189.9 177 56.5
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 2.2e-46 189.5 177 55.4
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 3.8e-46 188.7 177 55.9
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 5.0e-46 188.3 176 55.7
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 6.5e-46 188.0 176 57.4
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 1.9e-45 186.4 179 54.2
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 2.5e-45 186.0 159 57.2
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 7.2e-45 184.5 176 54.5
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 6.1e-44 181.4 177 51.4
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 8.0e-44 181.0 148 60.8
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.4e-43 180.3 175 50.3
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 2.3e-43 179.5 177 54.8
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 3.0e-43 179.1 179 50.3
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.5e-42 176.8 168 51.2
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 8.2e-41 171.0 176 49.4
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 1.0e-38 164.1 123 66.7
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 1.0e-38 164.1 170 54.1
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 1.3e-38 163.7 170 51.8
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 6.5e-38 161.4 170 47.1
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 5.5e-37 158.3 175 51.4
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.7e-36 156.0 178 43.8
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 3.0e-35 152.5 119 60.5
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 4.8e-33 145.2 147 53.7
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 2.5e-29 132.9 170 46.5
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 2.5e-29 132.9 115 58.3
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 6.8e-27 124.8 176 39.2
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 2.8e-25 119.4 98 61.2
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 1.7e-22 110.2 147 42.9
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 1.1e-21 107.5 135 40.7
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 6.1e-20 101.7 175 34.9
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.0e-19 100.9 139 42.4
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 4.0e-19 99.0 157 42.7
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.4e-16 90.5 129 41.9
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.8e-16 90.1 141 39.0
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.0e-14 84.3 99 46.5
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.3e-14 84.0 170 32.4
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 5.0e-14 82.0 136 38.2
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 3.6e-12 75.9 60 56.7
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 2.3e-11 73.2 126 38.9


User provided reference genes

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