Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1543 Acer truncatum HOM05D006309 ORTHO05D007937 6.4e-51 203.8 100 100.0
Ciclev10013195m.g Citrus clementina HOM05D006309 ORTHO05D007937 2.3e-45 185.3 96 90.6
Duzib205G1677 Durio zibethinus HOM05D006309 ORTHO05D007937 4.0e-45 184.5 96 90.6
Cpa.g.sc48.50 Carica papaya HOM05D006309 ORTHO05D007937 6.8e-45 183.7 96 89.6
QL03p010963 Quercus lobata HOM05D006309 ORTHO05D007937 1.2e-44 183.0 95 90.5
Manes.09G181100 Manihot esculenta HOM05D006309 ORTHO05D007937 2.6e-44 181.8 94 91.5
Solyc03g098120.3 Solanum lycopersicum HOM05D006309 ORTHO05D007937 3.4e-44 181.4 94 90.4
Sopen03g028820 Solanum pennellii HOM05D006309 ORTHO05D007937 3.4e-44 181.4 94 90.4
Dinv24513 Davidia involucrata HOM05D006309 ORTHO05D007937 5.8e-44 180.6 94 90.4
PGR083G2709 Punica granatum HOM05D006309 ORTHO05D007937 7.5e-44 180.3 96 88.5
CSS0019637 Camellia sinensis var. sinensis HOM05D006309 ORTHO05D007937 9.9e-44 179.9 93 92.5
CSS0033999 Camellia sinensis var. sinensis HOM05D006309 ORTHO05D007937 9.9e-44 179.9 93 92.5
MD12G1199900 Malus domestica HOM05D006309 ORTHO05D007937 9.9e-44 179.9 96 86.5
PGSC0003DMG400031051 Solanum tuberosum HOM05D006309 ORTHO05D007937 9.9e-44 179.9 94 89.4
Prupe.6G304700 Prunus persica HOM05D006309 ORTHO05D007937 1.3e-43 179.5 95 88.4
CAN.G637.25 Capsicum annuum HOM05D006309 ORTHO05D007937 1.7e-43 179.1 94 88.3
Haze_03988 Corylus avellana HOM05D006309 ORTHO05D007937 2.2e-43 178.7 96 86.5
Ah.06g190700 Amaranthus hybridus HOM05D006309 ORTHO05D007937 2.9e-43 178.3 93 89.2
Cc02_g35850 Coffea canephora HOM05D006309 ORTHO05D007937 2.9e-43 178.3 94 88.3
Nn7g36656 Nelumbo nucifera HOM05D006309 ORTHO05D007937 2.9e-43 178.3 96 86.5
Nitab4.5_0000936g0050 Nicotiana tabacum HOM05D006309 ORTHO05D007937 2.9e-43 178.3 94 88.3
Oeu061901.1 Olea europaea HOM05D006309 ORTHO05D007937 3.7e-43 177.9 94 88.3
Thecc.03G310900 Theobroma cacao HOM05D006309 ORTHO05D007937 3.7e-43 177.9 96 87.5
Rhsim11G0105200 Rhododendron simsii HOM05D006309 ORTHO05D007937 4.9e-43 177.6 93 90.3
Peaxi162Scf00171g00731 Petunia axillaris HOM05D006309 ORTHO05D007937 6.4e-43 177.2 94 87.2
vmacro16416 Vaccinium macrocarpon HOM05D006309 ORTHO05D007937 6.4e-43 177.2 93 89.2
Nitab4.5_0004454g0020 Nicotiana tabacum HOM05D006309 ORTHO05D007937 8.3e-43 176.8 94 87.2
Hund05518 Selenicereus undatus HOM05D006309 ORTHO05D007937 8.3e-43 176.8 93 89.2
FvH4_6g08490 Fragaria vesca HOM05D006309 ORTHO05D007937 1.4e-42 176.0 96 84.4
FAN02G0285 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.4e-42 176.0 96 84.4
FAN05G1622 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.4e-42 176.0 96 84.4
FAN09G1610 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.4e-42 176.0 96 84.4
FAN14G3239 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.4e-42 176.0 96 84.4
AUR62017099 Chenopodium quinoa HOM05D006309 ORTHO05D007937 1.9e-42 175.6 93 89.2
Rhsim11G0104500 Rhododendron simsii HOM05D006309 ORTHO05D007937 2.4e-42 175.3 93 87.1
arahy.Tifrunner.gnm1.ann1.RC3JIS Arachis hypogaea HOM05D006309 ORTHO05D007937 3.2e-42 174.9 93 88.2
Gohir.D08G174300 Gossypium hirsutum HOM05D006309 ORTHO05D007937 3.2e-42 174.9 94 89.4
Gorai.004G182000 Gossypium raimondii HOM05D006309 ORTHO05D007937 3.2e-42 174.9 94 89.4
Psat6g155680 Pisum sativum HOM05D006309 ORTHO05D007937 3.2e-42 174.9 93 88.2
AUR62000475 Chenopodium quinoa HOM05D006309 ORTHO05D007937 4.1e-42 174.5 93 87.1
Ca_10200_v3 Cicer arietinum L. HOM05D006309 ORTHO05D007937 4.1e-42 174.5 93 87.1
SalBow5G3054 Salvia bowleyana HOM05D006309 ORTHO05D007937 4.1e-42 174.5 96 86.5
CiPaw.07G036200 Carya illinoinensis HOM05D006309 ORTHO05D007937 5.4e-42 174.1 96 84.4
Hma1.2p1_0759F.1_g213920 Hydrangea macrophylla HOM05D006309 ORTHO05D007937 5.4e-42 174.1 93 89.2
arahy.Tifrunner.gnm1.ann1.P9U7KY Arachis hypogaea HOM05D006309 ORTHO05D007937 7.1e-42 173.7 93 87.1
arahy.Tifrunner.gnm1.ann1.VGN228 Arachis hypogaea HOM05D006309 ORTHO05D007937 7.1e-42 173.7 93 87.1
Gohir.A08G153400 Gossypium hirsutum HOM05D006309 ORTHO05D007937 7.1e-42 173.7 94 89.4
RcHm_v2.0_Chr3g0458531 Rosa chinensis HOM05D006309 ORTHO05D007937 7.1e-42 173.7 96 83.3
Sc09g0002420 Simmondsia chinensis HOM05D006309 ORTHO05D007937 9.2e-42 173.3 94 84.0
Lalb_Chr02g0147551 Lupinus albus HOM05D006309 ORTHO05D007937 1.2e-41 172.9 96 82.3
Sc16g0009400 Simmondsia chinensis HOM05D006309 ORTHO05D007937 1.6e-41 172.6 94 85.1
TWI36G0052 Tripterygium wilfordii HOM05D006309 ORTHO05D007937 1.6e-41 172.6 94 87.2
VMungo0720G0633 Vigna mungo HOM05D006309 ORTHO05D007937 1.6e-41 172.6 93 87.1
MELO3C004152.2 Cucumis melo HOM05D006309 ORTHO05D007937 2.7e-41 171.8 96 82.3
Migut.H01672 Erythranthe guttata HOM05D006309 ORTHO05D007937 2.7e-41 171.8 93 87.1
Actinidia22855 Actinidia chinensis HOM05D006309 ORTHO05D007937 3.5e-41 171.4 93 88.2
BcaB07g31141 Brassica carinata HOM05D006309 ORTHO05D007937 3.5e-41 171.4 97 81.4
BcaC04g22081 Brassica carinata HOM05D006309 ORTHO05D007937 3.5e-41 171.4 97 81.4
C09p23680 Brassica napus HOM05D006309 ORTHO05D007937 3.5e-41 171.4 97 81.4
CiPaw.04G111200 Carya illinoinensis HOM05D006309 ORTHO05D007937 3.5e-41 171.4 93 87.1
Sp1g28800 Schrenkiella parvula HOM05D006309 ORTHO05D007937 3.5e-41 171.4 97 81.4
Phvul.007G205000 Phaseolus vulgaris HOM05D006309 ORTHO05D007937 4.6e-41 171.0 93 86.0
vmacro01669 Vaccinium macrocarpon HOM05D006309 ORTHO05D007937 4.6e-41 171.0 95 86.3
EL10Ac4g09558 Beta vulgaris HOM05D006309 ORTHO05D007937 6.0e-41 170.6 95 86.3
BraA09t37510Z Brassica rapa HOM05D006309 ORTHO05D007937 6.0e-41 170.6 94 84.0
FvH4_2g19190 Fragaria vesca HOM05D006309 ORTHO05D007937 6.0e-41 170.6 96 82.3
FAN24G3038 Fragaria x ananassa HOM05D006309 ORTHO05D007937 6.0e-41 170.6 96 82.3
Sp2g05970 Schrenkiella parvula HOM05D006309 ORTHO05D007937 6.0e-41 170.6 97 80.4
BolC9t55290H Brassica oleracea HOM05D006309 ORTHO05D007937 7.8e-41 170.2 97 80.4
CARHR288700 Cardamine hirsuta HOM05D006309 ORTHO05D007937 7.8e-41 170.2 98 80.6
FAN15G2822 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.0e-40 169.9 96 81.2
Lalb_Chr21g0310061 Lupinus albus HOM05D006309 ORTHO05D007937 1.0e-40 169.9 94 81.9
Potri.005G002900 Populus trichocarpa HOM05D006309 ORTHO05D007937 1.0e-40 169.9 94 84.0
Aa31LG2G11310 Aethionema arabicum HOM05D006309 ORTHO05D007937 1.3e-40 169.5 97 81.4
TAR636G2194 Trochodendron aralioides HOM05D006309 ORTHO05D007937 1.3e-40 169.5 95 82.1
ClCG02G014650 Citrullus lanatus HOM05D006309 ORTHO05D007937 1.7e-40 169.1 94 83.0
Medtr1g484930 Medicago truncatula HOM05D006309 ORTHO05D007937 1.7e-40 169.1 93 83.9
Sed0021183 Sechium edule HOM05D006309 ORTHO05D007937 1.7e-40 169.1 94 83.0
AL1G67090 Arabidopsis lyrata HOM05D006309 ORTHO05D007937 2.3e-40 168.7 93 84.9
Carub.0002s0712 Capsella rubella HOM05D006309 ORTHO05D007937 2.3e-40 168.7 93 84.9
CDE09G0003 Ceratophyllum demersum HOM05D006309 ORTHO05D007937 2.3e-40 168.7 96 81.2
GSVIVG01031328001 Vitis vinifera HOM05D006309 ORTHO05D007937 2.3e-40 168.7 93 83.9
A09p18900 Brassica napus HOM05D006309 ORTHO05D007937 3.0e-40 168.3 94 83.0
THA.LOC104820476 Tarenaya hassleriana HOM05D006309 ORTHO05D007937 3.9e-40 167.9 93 82.8
CANSAT54G2801 Cannabis sativa HOM05D006309 ORTHO05D007937 5.1e-40 167.5 96 81.2
Thhalv10010969m.g Eutrema salsugineum HOM05D006309 ORTHO05D007937 5.1e-40 167.5 97 80.4
Glyma.20G090800 Glycine max HOM05D006309 ORTHO05D007937 6.6e-40 167.2 93 84.9
Glyma.20G092200 Glycine max HOM05D006309 ORTHO05D007937 6.6e-40 167.2 93 84.9
AT1G57540 Arabidopsis thaliana HOM05D006309 ORTHO05D007937 1.1e-39 166.4 93 82.8
ECA233G1704 Erigeron canadensis HOM05D006309 ORTHO05D007937 1.5e-39 166.0 94 80.9
Lj5g0003279 Lotus japonicus HOM05D006309 ORTHO05D007937 1.9e-39 165.6 93 83.9
Lsat_1_v5_gn_1_112940 Lactuca sativa HOM05D006309 ORTHO05D007937 2.5e-39 165.2 94 80.9
ATR0796G010 Amborella trichopoda HOM05D006309 ORTHO05D007937 3.3e-39 164.9 94 83.0
Os01g0250600 Oryza sativa ssp. japonica HOM05D006309 ORTHO05D007937 3.3e-39 164.9 94 79.8
TPR.G2591 Trifolium pratense HOM05D006309 ORTHO05D007937 3.3e-39 164.9 93 80.6
Aqoxy2G02488 Aquilegia oxysepala HOM05D006309 ORTHO05D007937 1.2e-38 162.9 96 75.0
CsaV3_2G007320 Cucumis sativus L. HOM05D006309 ORTHO05D007937 2.1e-38 162.2 93 80.6
unitig_62.g23615 Utricularia gibba HOM05D006309 ORTHO05D007937 2.8e-38 161.8 93 82.8
HanXRQChr08g0212181 Helianthus annuus HOM05D006309 ORTHO05D007937 6.2e-38 160.6 89 82.0
DCAR_007528 Daucus carota HOM05D006309 ORTHO05D007937 1.8e-37 159.1 108 74.1
PSO210G0390 Papaver somniferum HOM05D006309 ORTHO05D007937 1.8e-37 159.1 95 78.9
PSO761G0726 Papaver somniferum HOM05D006309 ORTHO05D007937 1.8e-37 159.1 95 78.9
arahy.Tifrunner.gnm1.ann1.01IKZ7 Arachis hypogaea HOM05D006309 ORTHO05D007937 4.0e-37 157.9 126 65.1
Prupe.8G045300 Prunus persica HOM05D006309 ORTHO05D007937 4.0e-37 157.9 95 78.9
SalBow4G0401 Salvia bowleyana HOM05D006309 ORTHO05D007937 4.0e-37 157.9 119 68.9
SalBow4G1963 Salvia bowleyana HOM05D006309 ORTHO05D007937 4.0e-37 157.9 119 68.9
SalBow4G2407 Salvia bowleyana HOM05D006309 ORTHO05D007937 4.0e-37 157.9 119 68.9
Sabra13G0001700 Salix brachista HOM05D006309 ORTHO05D007937 8.9e-37 156.8 112 69.6
Cfa012394 Carpinus fangiana HOM05D006309 ORTHO05D007937 2.2e-35 152.1 84 84.5
Lj4g0016187 Lotus japonicus HOM05D006309 ORTHO05D007937 2.9e-35 151.8 93 77.4
Sabra05G0000300 Salix brachista HOM05D006309 ORTHO05D007937 5.4e-34 147.5 137 56.9
Sabra05G0014400 Salix brachista HOM05D006309 ORTHO05D007937 5.4e-34 147.5 137 56.9
EL10Ac4g07573 Beta vulgaris HOM05D006309 ORTHO05D007937 1.2e-33 146.4 96 77.1
Dinv30948 Davidia involucrata HOM05D006309 ORTHO05D007937 1.8e-29 132.5 70 87.1
MBI18_g10373_MAGBIO Magnolia biondii HOM05D006309 ORTHO05D007937 3.1e-29 131.7 96 69.8
Mapoly0075s0044 Marchantia polymorpha HOM05D006309 ORTHO05D007937 1.1e-21 106.7 97 50.5
Pp3c8_1240 Physcomitrium patens HOM05D006309 ORTHO05D007937 1.2e-20 103.2 93 52.7
HanXRQChr06g0180851 Helianthus annuus HOM05D006309 ORTHO05D007937 5.8e-20 100.9 50 90.0
HanXRQChr16g0506271 Helianthus annuus HOM05D006309 ORTHO05D007937 5.8e-20 100.9 50 90.0
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 1.3e-16 89.7 49 83.7
Zm00001eb239560 Zea mays HOM05D006309 ORTHO05D007937 3.9e-16 88.2 50 78.0
COL.COLO4_16932 Corchorus olitorius HOM05D006309 ORTHO05D007937 6.7e-16 87.4 47 85.1
Glyma.09G093300 Glycine max HOM05D006309 ORTHO05D000504 3.3e-15 85.1 59 66.1
MBI06_g06498_MAGBIO Magnolia biondii HOM05D006309 ORTHO05D007937 7.4e-15 84.0 53 71.7
BNapus_Darmor_BZH_scaffold_223p00020 Brassica napus HOM05D006309 ORTHO05D007937 1.1e-10 70.1 39 84.6
Potri.013G002301 Populus trichocarpa HOM05D006309 ORTHO05D007937 7.1e-10 67.4 41 78.0


User provided reference genes

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