Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 1.0e-136 490.3 297 100.0
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 6.6e-112 407.9 309 81.9
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 7.3e-111 404.4 300 83.3
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 2.2e-107 392.9 315 76.2
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 7.1e-106 387.9 300 78.3
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 1.2e-105 387.1 297 81.5
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 1.7e-104 383.3 305 70.5
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 1.5e-103 380.2 303 81.5
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 5.6e-103 378.3 305 77.4
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 1.2e-102 377.1 305 76.4
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 3.6e-102 375.6 309 69.9
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 1.8e-101 373.2 304 74.3
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 4.0e-101 372.1 299 73.6
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 6.9e-101 371.3 307 71.3
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 2.0e-100 369.8 307 79.8
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 2.0e-100 369.8 305 76.7
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 5.8e-100 368.2 305 72.8
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 9.9e-100 367.5 300 78.7
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 9.9e-100 367.5 301 72.1
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 1.7e-99 366.7 273 81.3
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 2.9e-99 365.9 305 70.2
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 4.9e-99 365.2 296 68.2
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 6.4e-99 364.8 296 78.0
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 1.1e-98 364.0 304 66.4
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 1.4e-98 363.6 303 73.9
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 2.4e-98 362.8 310 71.3
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 2.4e-98 362.8 305 72.1
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 2.4e-98 362.8 299 73.2
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 3.2e-98 362.5 303 73.9
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 2.1e-97 359.8 306 69.9
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 4.6e-97 358.6 303 75.9
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 3.0e-96 355.9 306 71.2
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 3.0e-96 355.9 301 66.1
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 3.0e-96 355.9 303 66.0
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 4.3e-95 352.1 297 65.3
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 7.3e-95 351.3 306 70.3
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 9.6e-95 350.9 300 69.3
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 9.6e-95 350.9 302 76.5
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 1.6e-94 350.1 315 65.1
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 2.8e-94 349.4 317 71.9
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 3.6e-94 349.0 304 75.7
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 1.1e-93 347.4 301 74.8
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 1.8e-93 346.7 304 71.7
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 1.8e-93 346.7 300 70.7
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 1.8e-93 346.7 301 63.1
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 4.0e-93 345.5 341 70.1
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 5.3e-93 345.1 300 70.0
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 5.3e-93 345.1 276 81.2
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 6.9e-93 344.7 265 69.8
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 9.0e-93 344.4 301 69.8
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 9.0e-93 344.4 306 70.6
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.0e-92 343.2 306 70.3
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 3.4e-92 342.4 317 71.9
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 1.8e-88 330.1 301 73.8
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 8.7e-88 327.8 250 81.2
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 2.5e-87 326.2 303 59.4
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 7.4e-87 324.7 303 59.1
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 8.1e-86 321.2 303 71.3
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 1.1e-85 320.9 307 67.4
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 4.0e-85 318.9 303 69.6
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 6.9e-85 318.2 175 89.7
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 2.2e-83 313.2 303 69.3
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 3.8e-83 312.4 302 57.3
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 8.4e-83 311.2 296 62.8
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 4.2e-82 308.9 331 66.2
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 5.5e-82 308.5 295 65.8
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 7.1e-82 308.1 195 82.6
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 6.0e-81 305.1 341 64.8
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 6.0e-81 305.1 280 63.9
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.3e-80 303.9 302 67.2
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 5.6e-79 298.5 306 68.3
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 1.2e-76 290.8 301 69.4
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 1.2e-76 290.8 301 66.4
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 4.5e-76 288.9 301 69.1
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 1.7e-75 287.0 308 61.7
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 3.8e-75 285.8 298 67.1
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 1.4e-74 283.9 295 60.3
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 6.0e-73 278.5 342 58.8
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 1.0e-72 277.7 312 66.0
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 1.8e-72 276.9 275 68.7
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 2.3e-72 276.6 300 55.0
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 3.0e-72 276.2 300 59.0
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 6.7e-72 275.0 310 60.6
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.1e-71 274.2 312 60.3
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 5.7e-71 271.9 303 65.3
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 5.7e-71 271.9 303 65.3
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 7.4e-71 271.6 272 70.6
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 9.7e-71 271.2 305 61.6
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.2e-70 270.0 306 59.8
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 2.4e-69 266.5 295 63.7
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 4.1e-69 265.8 305 63.9
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 7.7e-68 261.5 302 52.3
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 7.7e-68 261.5 302 52.3
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 1.7e-67 260.4 303 59.1
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 1.7e-67 260.4 303 65.3
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 8.5e-67 258.1 189 67.2
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 1.2e-65 254.2 302 54.6
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 1.2e-65 254.2 302 54.6
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 1.2e-65 254.2 302 54.6
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 4.6e-65 252.3 332 53.6
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 2.0e-63 246.9 362 55.2
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 5.7e-63 245.4 304 58.2
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 2.0e-60 236.9 302 54.3
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 2.6e-60 236.5 308 57.5
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 1.7e-59 233.8 307 53.1
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 1.4e-58 230.7 308 59.7
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 1.6e-57 227.3 183 64.5
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 5.1e-56 222.2 274 62.8
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 3.3e-55 219.5 189 62.4
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 4.4e-55 219.2 295 59.3
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 1.3e-46 191.0 122 73.8
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 3.5e-44 183.0 137 67.2
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.2e-41 174.5 158 58.9
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 3.0e-40 169.9 116 69.8
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 1.1e-37 161.4 159 81.1
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 9.1e-37 158.3 186 50.0
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 4.5e-36 156.0 226 46.0
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 2.2e-30 137.1 105 64.8
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 1.5e-26 124.4 66 92.4
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 4.2e-26 122.9 136 51.5
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 3.7e-22 109.8 97 61.9
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 3.7e-22 109.8 97 61.9
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 8.3e-22 108.6 95 62.1
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 2.3e-19 100.5 127 53.5
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 6.6e-19 99.0 130 60.0
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 9.8e-15 85.1 57 70.2
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 1.3e-14 84.7 57 70.2
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.9e-13 80.9 48 75.0
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 3.9e-11 73.2 57 71.9
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 9.5e-10 68.6 66 59.1
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 1.4e-08 64.7 101 41.6
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.5e-07 61.2 105 39.0
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 3.4e-07 60.1 29 89.7
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 7.5e-07 58.9 105 38.1
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.7e-06 57.8 124 33.9
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 1.7e-06 57.8 114 36.0
MBI18_g10370_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 1.7e-06 57.8 62 56.5
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 1.7e-06 57.8 59 50.8
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 2.9e-06 57.0 60 46.7
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 2.9e-06 57.0 76 44.7
CDE12G0199 Ceratophyllum demersum HOM05D005384 ORTHO05D006477 3.7e-06 56.6 66 37.9
Lj4g0003244 Lotus japonicus HOM05D005384 ORTHO05D006477 3.7e-06 56.6 64 39.1
Lalb_Chr05g0228951 Lupinus albus HOM05D005384 ORTHO05D006477 3.7e-06 56.6 64 39.1
AagrBONN_evm.TU.Sc2ySwM_228.1188 Anthoceros agrestis HOM05D006753 ORTHO05D008521 4.9e-06 56.2 50 54.0
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 4.9e-06 56.2 101 31.7
Lalb_Chr16g0391981 Lupinus albus HOM05D005384 ORTHO05D006477 4.9e-06 56.2 64 37.5
Manes.02G081900 Manihot esculenta HOM05D005384 ORTHO05D006477 4.9e-06 56.2 64 40.6
Medtr8g070990 Medicago truncatula HOM05D005384 ORTHO05D006477 4.9e-06 56.2 64 39.1
Potri.004G081800 Populus trichocarpa HOM05D005384 ORTHO05D006477 4.9e-06 56.2 62 43.5
TPR.G28963 Trifolium pratense HOM05D005384 ORTHO05D006477 4.9e-06 56.2 64 39.1
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 6.4e-06 55.8 56 46.4
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 6.4e-06 55.8 53 47.2
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 6.4e-06 55.8 107 35.5
SEGI_21581 Sequoiadendron giganteum HOM05D005384 ORTHO05D006477 6.4e-06 55.8 66 39.4
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 6.4e-06 55.8 95 35.8
arahy.Tifrunner.gnm1.ann1.EB4ABC Arachis hypogaea HOM05D005384 ORTHO05D006477 8.3e-06 55.5 63 38.1
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 8.3e-06 55.5 56 46.4
arahy.Tifrunner.gnm1.ann1.R6E3N5 Arachis hypogaea HOM05D005384 ORTHO05D006477 8.3e-06 55.5 63 38.1
Oeu054547.2 Olea europaea HOM05D005384 ORTHO05D006477 8.3e-06 55.5 57 42.1
PGR042G2720 Punica granatum HOM05D005384 ORTHO05D006477 8.3e-06 55.5 64 39.1


User provided reference genes

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