Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1642.9 870 100.0
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1325.5 834 83.5
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1308.5 825 83.5
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1298.1 824 82.8
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1293.5 829 82.0
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1292.7 830 82.0
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1291.2 831 82.1
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1286.6 822 81.3
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1280.8 830 80.8
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1277.7 822 82.4
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1275.4 823 80.4
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1269.2 821 81.2
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1268.8 822 80.9
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1268.8 821 81.0
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1266.5 823 80.3
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1256.1 824 79.5
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1255.7 822 79.9
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1255.0 825 78.8
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1251.9 826 80.0
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1248.8 824 79.2
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1246.5 823 79.0
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1244.2 823 79.0
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1244.2 824 79.5
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1242.6 832 78.4
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1241.5 821 78.3
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1241.1 822 78.1
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1239.9 824 78.8
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1239.6 821 78.2
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1239.2 874 74.7
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1238.4 823 79.5
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1234.6 822 79.0
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1234.2 822 78.7
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1234.2 822 77.5
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1233.4 823 79.3
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1227.6 822 77.1
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1226.8 822 77.7
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1224.9 822 77.6
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1224.2 823 79.0
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1222.2 831 76.3
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1221.5 822 77.4
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1219.1 822 77.0
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1218.4 823 76.4
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1217.6 821 76.2
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1215.3 822 76.8
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1214.1 823 76.8
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1211.1 824 76.9
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1203.3 823 74.7
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1201.4 822 74.8
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1198.3 824 75.6
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1197.2 822 74.8
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1196.4 823 73.8
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1194.1 822 74.8
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1194.1 822 74.5
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1193.3 822 75.9
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1189.9 822 74.2
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1187.9 822 73.4
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1187.9 822 74.5
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1187.6 830 75.7
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1182.5 827 75.2
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1181.0 829 73.5
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1179.5 822 75.4
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1175.2 820 74.8
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1174.8 824 73.7
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1173.7 822 74.7
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1172.9 824 73.4
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1171.0 824 73.3
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1171.0 822 74.3
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1169.5 824 73.3
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1169.1 824 73.5
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1168.3 823 73.5
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1167.5 852 73.8
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1166.8 823 73.4
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1161.0 838 72.1
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1159.8 824 74.2
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1156.4 822 73.5
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1154.4 822 73.0
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1150.6 822 71.2
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1148.7 716 81.8
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1145.2 823 71.2
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1144.4 823 71.1
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1139.0 822 70.4
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1138.6 825 73.5
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1134.8 822 70.6
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1134.8 822 73.7
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1128.6 826 72.3
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1127.9 822 73.5
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1124.0 825 71.9
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1124.0 828 72.0
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1122.5 822 72.1
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1110.5 824 69.9
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1107.8 836 71.4
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1107.8 836 71.4
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1094.7 832 70.8
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1085.1 824 70.1
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1081.6 838 68.5
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 1.8e-306 1055.8 765 71.8
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 1.7e-304 1049.3 719 74.4
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 3.2e-300 1035.0 813 66.4
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 2.1e-299 1032.3 815 67.2
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 6.5e-293 1010.7 815 65.0
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 2.1e-291 1005.7 609 85.1
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 1.0e-282 976.9 791 66.5
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 1.0e-282 976.9 766 67.4
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 6.3e-280 967.6 770 64.8
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 5.6e-276 954.5 610 79.8
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 6.4e-272 941.0 806 59.7
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 3.4e-257 892.1 610 75.2
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 8.1e-251 870.9 572 77.6
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 2.4e-247 859.4 577 75.7
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 3.9e-229 798.9 779 53.0
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 9.0e-218 761.1 614 63.8
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 1.7e-216 756.9 769 50.2
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 1.4e-215 753.8 760 50.9
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 2.8e-211 739.6 816 52.8
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 5.7e-204 715.3 751 50.3
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 2.9e-168 596.7 488 64.3
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 4.4e-164 582.8 428 73.1
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 2.3e-160 570.5 366 77.6
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 2.0e-153 547.4 358 77.1
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 1.4e-149 534.6 779 39.9
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 5.4e-146 522.7 440 67.5
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 1.3e-102 378.6 318 64.8
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 6.7e-88 329.7 335 59.7
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 3.7e-70 270.8 879 28.8
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 1.4e-69 268.9 820 28.7
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 3.8e-67 260.8 322 49.7
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 4.2e-66 257.3 326 47.9
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 6.4e-38 163.7 155 64.5
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 1.1e-34 152.9 100 81.0
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 7.0e-29 133.7 85 82.4
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 1.3e-27 129.4 85 81.2
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 4.0e-24 117.9 69 79.7
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 8.9e-24 116.7 68 79.4
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 1.5e-18 99.4 202 33.7
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 2.5e-18 98.6 96 50.0
RcHm_v2.0_Chr0c29g0501111 Rosa chinensis HOM05D005483 ORTHO05D000581 1.5e-07 62.8 45 77.8
Lj2g0025677 Lotus japonicus HOM05D005483 ORTHO05D007091 2.0e-07 62.4 73 49.3


User provided reference genes

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