Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 5.4e-262 907.1 464 100.0
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 2.0e-211 739.2 478 79.3
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 8.2e-202 707.2 458 77.7
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 2.0e-200 702.6 458 76.6
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 2.6e-200 702.2 458 76.9
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 7.7e-200 700.7 451 77.2
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 6.5e-199 697.6 458 75.5
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 1.1e-198 696.8 459 75.2
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 2.7e-197 692.2 458 76.0
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 6.1e-197 691.0 456 75.7
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.0e-196 690.3 458 75.8
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 1.8e-196 689.5 456 75.4
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 1.3e-194 683.3 457 74.8
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 4.8e-194 681.4 456 75.4
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 2.4e-193 679.1 450 74.2
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 5.4e-193 677.9 453 74.6
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 5.9e-192 674.5 453 74.4
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 7.7e-192 674.1 451 73.2
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 8.5e-191 670.6 454 74.2
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 1.5e-190 669.8 476 72.3
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 4.2e-190 668.3 476 72.1
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 9.4e-190 667.2 454 73.3
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 9.4e-190 667.2 450 75.1
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.2e-189 666.8 455 73.8
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 1.6e-189 666.4 447 74.9
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 2.1e-189 666.0 448 74.6
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 2.1e-189 666.0 449 75.3
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 2.7e-189 665.6 450 73.8
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 2.7e-189 665.6 453 72.8
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 8.0e-189 664.1 450 74.0
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 1.0e-188 663.7 453 72.4
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 1.8e-188 662.9 453 72.4
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 1.8e-188 662.9 453 72.4
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.8e-188 662.9 450 73.3
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 2.3e-188 662.5 453 72.2
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 2.3e-188 662.5 457 73.7
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 3.0e-188 662.1 447 74.7
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 6.8e-188 661.0 449 74.6
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 8.8e-188 660.6 453 72.8
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 1.2e-187 660.2 449 73.7
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.5e-187 659.8 452 72.6
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 1.5e-187 659.8 449 73.3
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 2.0e-187 659.4 453 72.4
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 2.0e-187 659.4 449 73.3
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 2.6e-187 659.1 448 73.4
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 3.4e-187 658.7 447 74.7
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 3.4e-187 658.7 452 73.9
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 4.4e-187 658.3 454 73.1
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 5.7e-187 657.9 453 72.0
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 5.7e-187 657.9 449 73.3
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 3.7e-186 655.2 455 73.2
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 3.7e-186 655.2 462 71.0
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 4.9e-186 654.8 448 74.1
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.8e-185 652.9 453 72.2
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 2.4e-185 652.5 455 72.7
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 3.1e-185 652.1 451 72.7
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 4.1e-185 651.7 451 73.4
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 9.1e-185 650.6 448 72.1
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 2.0e-184 649.4 476 69.3
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 2.0e-184 649.4 453 71.5
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 2.7e-184 649.0 451 72.9
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 3.5e-184 648.7 448 73.0
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 5.9e-184 647.9 391 82.4
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 1.3e-183 646.7 456 72.4
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 2.3e-183 646.0 458 71.8
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 3.8e-183 645.2 464 70.7
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 6.6e-183 644.4 448 72.1
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 6.6e-183 644.4 455 71.6
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 1.5e-182 643.3 453 70.6
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 1.5e-182 643.3 453 70.6
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 3.3e-182 642.1 508 65.0
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 1.6e-181 639.8 394 79.9
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 2.8e-181 639.0 480 67.5
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 3.6e-181 638.6 456 71.5
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 4.7e-181 638.3 464 70.5
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 3.0e-180 635.6 459 68.8
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 6.8e-180 634.4 454 69.2
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 8.9e-180 634.0 450 69.8
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.2e-179 633.6 450 69.6
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 1.5e-179 633.3 458 69.7
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 1.3e-178 630.2 442 70.1
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 1.3e-178 630.2 442 70.1
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 3.7e-178 628.6 452 70.1
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 3.7e-178 628.6 458 69.2
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 4.1e-177 625.2 450 69.1
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 2.0e-176 622.9 419 73.7
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 1.3e-175 620.2 449 69.0
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 1.7e-175 619.8 467 66.8
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 5.0e-175 618.2 453 70.9
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 6.6e-175 617.8 442 69.7
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 8.6e-175 617.5 474 67.1
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 8.6e-175 617.5 449 70.2
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.4e-172 610.1 416 73.8
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 4.0e-172 608.6 475 64.8
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 6.8e-172 607.8 441 68.3
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 1.2e-171 607.1 449 67.0
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 1.7e-170 603.2 450 66.9
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 5.4e-169 598.2 450 67.1
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 3.9e-167 592.0 468 66.0
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 2.5e-166 589.3 460 63.3
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 3.3e-166 589.0 412 73.1
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 7.3e-166 587.8 460 64.8
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 6.2e-165 584.7 548 57.1
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.4e-164 583.6 444 66.9
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.0e-159 567.4 478 62.1
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.5e-158 563.5 457 64.1
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 2.5e-158 562.8 393 69.7
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 3.2e-153 545.8 474 60.8
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 2.7e-152 542.7 452 61.5
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 3.3e-150 535.8 452 60.0
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 4.3e-150 535.4 404 66.3
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.8e-149 532.7 406 65.3
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 4.7e-149 531.9 444 59.7
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 1.5e-147 526.9 469 62.5
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 8.4e-146 521.2 446 59.0
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 4.6e-144 515.4 446 58.1
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.0e-143 514.2 357 73.7
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 3.0e-143 512.7 385 65.5
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 4.6e-136 488.8 432 58.1
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 1.3e-133 480.7 455 54.7
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.4e-132 476.5 447 59.7
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 2.6e-131 473.0 287 81.2
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 1.9e-129 466.8 444 52.5
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 1.9e-126 456.8 460 50.4
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 2.5e-126 456.4 316 72.8
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 1.1e-124 451.1 395 57.5
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 9.0e-124 448.0 453 49.9
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 5.8e-123 445.3 453 49.4
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 6.5e-122 441.8 456 48.9
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 8.7e-111 404.8 456 48.0
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 2.5e-110 403.3 293 70.0
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.1e-100 371.3 401 51.6
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.8e-100 370.5 252 72.6
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 5.3e-100 369.0 270 70.7
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 8.5e-90 335.1 313 59.4
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.1e-84 318.2 453 40.2
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 8.3e-77 292.0 458 41.0
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 2.6e-70 270.4 193 66.8
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 3.8e-66 256.5 174 72.4
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 5.6e-57 226.1 158 71.5
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 4.9e-53 213.0 129 76.7
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 3.9e-50 203.4 192 52.6
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 2.5e-49 200.7 152 67.1
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 5.8e-46 189.5 180 54.4
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 6.0e-43 179.5 121 70.2
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.6e-32 144.8 130 58.5
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 3.1e-31 140.6 116 63.8
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 6.4e-29 132.9 118 59.3
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 2.4e-28 131.0 93 68.8
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 3.6e-24 117.1 72 77.8
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.6e-22 110.9 118 45.8
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 1.3e-21 108.6 72 69.4
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 1.3e-16 92.0 58 77.6
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 1.1e-15 89.0 61 72.1
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 1.4e-12 78.6 77 53.2
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 7.1e-12 76.3 52 71.2
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.9e-09 68.2 48 64.6


User provided reference genes

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