Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 8.0e-247 856.7 443 100.0
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 8.4e-220 766.9 444 90.1
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 1.7e-212 742.7 444 87.6
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 3.8e-212 741.5 443 87.8
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 3.2e-211 738.4 443 86.2
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 4.6e-210 734.6 441 85.0
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 6.0e-210 734.2 441 86.6
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 1.3e-209 733.0 441 86.4
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 1.3e-209 733.0 444 86.0
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 1.7e-209 732.6 444 85.4
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 3.0e-209 731.9 443 85.8
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 3.9e-209 731.5 445 86.7
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 3.9e-209 731.5 447 85.9
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 2.5e-208 728.8 441 84.6
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 2.5e-208 728.8 441 84.6
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 2.5e-208 728.8 441 85.9
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 2.5e-208 728.8 444 85.4
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 4.3e-208 728.0 445 85.2
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 1.3e-207 726.5 443 85.3
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 1.6e-207 726.1 443 84.0
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 2.8e-207 725.3 445 84.3
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 3.6e-207 724.9 444 84.7
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 3.6e-207 724.9 442 84.6
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 4.8e-207 724.5 443 84.7
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 8.1e-207 723.8 443 85.3
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 1.1e-206 723.4 444 84.7
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 3.1e-206 721.8 443 84.9
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 5.3e-206 721.1 445 85.4
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 6.9e-206 720.7 444 84.2
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.2e-205 719.9 445 84.9
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 1.2e-205 719.9 445 84.0
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.5e-205 719.5 445 83.6
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 2.0e-205 719.2 443 83.5
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 1.3e-204 716.5 443 83.1
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.3e-204 716.5 443 84.0
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 4.9e-204 714.5 443 83.7
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 5.4e-203 711.1 441 84.1
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.2e-202 709.9 443 82.8
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.6e-202 709.5 440 83.4
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 1.6e-202 709.5 441 83.4
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 3.5e-202 708.4 441 83.9
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 4.6e-202 708.0 441 81.9
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 4.6e-202 708.0 443 82.6
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 7.9e-202 707.2 442 82.1
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.0e-201 706.8 441 82.8
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 5.1e-201 704.5 443 82.6
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 6.7e-201 704.1 445 81.6
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 1.1e-200 703.4 441 83.0
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.5e-200 703.0 440 82.5
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 1.9e-200 702.6 443 81.7
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 3.3e-200 701.8 443 81.7
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 1.3e-199 699.9 443 81.7
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 1.6e-199 699.5 445 80.4
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 2.8e-199 698.7 441 81.9
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 2.8e-199 698.7 441 82.1
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 8.1e-199 697.2 443 80.4
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 1.1e-198 696.8 443 82.2
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 1.1e-198 696.8 443 82.2
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 1.4e-198 696.4 443 80.4
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.8e-198 696.0 443 81.5
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 1.8e-198 696.0 443 81.3
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 2.4e-198 695.7 447 80.3
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 3.1e-198 695.3 443 82.2
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 5.3e-198 694.5 444 80.9
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 6.9e-198 694.1 441 81.9
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 9.0e-198 693.7 399 86.7
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 1.5e-197 693.0 443 81.3
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 1.5e-197 693.0 442 82.1
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 2.0e-197 692.6 399 86.5
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 2.6e-197 692.2 443 81.5
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 3.4e-197 691.8 443 81.3
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 4.5e-197 691.4 443 81.5
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 5.8e-197 691.0 442 80.3
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 7.6e-197 690.6 416 84.9
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 7.6e-197 690.6 441 80.3
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 7.6e-197 690.6 443 81.0
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 1.3e-196 689.9 440 81.6
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 2.9e-196 688.7 442 81.4
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 4.9e-196 688.0 442 80.8
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 4.9e-196 688.0 441 81.6
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 6.4e-196 687.6 439 79.3
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 8.4e-196 687.2 445 80.2
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 1.4e-195 686.4 444 79.7
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 3.2e-195 685.3 440 80.9
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 4.2e-195 684.9 441 80.5
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 4.2e-195 684.9 441 80.5
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 5.5e-195 684.5 441 80.5
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 2.7e-194 682.2 442 81.0
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 2.7e-194 682.2 415 84.1
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 3.5e-194 681.8 444 80.6
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 4.6e-194 681.4 441 79.6
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 3.0e-193 678.7 397 85.6
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 3.0e-193 678.7 442 78.3
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 8.7e-193 677.2 442 80.1
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 3.3e-192 675.2 441 79.8
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 5.6e-192 674.5 441 79.4
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 5.6e-192 674.5 441 79.8
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 5.6e-192 674.5 441 79.4
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 3.7e-191 671.8 443 78.8
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 6.2e-191 671.0 441 79.4
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 6.2e-191 671.0 441 79.4
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 3.1e-190 668.7 439 78.1
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 4.0e-190 668.3 443 79.7
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 2.9e-188 662.1 376 87.8
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 6.5e-188 661.0 444 78.2
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 6.7e-185 651.0 401 82.0
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 8.7e-185 650.6 421 79.6
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 3.3e-184 648.7 437 77.8
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 9.7e-184 647.1 485 72.2
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 1.6e-183 646.4 443 76.5
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 2.8e-183 645.6 386 83.2
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 4.8e-183 644.8 491 69.7
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 6.3e-183 644.4 448 75.9
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 4.1e-182 641.7 435 76.3
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 1.3e-180 636.7 444 75.7
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.7e-180 636.3 441 77.3
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 6.5e-180 634.4 391 83.6
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 5.5e-179 631.3 435 76.3
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 5.7e-176 621.3 441 75.1
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 3.4e-173 612.1 381 82.9
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 8.5e-172 607.4 445 74.6
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 6.1e-170 601.3 369 87.0
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 1.9e-163 579.7 392 78.3
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 1.0e-153 547.4 365 79.5
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 1.8e-153 546.6 376 71.8
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 1.2e-152 543.9 372 72.3
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 4.8e-151 538.5 407 65.1
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 1.1e-150 537.3 307 88.6
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 1.2e-146 523.9 363 69.7
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.4e-145 520.4 442 62.2
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.2e-144 517.3 442 62.0
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.0e-144 516.5 442 62.0
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 5.7e-144 515.0 434 63.1
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 4.8e-143 511.9 370 68.9
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.1e-142 510.8 381 66.4
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 1.4e-142 510.4 361 72.0
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.1e-139 500.7 397 63.2
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 2.5e-139 499.6 362 66.3
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 6.1e-138 495.0 364 68.1
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.2e-136 490.7 380 63.2
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 4.1e-134 482.3 318 78.6
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 3.5e-133 479.2 359 65.2
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.0e-132 477.6 381 62.2
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 1.5e-115 420.6 360 61.4
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 9.3e-102 374.8 369 55.8
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.9e-94 350.5 302 61.3
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 3.0e-84 316.6 215 74.9
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 1.3e-71 274.6 187 79.1
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 5.1e-68 262.7 340 43.8
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.2e-61 241.5 139 89.9
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 1.1e-59 235.0 198 60.6
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 2.8e-58 230.3 125 87.2
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 6.9e-57 225.7 160 70.6
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 2.6e-40 170.6 162 55.6
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 7.2e-38 162.5 119 68.9
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 3.6e-37 160.2 165 58.8
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 8.3e-34 149.1 81 91.4
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 1.3e-31 141.7 82 85.4
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 1.5e-27 128.3 117 53.0
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 5.7e-27 126.3 80 72.5
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 1.8e-20 104.8 143 46.9
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 1.1e-17 95.5 51 82.4
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 3.9e-15 87.0 94 51.1
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 4.6e-08 63.5 35 85.7


User provided reference genes

Program Settings