Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.140 Acer truncatum HOM05D002006 ORTHO05D002128 3.8e-57 224.6 109 100.0
Manes.10G006400 Manihot esculenta HOM05D002006 ORTHO05D002128 1.6e-26 122.9 77 72.7
Duzib106G1806 Durio zibethinus HOM05D002006 ORTHO05D002128 7.7e-26 120.6 77 70.1
Thecc.10G172500 Theobroma cacao HOM05D002006 ORTHO05D002128 7.7e-26 120.6 74 70.3
CSS0007075 Camellia sinensis var. sinensis HOM05D002006 ORTHO05D002128 8.6e-25 117.1 75 68.0
Gohir.A05G401700 Gossypium hirsutum HOM05D002006 ORTHO05D002128 1.1e-24 116.7 77 66.2
Gohir.D04G013900 Gossypium hirsutum HOM05D002006 ORTHO05D002128 1.1e-24 116.7 77 66.2
Duzib128G1589 Durio zibethinus HOM05D002006 ORTHO05D002128 3.3e-24 115.2 90 58.9
Lj1C964G6 Lonicera japonica HOM05D002006 ORTHO05D002128 3.3e-24 115.2 75 68.0
Prupe.2G260000 Prunus persica HOM05D002006 ORTHO05D002128 5.5e-24 114.4 74 67.6
Gorai.012G016300 Gossypium raimondii HOM05D002006 ORTHO05D002128 7.2e-24 114.0 77 64.9
TWI53G1315 Tripterygium wilfordii HOM05D002006 ORTHO05D002128 1.2e-23 113.2 73 68.5
Cpa.g.sc19.97 Carica papaya HOM05D002006 ORTHO05D002128 2.1e-23 112.5 98 57.1
COL.COLO4_38202 Corchorus olitorius HOM05D002006 ORTHO05D002128 2.8e-23 112.1 71 70.4
Peaxi162Scf00284g00021 Petunia axillaris HOM05D002006 ORTHO05D002128 2.3e-22 109.0 73 67.1
MSTRG.8906 Avicennia marina HOM05D002006 ORTHO05D002128 4.0e-22 108.2 75 64.0
AUR62012337 Chenopodium quinoa HOM05D002006 ORTHO05D002128 6.8e-22 107.5 73 63.0
TAR633G1468 Trochodendron aralioides HOM05D002006 ORTHO05D002128 1.2e-21 106.7 75 62.7
Oeu024604.1 Olea europaea HOM05D002006 ORTHO05D002128 2.0e-21 105.9 74 64.9
Cc02_g05680 Coffea canephora HOM05D002006 ORTHO05D002128 2.6e-21 105.5 69 69.6
EL10Ac2g04288 Beta vulgaris HOM05D002006 ORTHO05D002128 4.4e-21 104.8 73 60.3
Potri.013G083800 Populus trichocarpa HOM05D002006 ORTHO05D002128 4.4e-21 104.8 77 61.0
Hund13509 Selenicereus undatus HOM05D002006 ORTHO05D002128 9.8e-21 103.6 73 61.6
Nitab4.5_0000263g0130 Nicotiana tabacum HOM05D002006 ORTHO05D002128 1.7e-20 102.8 67 67.2
Ciclev10032355m.g Citrus clementina HOM05D002006 ORTHO05D002128 2.8e-20 102.1 77 63.6
RcHm_v2.0_Chr1g0371521 Rosa chinensis HOM05D002006 ORTHO05D002128 2.8e-20 102.1 74 62.2
Cc02_g05690 Coffea canephora HOM05D002006 ORTHO05D002128 3.7e-20 101.7 73 60.3
FvH4_7g25521 Fragaria vesca HOM05D002006 ORTHO05D002128 3.7e-20 101.7 74 63.5
GSVIVG01032719001 Vitis vinifera HOM05D002006 ORTHO05D002128 4.9e-20 101.3 75 61.3
MD01G1161900 Malus domestica HOM05D002006 ORTHO05D002128 8.3e-20 100.5 79 57.0
Migut.F00581 Erythranthe guttata HOM05D002006 ORTHO05D002128 1.1e-19 100.1 74 59.5
HanXRQChr14g0460311 Helianthus annuus HOM05D002006 ORTHO05D002128 1.1e-19 100.1 76 59.2
DCAR_028544 Daucus carota HOM05D002006 ORTHO05D002128 1.4e-19 99.8 75 57.3
PSO339G2463 Papaver somniferum HOM05D002006 ORTHO05D002128 1.4e-19 99.8 71 62.0
Lj8A58T30 Lonicera japonica HOM05D002006 ORTHO05D002128 1.8e-19 99.4 69 60.9
Solyc06g050860.3 Solanum lycopersicum HOM05D002006 ORTHO05D002128 3.1e-19 98.6 73 60.3
Sopen06g016540 Solanum pennellii HOM05D000002 ORTHO05D000001 3.1e-19 98.6 73 60.3
Actinidia33886 Actinidia chinensis HOM05D002006 ORTHO05D002128 4.1e-19 98.2 75 58.7
CsaV3_6G002140 Cucumis sativus L. HOM05D002006 ORTHO05D002128 4.1e-19 98.2 75 64.0
PSO384G3750 Papaver somniferum HOM05D002006 ORTHO05D002128 4.1e-19 98.2 75 58.7
DCAR_011899 Daucus carota HOM05D002006 ORTHO05D002128 9.2e-19 97.1 74 58.1
AL5G37550 Arabidopsis lyrata HOM05D002006 ORTHO05D002128 1.6e-18 96.3 71 57.7
AT3G56230 Arabidopsis thaliana HOM05D002006 ORTHO05D002128 1.6e-18 96.3 71 57.7
CANSAT56G0943 Cannabis sativa HOM05D002006 ORTHO05D002128 1.6e-18 96.3 74 56.8
BcaC07g39939 Brassica carinata HOM05D002006 ORTHO05D002128 2.0e-18 95.9 77 54.5
BolC8t50777H Brassica oleracea HOM05D002006 ORTHO05D002128 2.0e-18 95.9 77 54.5
Cfa001236 Carpinus fangiana HOM05D002006 ORTHO05D002128 2.0e-18 95.9 75 58.7
Thhalv10006174m.g Eutrema salsugineum HOM05D002006 ORTHO05D002128 2.0e-18 95.9 71 57.7
vmacro06926 Vaccinium macrocarpon HOM05D002006 ORTHO05D002128 2.0e-18 95.9 68 60.3
Aa31LG10G11140 Aethionema arabicum HOM05D002006 ORTHO05D002128 2.7e-18 95.5 71 60.6
A09p49210 Brassica napus HOM05D002006 ORTHO05D002128 2.7e-18 95.5 71 57.7
BraA09t40374Z Brassica rapa HOM05D002006 ORTHO05D002128 2.7e-18 95.5 71 57.7
ECA238G3018 Erigeron canadensis HOM05D002006 ORTHO05D002128 4.5e-18 94.7 76 57.9
Nn2g11079 Nelumbo nucifera HOM05D002006 ORTHO05D002128 4.5e-18 94.7 74 59.5
Sp5g06270 Schrenkiella parvula HOM05D002006 ORTHO05D002128 4.5e-18 94.7 71 56.3
BcaB01g00012 Brassica carinata HOM05D002006 ORTHO05D002128 5.9e-18 94.4 71 57.7
FAN06G2847 Fragaria x ananassa HOM05D002006 ORTHO05D002128 5.9e-18 94.4 69 62.3
Dinv10556 Davidia involucrata HOM05D002006 ORTHO05D002128 7.8e-18 94.0 59 69.5
Thecc.10G172400 Theobroma cacao HOM05D002006 ORTHO05D002128 7.8e-18 94.0 71 63.4
FAN01G3176 Fragaria x ananassa HOM05D002006 ORTHO05D002128 1.0e-17 93.6 67 62.7
FAN10G0941 Fragaria x ananassa HOM05D002006 ORTHO05D002128 1.0e-17 93.6 67 64.2
QL08p064310 Quercus lobata HOM05D002006 ORTHO05D002128 1.0e-17 93.6 76 52.6
C08p31550 Brassica napus HOM05D002006 ORTHO05D002128 1.3e-17 93.2 71 56.3
Carub.0005s2301 Capsella rubella HOM05D002006 ORTHO05D002128 1.3e-17 93.2 71 56.3
CARHR166390 Cardamine hirsuta HOM05D002006 ORTHO05D002128 1.7e-17 92.8 71 54.9
Sed0009037 Sechium edule HOM05D002006 ORTHO05D002128 3.8e-17 91.7 74 59.5
Sc11g0005660 Simmondsia chinensis HOM05D002006 ORTHO05D002128 3.8e-17 91.7 72 56.9
Sabra13G0079300 Salix brachista HOM05D002006 ORTHO05D002128 5.0e-17 91.3 71 54.9
Eucgr.J00138 Eucalyptus grandis HOM05D002006 ORTHO05D002128 6.6e-17 90.9 72 63.9
ClCG11G005850 Citrullus lanatus HOM05D002006 ORTHO05D002128 1.5e-16 89.7 80 57.5
MELO3C030035.2 Cucumis melo HOM05D002006 ORTHO05D002128 2.5e-16 89.0 70 61.4
AUR62022981 Chenopodium quinoa HOM05D002006 ORTHO05D002128 4.3e-16 88.2 59 62.7
Cc00_g05760 Coffea canephora HOM05D002006 ORTHO05D002128 4.3e-16 88.2 69 62.3
SGA_v2.0_scaffold60G20931 Striga asiatica HOM05D002006 ORTHO05D002128 9.5e-16 87.0 75 49.3
Duzib106G0339 Durio zibethinus HOM05D002006 ORTHO05D002128 1.2e-15 86.7 74 55.4
PGSC0003DMG400027977 Solanum tuberosum HOM05D002006 ORTHO05D002128 1.2e-15 86.7 59 64.4
Glyma.11G234900 Glycine max HOM05D002006 ORTHO05D002128 2.1e-15 85.9 74 52.7
Lj6g0006353 Lotus japonicus HOM05D002006 ORTHO05D002128 2.1e-15 85.9 75 53.3
Duzib114G0585 Durio zibethinus HOM05D002006 ORTHO05D002128 2.8e-15 85.5 74 56.8
TPR.G31619 Trifolium pratense HOM05D002006 ORTHO05D002128 3.6e-15 85.1 74 51.4
Medtr3g072160 Medicago truncatula HOM05D002006 ORTHO05D002128 4.7e-15 84.7 74 50.0
unitig_88.g27823 Utricularia gibba HOM05D002006 ORTHO05D002128 4.7e-15 84.7 69 52.2
Aqoxy4G02151 Aquilegia oxysepala HOM05D002006 ORTHO05D002128 6.1e-15 84.3 74 54.1
Lalb_Chr08g0231341 Lupinus albus HOM05D002006 ORTHO05D002128 6.1e-15 84.3 74 48.6
Psat5g132760 Pisum sativum HOM05D002006 ORTHO05D002128 6.1e-15 84.3 74 52.7
CiPaw.01G303800 Carya illinoinensis HOM05D002006 ORTHO05D002128 1.4e-14 83.2 78 47.4
Nitab4.5_0000928g0040 Nicotiana tabacum HOM05D002006 ORTHO05D002128 1.4e-14 83.2 56 64.3
VMungo1383G3230 Vigna mungo HOM05D002006 ORTHO05D002128 1.4e-14 83.2 62 62.9
Glyma.18G022100 Glycine max HOM05D002006 ORTHO05D002128 2.3e-14 82.4 74 48.6
Gohir.D04G014150 Gossypium hirsutum HOM05D002006 ORTHO05D002128 6.8e-14 80.9 73 53.4
MD07G1230000 Malus domestica HOM05D002006 ORTHO05D002128 8.9e-14 80.5 59 59.3
Gorai.012G016500 Gossypium raimondii HOM05D002006 ORTHO05D002128 1.5e-13 79.7 73 52.1
Gorai.012G016600 Gossypium raimondii HOM05D002006 ORTHO05D002128 2.0e-13 79.3 59 61.0
Phvul.001G248300 Phaseolus vulgaris HOM05D002006 ORTHO05D002128 2.0e-13 79.3 46 71.7
Peaxi162Scf01149g00015 Petunia axillaris HOM05D002006 ORTHO05D002128 2.6e-13 79.0 61 57.4
CAN.G203.32 Capsicum annuum HOM05D002006 ORTHO05D002128 3.4e-13 78.6 50 68.0
Gorai.012G016700 Gossypium raimondii HOM05D002006 ORTHO05D002128 7.5e-13 77.4 59 59.3
Gohir.A05G401600 Gossypium hirsutum HOM05D002006 ORTHO05D002128 9.8e-13 77.0 73 52.1
THA.LOC104824350 Tarenaya hassleriana HOM05D002006 ORTHO05D002128 9.8e-13 77.0 71 53.5
arahy.Tifrunner.gnm1.ann1.IXTP9E Arachis hypogaea HOM05D002006 ORTHO05D002128 1.3e-12 76.6 64 50.0
arahy.Tifrunner.gnm1.ann1.5BTP04 Arachis hypogaea HOM05D002006 ORTHO05D002128 1.7e-12 76.3 64 50.0
CDE04G1602 Ceratophyllum demersum HOM05D002006 ORTHO05D002128 1.7e-12 76.3 77 44.2
CDE04G2521 Ceratophyllum demersum HOM05D002006 ORTHO05D002128 1.7e-12 76.3 77 44.2
Duzib128G0784 Durio zibethinus HOM05D002006 ORTHO05D002128 2.2e-12 75.9 55 67.3
PGR044G0271 Punica granatum HOM05D002006 ORTHO05D002128 3.7e-12 75.1 71 50.7
QL93p0107_0112 Quercus lobata HOM05D002006 ORTHO05D002128 6.4e-12 74.3 72 44.4
COL.COLO4_38203 Corchorus olitorius HOM05D002006 ORTHO05D002128 1.1e-11 73.6 59 62.7
PSO384G3568 Papaver somniferum HOM05D002006 ORTHO05D002128 2.4e-11 72.4 90 44.4
AT1G01640 Arabidopsis thaliana HOM05D002006 ORTHO05D002128 2.0e-10 69.3 53 50.9
Carub.0001s0058 Capsella rubella HOM05D002006 ORTHO05D002128 3.5e-10 68.6 53 52.8
Gohir.D04G014000 Gossypium hirsutum HOM05D002006 ORTHO05D002128 6.0e-10 67.8 48 60.4
BcaB03g13601 Brassica carinata HOM05D002006 ORTHO05D002128 7.8e-10 67.4 50 50.0
BolC5t28830H Brassica oleracea HOM05D002006 ORTHO05D002128 7.8e-10 67.4 50 50.0
PSO339G4757 Papaver somniferum HOM05D002006 ORTHO05D002128 1.0e-09 67.0 67 47.8
SGA_v2.0_scaffold60G20933 Striga asiatica HOM05D002006 ORTHO05D002128 1.3e-09 66.6 62 50.0
BraA10t42316Z Brassica rapa HOM05D002006 ORTHO05D002128 1.7e-09 66.2 46 52.2
Cfa001249 Carpinus fangiana HOM05D002006 ORTHO05D002128 1.7e-09 66.2 44 65.9
PSO384G5144 Papaver somniferum HOM05D002006 ORTHO05D002128 1.7e-09 66.2 56 53.6
Aa31LG1G11000 Aethionema arabicum HOM05D002006 ORTHO05D002128 2.3e-09 65.9 53 49.1
Zm00001eb276280 Zea mays HOM05D002006 ORTHO05D002128 2.3e-09 65.9 74 43.2
BcaB01g02249 Brassica carinata HOM05D002006 ORTHO05D002128 3.0e-09 65.5 59 44.1
Haze_17299 Corylus avellana HOM05D002006 ORTHO05D002128 3.9e-09 65.1 96 38.5
Haze_17325 Corylus avellana HOM05D002006 ORTHO05D002128 3.9e-09 65.1 71 46.5
PSO384G0036 Papaver somniferum HOM05D002006 ORTHO05D002128 3.9e-09 65.1 69 47.8
PSO566G0042 Papaver somniferum HOM05D002006 ORTHO05D002128 3.9e-09 65.1 48 58.3
PSO566G0354 Papaver somniferum HOM05D002006 ORTHO05D002128 3.9e-09 65.1 48 58.3
PSO566G0230 Papaver somniferum HOM05D002006 ORTHO05D002128 5.0e-09 64.7 58 50.0
PSO782G0393 Papaver somniferum HOM05D002006 ORTHO05D002128 5.0e-09 64.7 58 46.6
Haze_17313 Corylus avellana HOM05D002006 ORTHO05D002128 6.6e-09 64.3 49 59.2
Thhalv10017613m.g Eutrema salsugineum HOM05D002006 ORTHO05D002128 6.6e-09 64.3 59 44.1
THA.LOC104801406 Tarenaya hassleriana HOM05D002006 ORTHO05D002128 6.6e-09 64.3 53 50.9
PSO384G2245 Papaver somniferum HOM05D002006 ORTHO05D002128 8.6e-09 63.9 68 47.1
Sp1g00680 Schrenkiella parvula HOM05D002006 ORTHO05D002128 8.6e-09 63.9 50 48.0
ATR1127G055 Amborella trichopoda HOM05D002006 ORTHO05D002128 1.1e-08 63.5 62 46.8
CARHR000710 Cardamine hirsuta HOM05D002006 ORTHO05D002128 1.1e-08 63.5 53 47.2
Os11g0111900 Oryza sativa ssp. japonica HOM05D002006 ORTHO05D002128 1.1e-08 63.5 88 39.8
Os12g0111500 Oryza sativa ssp. japonica HOM05D002006 ORTHO05D002128 1.5e-08 63.2 88 38.6
AL8G32150 Arabidopsis lyrata HOM05D002006 ORTHO05D002128 1.9e-08 62.8 49 53.1
BcaC04g24171 Brassica carinata HOM05D002006 ORTHO05D002128 1.9e-08 62.8 51 47.1
C09p00370 Brassica napus HOM05D002006 ORTHO05D002128 1.9e-08 62.8 51 47.1
BolC9t52972H Brassica oleracea HOM05D002006 ORTHO05D002128 1.9e-08 62.8 51 47.1
PSO339G0684 Papaver somniferum HOM05D002006 ORTHO05D002128 1.9e-08 62.8 68 45.6
MD01G1141000 Malus domestica HOM05D002006 ORTHO05D002128 2.5e-08 62.4 49 53.1
PSO339G1739 Papaver somniferum HOM05D002006 ORTHO05D002128 3.3e-08 62.0 64 46.9
A09p00490 Brassica napus HOM05D002006 ORTHO05D002128 4.3e-08 61.6 51 45.1
BraA09t35711Z Brassica rapa HOM05D002006 ORTHO05D002128 4.3e-08 61.6 51 45.1
PSO782G0147 Papaver somniferum HOM05D002006 ORTHO05D002128 4.3e-08 61.6 57 50.9
SEGI_06217 Sequoiadendron giganteum HOM05D002006 ORTHO05D002128 7.3e-08 60.8 61 39.3
Solyc05g052290.3 Solanum lycopersicum HOM05D002006 ORTHO05D002128 1.2e-07 60.1 53 45.3
Sopen05g030850 Solanum pennellii HOM05D002006 ORTHO05D002128 1.2e-07 60.1 53 45.3
ATR0559G013 Amborella trichopoda HOM05D002006 ORTHO05D002128 1.6e-07 59.7 71 43.7
Sp4g18220 Schrenkiella parvula HOM05D002006 ORTHO05D002128 2.1e-07 59.3 49 44.9
AL6G53030 Arabidopsis lyrata HOM05D002006 ORTHO05D002128 2.8e-07 58.9 49 49.0
FAN03G2486 Fragaria x ananassa HOM05D002006 ORTHO05D002128 2.8e-07 58.9 73 43.8
PGSC0003DMG400047169 Solanum tuberosum HOM05D002006 ORTHO05D002128 2.8e-07 58.9 50 48.0
Ciclev10032365m.g Citrus clementina HOM05D002006 ORTHO05D002128 3.6e-07 58.5 74 40.5
FAN10G0010 Fragaria x ananassa HOM05D002006 ORTHO05D002128 4.7e-07 58.2 79 39.2
Gohir.D04G014100 Gossypium hirsutum HOM05D002006 ORTHO05D002128 8.0e-07 57.4 41 61.0
ATR0559G210 Amborella trichopoda HOM05D002006 ORTHO05D002128 1.1e-06 57.0 71 42.3
Thhalv10017771m.g Eutrema salsugineum HOM05D002006 ORTHO05D002128 1.4e-06 56.6 62 35.5
PSO339G1444 Papaver somniferum HOM05D002006 ORTHO05D002128 1.8e-06 56.2 68 39.7
PSO339G4106 Papaver somniferum HOM05D002006 ORTHO05D002128 1.8e-06 56.2 62 46.8
Ciclev10033820m.g Citrus clementina HOM05D002006 ORTHO05D002128 2.3e-06 55.8 50 46.0
PSO832G3417 Papaver somniferum HOM05D002006 ORTHO05D002128 4.0e-06 55.1 46 60.9
A10p00370 Brassica napus HOM05D002006 ORTHO05D002128 5.2e-06 54.7 72 34.7


User provided reference genes

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