Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1331 Acer truncatum HOM05D006553 ORTHO05D008070 3.5e-28 127.5 61 100.0
Atru.chr8.1531 Acer truncatum HOM05D006553 ORTHO05D008070 2.2e-17 91.7 95 55.8
Atru.chr8.1529 Acer truncatum HOM05D006553 ORTHO05D008070 3.7e-17 90.9 89 58.4
Ciclev10012335m.g Citrus clementina HOM05D006553 ORTHO05D008070 1.1e-16 89.4 95 54.7
Dinv21203 Davidia involucrata HOM05D006553 ORTHO05D008070 9.0e-16 86.3 95 51.6
Cc06_g05810 Coffea canephora HOM05D006553 ORTHO05D008070 1.2e-15 85.9 95 49.5
GSVIVG01033848001 Vitis vinifera HOM05D006553 ORTHO05D008070 2.6e-15 84.7 93 51.6
Gohir.D04G099500 Gossypium hirsutum HOM05D006553 ORTHO05D008070 5.9e-15 83.6 95 51.6
Potri.016G098500 Populus trichocarpa HOM05D006553 ORTHO05D008070 5.9e-15 83.6 95 49.5
Cpa.g.sc5.16 Carica papaya HOM05D006553 ORTHO05D008070 7.7e-15 83.2 95 50.5
Thecc.05G089700 Theobroma cacao HOM05D006553 ORTHO05D008070 7.7e-15 83.2 93 50.5
Eucgr.A02662 Eucalyptus grandis HOM05D006553 ORTHO05D008070 1.0e-14 82.8 95 47.4
Actinidia31271 Actinidia chinensis HOM05D006553 ORTHO05D008070 1.3e-14 82.4 95 48.4
DCAR_013388 Daucus carota HOM05D006553 ORTHO05D008070 1.7e-14 82.0 95 49.5
PGR004G2635 Punica granatum HOM05D006553 ORTHO05D008070 1.7e-14 82.0 95 50.5
Solyc01g056880.3 Solanum lycopersicum HOM05D006553 ORTHO05D008070 1.7e-14 82.0 67 64.2
CDE07G1033 Ceratophyllum demersum HOM05D006553 ORTHO05D008070 2.2e-14 81.6 95 49.5
Peaxi162Scf00096g00313 Petunia axillaris HOM05D006553 ORTHO05D008070 2.2e-14 81.6 93 49.5
Sabra16G0099500 Salix brachista HOM05D006553 ORTHO05D008070 2.2e-14 81.6 95 49.5
RcHm_v2.0_Chr3g0473811 Rosa chinensis HOM05D006553 ORTHO05D008070 3.8e-14 80.9 95 48.4
CAN.G1069.17 Capsicum annuum HOM05D006553 ORTHO05D008070 5.0e-14 80.5 95 49.5
Cfa016612 Carpinus fangiana HOM05D006553 ORTHO05D008070 5.0e-14 80.5 93 49.5
CiPaw.09G014600 Carya illinoinensis HOM05D006553 ORTHO05D008070 5.0e-14 80.5 95 48.4
Gohir.A04G062500 Gossypium hirsutum HOM05D006553 ORTHO05D008070 5.0e-14 80.5 99 48.5
Nitab4.5_0013616g0010 Nicotiana tabacum HOM05D006553 ORTHO05D008070 5.0e-14 80.5 95 49.5
Aqoxy2G01179 Aquilegia oxysepala HOM05D006553 ORTHO05D008070 6.5e-14 80.1 95 47.4
CSS0014047 Camellia sinensis var. sinensis HOM05D006553 ORTHO05D008070 6.5e-14 80.1 95 47.4
FvH4_6g18800 Fragaria vesca HOM05D006553 ORTHO05D008070 6.5e-14 80.1 94 47.9
FAN02G1927 Fragaria x ananassa HOM05D006553 ORTHO05D008070 6.5e-14 80.1 94 47.9
Lalb_Chr01g0018141 Lupinus albus HOM05D006553 ORTHO05D008070 6.5e-14 80.1 95 48.4
MBI17_g08341_MAGBIO Magnolia biondii HOM05D006553 ORTHO05D008070 6.5e-14 80.1 92 48.9
Carub.0008s0494 Capsella rubella HOM05D006553 ORTHO05D008070 8.5e-14 79.7 95 46.3
Gorai.009G402400 Gossypium raimondii HOM05D006553 ORTHO05D008070 8.5e-14 79.7 99 48.5
BcaNung05910 Brassica carinata HOM05D006553 ORTHO05D008070 1.1e-13 79.3 93 46.2
Rhsim04G0131900 Rhododendron simsii HOM05D006553 ORTHO05D008070 1.1e-13 79.3 95 49.5
PGSC0003DMG400028255 Solanum tuberosum HOM05D006553 ORTHO05D008070 1.1e-13 79.3 95 48.4
vmacro08867 Vaccinium macrocarpon HOM05D006553 ORTHO05D008070 1.1e-13 79.3 95 48.4
BraA05t22687Z Brassica rapa HOM05D006553 ORTHO05D008070 1.4e-13 79.0 93 46.2
Thhalv10021175m.g Eutrema salsugineum HOM05D006553 ORTHO05D008070 1.4e-13 79.0 95 46.3
MD12G1036600 Malus domestica HOM05D006553 ORTHO05D008070 1.4e-13 79.0 95 48.4
Manes.08G025600 Manihot esculenta HOM05D006553 ORTHO05D008070 1.4e-13 79.0 95 48.4
PSO384G2101 Papaver somniferum HOM05D006553 ORTHO05D008070 1.4e-13 79.0 95 46.3
Sp3g08410 Schrenkiella parvula HOM05D006553 ORTHO05D008070 1.4e-13 79.0 95 45.3
arahy.Tifrunner.gnm1.ann1.J3GQ4Y Arachis hypogaea HOM05D006553 ORTHO05D008070 1.9e-13 78.6 95 47.4
arahy.Tifrunner.gnm1.ann1.8A6FDN Arachis hypogaea HOM05D006553 ORTHO05D008070 2.5e-13 78.2 95 46.3
BcaNung06241 Brassica carinata HOM05D006553 ORTHO05D008070 2.5e-13 78.2 93 45.2
BolC5t34455H Brassica oleracea HOM05D006553 ORTHO05D008070 2.5e-13 78.2 93 45.2
Haze_19616 Corylus avellana HOM05D006553 ORTHO05D008070 2.5e-13 78.2 93 48.4
FAN05G5318 Fragaria x ananassa HOM05D006553 ORTHO05D008070 2.5e-13 78.2 94 46.8
Hma1.2p1_0232F.1_g097970 Hydrangea macrophylla HOM05D006553 ORTHO05D008070 2.5e-13 78.2 92 46.7
Solyc10g083350.2 Solanum lycopersicum HOM05D006553 ORTHO05D008070 2.5e-13 78.2 95 48.4
Sopen10g032850 Solanum pennellii HOM05D006553 ORTHO05D008070 2.5e-13 78.2 95 48.4
Zm00001eb242810 Zea mays HOM05D006553 ORTHO05D008070 2.5e-13 78.2 93 48.4
Os02g0533200 Oryza sativa ssp. japonica HOM05D006553 ORTHO05D008070 3.2e-13 77.8 91 48.4
PSO339G0456 Papaver somniferum HOM05D006553 ORTHO05D008070 3.2e-13 77.8 95 45.3
TAR636G1909 Trochodendron aralioides HOM05D006553 ORTHO05D008070 4.2e-13 77.4 95 47.4
CANSAT64G1380 Cannabis sativa HOM05D006553 ORTHO05D008070 5.5e-13 77.0 93 45.2
Lj3A997G43 Lonicera japonica HOM05D006553 ORTHO05D008070 5.5e-13 77.0 93 47.3
Lj1g0017162 Lotus japonicus HOM05D006553 ORTHO05D008070 5.5e-13 77.0 93 46.2
Nn2g14162 Nelumbo nucifera HOM05D006553 ORTHO05D008070 5.5e-13 77.0 95 46.3
AT3G10130 Arabidopsis thaliana HOM05D006553 ORTHO05D008070 7.2e-13 76.6 95 44.2
Sed0026247 Sechium edule HOM05D006553 ORTHO05D008070 7.2e-13 76.6 93 46.2
ECA236G1922 Erigeron canadensis HOM05D006553 ORTHO05D008070 9.4e-13 76.3 95 45.3
Migut.L01780 Erythranthe guttata HOM05D006553 ORTHO05D008070 9.4e-13 76.3 95 48.4
QL07p038710 Quercus lobata HOM05D006553 ORTHO05D008070 9.4e-13 76.3 94 45.7
QL07p038960 Quercus lobata HOM05D006553 ORTHO05D008070 9.4e-13 76.3 94 45.7
THA.LOC104816396 Tarenaya hassleriana HOM05D006553 ORTHO05D008070 9.4e-13 76.3 94 44.7
FAN05G5513 Fragaria x ananassa HOM05D006553 ORTHO05D008070 1.2e-12 75.9 94 45.7
Glyma.19G194936 Glycine max HOM05D006553 ORTHO05D008070 1.6e-12 75.5 95 47.4
Hund19930 Selenicereus undatus HOM05D006553 ORTHO05D008070 1.6e-12 75.5 95 45.3
SGA_v2.0_scaffold35G14069 Striga asiatica HOM05D006553 ORTHO05D008070 2.1e-12 75.1 93 45.2
Lsat_1_v5_gn_8_77160 Lactuca sativa HOM05D006553 ORTHO05D008070 2.7e-12 74.7 95 45.3
Aa31LG3G2660 Aethionema arabicum HOM05D006553 ORTHO05D008070 4.6e-12 73.9 95 43.2
EL10Ac7g16914 Beta vulgaris HOM05D006553 ORTHO05D008070 4.6e-12 73.9 93 44.1
CARHR084610 Cardamine hirsuta HOM05D006553 ORTHO05D008070 4.6e-12 73.9 95 44.2
COL.COLO4_29728 Corchorus olitorius HOM05D006553 ORTHO05D008070 1.0e-11 72.8 111 39.6
SalBow5G0069 Salvia bowleyana HOM05D006553 ORTHO05D008070 1.0e-11 72.8 92 45.7
ClCG10G018950 Citrullus lanatus HOM05D006553 ORTHO05D008070 1.4e-11 72.4 93 44.1
HanXRQChr05g0133131 Helianthus annuus HOM05D006553 ORTHO05D008070 1.4e-11 72.4 95 44.2
Ah.08g210560 Amaranthus hybridus HOM05D006553 ORTHO05D008070 1.8e-11 72.0 92 44.6
Ca_09008_v3 Cicer arietinum L. HOM05D006553 ORTHO05D008070 1.8e-11 72.0 95 46.3
MSTRG.10367 Avicennia marina HOM05D006553 ORTHO05D008070 2.3e-11 71.6 92 45.7
Phvul.001G190400 Phaseolus vulgaris HOM05D006553 ORTHO05D008070 2.3e-11 71.6 90 46.7
TWI77G0457 Tripterygium wilfordii HOM05D006553 ORTHO05D008070 5.1e-11 70.5 92 46.7
ATR0776G018 Amborella trichopoda HOM05D006553 ORTHO05D008070 6.7e-11 70.1 93 40.9
MELO3C009475.2 Cucumis melo HOM05D006553 ORTHO05D008070 6.7e-11 70.1 93 41.9
VMungo1383G0588 Vigna mungo HOM05D006553 ORTHO05D008070 8.8e-11 69.7 90 46.7
CsaV3_3G037300 Cucumis sativus L. HOM05D006553 ORTHO05D008070 1.1e-10 69.3 93 41.9
A05p38960 Brassica napus HOM05D006553 ORTHO05D008070 1.5e-10 68.9 117 36.8
C05p57990 Brassica napus HOM05D006553 ORTHO05D008070 3.3e-10 67.8 117 35.9
Medtr7g104650 Medicago truncatula HOM05D006553 ORTHO05D008070 5.7e-10 67.0 95 44.2
HPP92_006351 Vanilla planifolia HOM05D006553 ORTHO05D008070 9.7e-10 66.2 92 42.4
TPR.G19533 Trifolium pratense HOM05D006553 ORTHO05D008070 2.2e-09 65.1 95 42.1
SEGI_29247 Sequoiadendron giganteum HOM05D006553 ORTHO05D008070 3.7e-09 64.3 95 37.9
Hma1.2p1_0232F.1_g097960 Hydrangea macrophylla HOM05D006553 ORTHO05D008070 4.5e-07 57.4 34 73.5
DCAR_029780 Daucus carota HOM05D002603 ORTHO05D002907 5.9e-07 57.0 36 72.2
Sc20g0006300 Simmondsia chinensis HOM05D006553 ORTHO05D008070 1.0e-06 56.2 34 79.4
Pp3c23_15420 Physcomitrium patens HOM05D006553 ORTHO05D008070 1.3e-06 55.8 90 35.6
Solyc05g047480.2 Solanum lycopersicum HOM05D006553 ORTHO05D008070 2.2e-06 55.1 34 76.5
Zm00001eb034360 Zea mays HOM05D006553 ORTHO05D008070 3.8e-06 54.3 34 73.5
Zm00001eb215690 Zea mays HOM05D006553 ORTHO05D008070 5.0e-06 53.9 35 71.4
Zm00001eb215700 Zea mays HOM05D006553 ORTHO05D008070 6.5e-06 53.5 35 71.4
unitig_8.g4964 Utricularia gibba HOM05D006553 ORTHO05D008070 8.5e-06 53.1 34 70.6


User provided reference genes

Program Settings