Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 3.7e-160 568.2 287 100.0
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 1.5e-124 449.9 302 78.1
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 4.3e-116 421.8 275 77.5
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 1.6e-115 419.9 288 76.0
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 2.8e-115 419.1 278 77.0
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 1.8e-114 416.4 292 75.0
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 1.8e-114 416.4 272 77.2
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 1.5e-113 413.3 266 78.9
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 3.4e-113 412.1 262 79.4
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 3.4e-113 412.1 262 79.4
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 4.4e-113 411.8 303 71.0
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 5.8e-113 411.4 287 73.2
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 9.9e-113 410.6 278 75.5
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 2.2e-112 409.5 276 76.4
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 2.9e-112 409.1 279 74.9
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 3.7e-112 408.7 271 77.1
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 6.4e-112 407.9 298 71.1
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 8.3e-112 407.5 297 72.1
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 8.3e-112 407.5 298 72.8
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 1.4e-111 406.8 279 75.3
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 2.4e-111 406.0 294 71.1
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 4.1e-111 405.2 265 78.1
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 7.1e-111 404.4 289 72.3
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 7.1e-111 404.4 302 71.5
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 7.1e-111 404.4 302 71.5
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 1.2e-110 403.7 280 73.2
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 1.6e-110 403.3 289 72.0
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 1.6e-110 403.3 271 77.1
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 2.1e-110 402.9 265 77.0
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 3.5e-110 402.1 297 70.7
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 3.5e-110 402.1 268 76.9
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 3.5e-110 402.1 261 78.2
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 4.6e-110 401.7 272 75.7
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 7.8e-110 401.0 261 78.2
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 1.0e-109 400.6 273 74.4
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 1.3e-109 400.2 289 71.6
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 1.3e-109 400.2 287 71.8
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 1.3e-109 400.2 296 72.3
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 1.7e-109 399.8 265 76.6
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 1.7e-109 399.8 273 75.1
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 5.1e-109 398.3 275 74.2
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 6.6e-109 397.9 274 73.4
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 6.6e-109 397.9 273 75.5
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 6.6e-109 397.9 272 73.2
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 8.6e-109 397.5 271 75.3
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 1.1e-108 397.1 274 73.0
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 1.1e-108 397.1 293 70.0
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 1.9e-108 396.4 301 68.1
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 3.3e-108 395.6 279 72.8
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 3.3e-108 395.6 294 70.4
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 3.3e-108 395.6 261 75.9
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 3.3e-108 395.6 273 74.4
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 3.3e-108 395.6 266 73.3
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 4.3e-108 395.2 266 73.3
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 5.6e-108 394.8 275 74.2
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 7.3e-108 394.4 274 72.6
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 9.5e-108 394.0 267 75.3
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 2.1e-107 392.9 325 64.6
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 2.1e-107 392.9 276 73.2
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 2.8e-107 392.5 266 75.2
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 2.8e-107 392.5 266 75.6
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 2.8e-107 392.5 288 69.4
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 3.6e-107 392.1 288 70.8
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 4.7e-107 391.7 275 71.6
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 4.7e-107 391.7 289 70.6
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 4.7e-107 391.7 294 70.1
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 6.2e-107 391.3 306 66.7
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 6.2e-107 391.3 277 72.9
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 6.2e-107 391.3 296 70.3
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 8.1e-107 391.0 295 68.5
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 1.4e-106 390.2 280 72.9
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 2.4e-106 389.4 287 72.1
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 5.2e-106 388.3 288 70.5
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 6.8e-106 387.9 282 71.6
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 2.0e-105 386.3 275 72.4
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.0e-105 386.3 266 72.2
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 3.4e-105 385.6 288 70.5
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 7.6e-105 384.4 276 71.0
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 7.6e-105 384.4 276 71.0
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 1.7e-104 383.3 267 72.7
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 2.2e-104 382.9 280 70.7
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 2.9e-104 382.5 270 72.6
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 1.9e-103 379.8 269 73.2
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 3.2e-103 379.0 277 70.0
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 9.2e-103 377.5 294 68.0
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.2e-102 377.1 294 66.0
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 2.1e-102 376.3 260 73.8
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 3.5e-102 375.6 261 72.8
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 1.7e-101 373.2 244 77.9
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 2.3e-101 372.9 289 67.8
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 3.9e-101 372.1 266 74.8
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 1.5e-100 370.2 280 66.4
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 9.6e-100 367.5 256 72.7
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 2.6e-97 359.4 256 71.1
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 7.6e-97 357.8 281 64.4
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 7.1e-95 351.3 248 73.0
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 6.0e-94 348.2 251 72.5
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 1.0e-93 347.4 260 68.8
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 1.5e-92 343.6 252 70.2
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 2.5e-92 342.8 298 62.8
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 3.3e-92 342.4 223 76.2
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 4.8e-91 338.6 256 68.8
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 4.8e-91 338.6 260 66.2
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 6.2e-91 338.2 283 65.4
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.4e-90 337.0 337 55.8
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 1.5e-89 333.6 262 67.2
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 4.5e-89 332.0 246 70.3
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 9.9e-89 330.9 270 63.7
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 2.4e-87 326.2 229 72.9
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 1.2e-86 323.9 170 94.1
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.7e-86 322.8 259 65.6
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 5.1e-85 318.5 218 74.3
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 6.7e-85 318.2 228 73.7
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 1.6e-83 313.5 279 59.1
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 6.2e-83 311.6 234 70.9
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 9.9e-81 304.3 214 73.8
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 3.2e-79 299.3 266 61.3
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 3.9e-77 292.4 258 58.5
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 2.5e-76 289.7 283 56.9
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 4.3e-76 288.9 204 75.0
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 2.8e-75 286.2 259 61.4
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 1.0e-69 267.7 272 55.5
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 1.3e-67 260.8 159 79.9
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.1e-66 257.7 229 59.8
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 4.5e-65 252.3 159 80.5
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 7.9e-62 241.5 156 76.3
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.0e-61 239.6 183 65.6
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 4.3e-60 235.7 139 82.7
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.7e-59 232.6 183 63.4
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 2.0e-57 226.9 164 72.6
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 9.7e-52 208.0 168 66.7
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 2.2e-51 206.8 169 65.7
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 5.3e-50 202.2 141 73.0
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 7.2e-47 191.8 112 82.1
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 7.2e-47 191.8 112 82.1
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 9.4e-47 191.4 114 81.6
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 4.7e-46 189.1 114 79.8
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 1.4e-45 187.6 269 40.9
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 5.5e-39 165.6 288 37.8
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.6e-36 156.8 140 59.3
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 5.7e-36 155.6 101 80.2
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 7.0e-34 148.7 180 46.7
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 1.6e-33 147.5 139 54.7
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 4.5e-33 146.0 92 79.3
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.0e-32 144.8 115 67.0
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.5e-31 140.2 113 63.7
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 4.7e-30 136.0 85 78.8
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 4.8e-27 125.9 139 51.1
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 1.1e-26 124.8 83 73.5
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.8e-26 124.0 97 56.7
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 1.6e-25 120.9 68 88.2
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 4.2e-23 112.8 69 81.2
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 4.2e-23 112.8 69 76.8
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 1.8e-21 107.5 72 73.6
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 1.0e-16 91.7 79 65.8
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.5e-15 87.0 84 53.6
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 2.1e-14 84.0 50 78.0
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 2.1e-14 84.0 50 78.0
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 5.2e-13 79.3 59 67.8
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 7.5e-12 75.5 49 71.4
SEGI_40272 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 2.1e-06 57.4 34 73.5


User provided reference genes

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