Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 2.7e-106 388.7 191 100.0
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 2.5e-104 382.1 191 96.9
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 4.3e-104 381.3 191 95.8
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 5.6e-104 380.9 191 96.3
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 7.3e-104 380.6 191 96.9
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 2.8e-103 378.6 191 96.3
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 3.6e-103 378.3 191 95.8
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 3.6e-103 378.3 191 95.8
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 3.6e-103 378.3 191 95.3
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 4.7e-103 377.9 191 95.3
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 6.2e-103 377.5 189 96.3
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 6.2e-103 377.5 191 95.8
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 8.0e-103 377.1 191 95.3
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 1.0e-102 376.7 191 95.3
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 1.0e-102 376.7 191 95.3
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.4e-102 376.3 191 95.3
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 1.4e-102 376.3 189 95.8
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 1.8e-102 375.9 191 96.3
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 2.3e-102 375.6 191 94.8
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 3.1e-102 375.2 188 94.7
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 3.1e-102 375.2 191 95.3
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 3.1e-102 375.2 190 95.3
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 3.1e-102 375.2 190 95.3
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 4.0e-102 374.8 191 94.2
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 5.2e-102 374.4 190 95.3
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 8.9e-102 373.6 189 94.7
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 8.9e-102 373.6 191 93.7
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 1.2e-101 373.2 189 95.2
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.2e-101 373.2 189 95.2
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.2e-101 373.2 189 95.2
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 1.5e-101 372.9 191 94.2
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 1.5e-101 372.9 189 94.7
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 3.4e-101 371.7 191 94.2
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 3.4e-101 371.7 190 95.3
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 3.4e-101 371.7 189 94.7
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 4.4e-101 371.3 191 93.7
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 4.4e-101 371.3 189 95.2
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 4.4e-101 371.3 191 94.8
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 5.8e-101 370.9 189 94.7
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 5.8e-101 370.9 191 92.7
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 1.7e-100 369.4 191 93.7
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 2.2e-100 369.0 191 92.7
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 2.2e-100 369.0 191 93.2
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 2.9e-100 368.6 191 92.7
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 3.7e-100 368.2 191 93.7
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 4.9e-100 367.9 189 93.1
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 6.4e-100 367.5 188 93.6
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 6.4e-100 367.5 191 92.7
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 1.1e-99 366.7 191 91.6
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 1.9e-99 365.9 191 93.2
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 2.4e-99 365.5 191 91.6
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 2.4e-99 365.5 191 92.7
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 3.2e-99 365.2 191 93.7
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 3.2e-99 365.2 191 91.6
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 3.2e-99 365.2 191 92.7
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 3.2e-99 365.2 191 92.7
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 3.2e-99 365.2 191 92.7
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 3.2e-99 365.2 191 92.7
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 4.1e-99 364.8 195 92.3
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 5.4e-99 364.4 191 93.2
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 9.2e-99 363.6 191 92.1
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 9.2e-99 363.6 188 93.6
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 1.2e-98 363.2 191 90.6
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 1.2e-98 363.2 191 91.1
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 1.2e-98 363.2 189 92.1
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 1.2e-98 363.2 191 92.7
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 3.5e-98 361.7 210 85.2
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 4.6e-98 361.3 191 90.1
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 6.0e-98 360.9 201 89.1
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 7.8e-98 360.5 216 83.3
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 7.8e-98 360.5 191 91.1
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 1.7e-97 359.4 189 91.5
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 2.3e-97 359.0 189 91.5
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 2.3e-97 359.0 188 92.0
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 3.9e-97 358.2 198 88.4
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 3.9e-97 358.2 191 89.5
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 5.0e-97 357.8 201 88.1
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 1.5e-96 356.3 188 90.4
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 2.5e-96 355.5 188 92.0
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 4.3e-96 354.8 189 88.9
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 7.3e-96 354.0 191 88.0
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 9.5e-96 353.6 232 78.0
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 2.1e-95 352.4 191 86.9
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 2.8e-95 352.1 191 87.4
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 3.6e-95 351.7 214 82.7
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 6.2e-95 350.9 183 92.9
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 8.1e-95 350.5 188 87.8
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 1.8e-94 349.4 188 87.2
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 2.3e-94 349.0 188 87.2
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 3.1e-94 348.6 188 86.7
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 4.0e-94 348.2 191 84.8
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 6.8e-94 347.4 188 87.2
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 1.2e-93 346.7 193 87.6
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 2.0e-93 345.9 188 87.2
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 2.9e-92 342.0 191 83.8
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 8.3e-92 340.5 191 82.2
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 1.0e-89 333.6 189 81.0
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.3e-89 333.2 181 90.1
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.3e-89 333.2 181 90.1
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.3e-89 332.4 189 81.0
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 5.1e-89 331.3 191 79.6
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 1.9e-88 329.3 173 91.9
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 4.3e-88 328.2 173 89.0
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 7.3e-88 327.4 191 82.7
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 8.1e-87 323.9 191 77.5
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 4.4e-85 318.2 160 95.0
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 4.4e-85 318.2 167 91.6
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.7e-84 316.2 188 76.1
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.9e-84 315.5 188 76.6
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 8.4e-84 313.9 160 92.5
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 1.3e-81 306.6 160 91.2
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 2.4e-78 295.8 161 89.4
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 7.1e-75 284.3 171 82.5
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 5.6e-72 274.6 209 68.4
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 1.1e-67 260.4 188 67.0
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 3.3e-64 248.8 140 86.4
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.2e-61 240.4 188 62.8
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.4e-59 232.6 183 60.7
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 1.0e-57 227.3 113 94.7
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 2.3e-57 226.1 149 74.5
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 3.3e-56 222.2 206 52.9
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 6.2e-55 218.0 129 84.5
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 5.8e-53 211.5 112 90.2
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 1.7e-52 209.9 109 93.6
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 2.2e-52 209.5 109 92.7
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 6.5e-52 208.0 158 65.8
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 3.2e-51 205.7 106 87.7
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 2.1e-50 203.0 109 91.7
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 4.3e-40 168.7 82 95.1
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.3e-39 167.2 82 93.9
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 2.8e-39 166.0 82 92.7
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 1.8e-38 163.3 80 93.8
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 2.0e-37 159.8 83 88.0
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 2.6e-37 159.5 84 92.9
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 9.4e-35 151.0 156 48.1
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 2.1e-34 149.8 81 90.1
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 1.4e-33 147.1 74 90.5
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 5.7e-32 141.7 71 93.0
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 2.2e-31 139.8 71 88.7
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 1.3e-28 130.6 87 78.2
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 5.5e-27 125.2 68 83.8
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 2.7e-26 122.9 68 82.4
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 2.7e-26 122.9 68 82.4
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 2.5e-19 99.8 51 86.3
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 1.0e-17 94.4 47 87.2
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 6.5e-12 75.1 38 86.8
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 6.5e-12 75.1 38 86.8
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 6.5e-12 75.1 38 86.8
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 6.5e-12 75.1 38 86.8
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 8.5e-12 74.7 37 89.2


User provided reference genes

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