Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1293 Acer truncatum HOM05D004197 ORTHO05D004975 8.4e-66 253.4 120 100.0
Atru.chr4.2919 Acer truncatum HOM05D004197 ORTHO05D004975 9.3e-65 250.0 120 97.5
Hma1.2p1_0307F.1_g119895 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 6.2e-61 237.3 120 89.2
Thecc.04G166300 Theobroma cacao HOM05D004197 ORTHO05D004975 6.2e-61 237.3 120 90.0
CiPaw.11G096400 Carya illinoinensis HOM05D004197 ORTHO05D004975 1.8e-60 235.7 120 89.2
Duzib151G0052 Durio zibethinus HOM05D004197 ORTHO05D004975 1.8e-60 235.7 120 89.2
Gohir.A10G143100 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.4e-60 235.3 120 90.0
Gorai.011G136700 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.4e-60 235.3 120 90.0
Gorai.012G053000 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.4e-60 235.3 120 90.0
Gohir.A05G367700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 6.9e-60 233.8 120 89.2
Duzib212G0574 Durio zibethinus HOM05D004197 ORTHO05D004975 9.0e-60 233.4 120 89.2
Gohir.D10G123800 Gossypium hirsutum HOM05D004197 ORTHO05D004975 9.0e-60 233.4 120 89.2
Cpa.g.sc10.180 Carica papaya HOM05D004197 ORTHO05D004975 1.2e-59 233.0 120 87.5
Gohir.D04G047600 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.2e-59 233.0 120 89.2
CSS0039414 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 1.5e-59 232.6 120 88.3
CSS0047181 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 1.5e-59 232.6 120 88.3
Eucgr.G02225 Eucalyptus grandis HOM05D004197 ORTHO05D004975 2.0e-59 232.3 120 87.5
Dinv33200 Davidia involucrata HOM05D004197 ORTHO05D004975 2.6e-59 231.9 119 86.6
Phvul.003G238300 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 3.4e-59 231.5 120 88.3
Glyma.17G164900 Glycine max HOM05D004197 ORTHO05D004975 7.6e-59 230.3 120 86.7
ATR0733G162 Amborella trichopoda HOM05D004197 ORTHO05D004975 1.3e-58 229.6 120 88.3
QL10p055721 Quercus lobata HOM05D004197 ORTHO05D004975 1.3e-58 229.6 119 89.1
CiPaw.12G066300 Carya illinoinensis HOM05D004197 ORTHO05D004975 1.7e-58 229.2 120 85.0
Nn1g09691 Nelumbo nucifera HOM05D004197 ORTHO05D004975 1.7e-58 229.2 120 85.0
TWI32G1250 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 1.7e-58 229.2 120 85.8
GSVIVG01038138001 Vitis vinifera HOM05D004197 ORTHO05D004975 2.9e-58 228.4 120 86.7
VMungo0251G3068 Vigna mungo HOM05D004197 ORTHO05D004975 3.8e-58 228.0 120 86.7
Ah.13g073520 Amaranthus hybridus HOM05D004197 ORTHO05D004975 4.9e-58 227.6 120 85.8
EL10Ac6g15364 Beta vulgaris HOM05D004197 ORTHO05D004975 4.9e-58 227.6 120 87.5
Rhsim03G0176800 Rhododendron simsii HOM05D004197 ORTHO05D004975 4.9e-58 227.6 119 84.9
Cfa015042 Carpinus fangiana HOM05D004197 ORTHO05D004975 6.5e-58 227.3 120 85.8
arahy.Tifrunner.gnm1.ann1.4JR04K Arachis hypogaea HOM05D004197 ORTHO05D004975 1.9e-57 225.7 120 86.7
arahy.Tifrunner.gnm1.ann1.5DCW4K Arachis hypogaea HOM05D004197 ORTHO05D004975 1.9e-57 225.7 120 86.7
Glyma.05G102000 Glycine max HOM05D004197 ORTHO05D004975 1.9e-57 225.7 120 85.8
arahy.Tifrunner.gnm1.ann1.E9H45Q Arachis hypogaea HOM05D004197 ORTHO05D004975 2.5e-57 225.3 119 86.6
AUR62023799 Chenopodium quinoa HOM05D004197 ORTHO05D004975 3.2e-57 224.9 120 85.0
Lj1g0017974 Lotus japonicus HOM05D004197 ORTHO05D004975 4.2e-57 224.6 120 85.8
CDE02G1869 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 5.5e-57 224.2 119 83.2
Ciclev10022904m.g Citrus clementina HOM05D004197 ORTHO05D004975 5.5e-57 224.2 120 84.2
Ca_10539_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 7.1e-57 223.8 120 85.0
Ca_23424_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 7.1e-57 223.8 120 85.8
Psat1g223520 Pisum sativum HOM05D004197 ORTHO05D004975 7.1e-57 223.8 120 85.8
PGR142G4086 Punica granatum HOM05D004197 ORTHO05D004975 7.1e-57 223.8 120 84.2
CARHR170020 Cardamine hirsuta HOM05D004197 ORTHO05D004975 9.3e-57 223.4 120 86.7
Aa31LG10G13940 Aethionema arabicum HOM05D004197 ORTHO05D004975 1.2e-56 223.0 120 86.7
AL5G41720 Arabidopsis lyrata HOM05D004197 ORTHO05D004975 1.2e-56 223.0 120 86.7
Carub.0005s2637 Capsella rubella HOM05D004197 ORTHO05D004975 1.2e-56 223.0 120 86.7
Lalb_Chr04g0253841 Lupinus albus HOM05D004197 ORTHO05D004975 1.2e-56 223.0 120 85.0
AT3G59650 Arabidopsis thaliana HOM05D004197 ORTHO05D004975 1.6e-56 222.6 120 85.8
Lalb_Chr10g0101191 Lupinus albus HOM05D004197 ORTHO05D004975 2.7e-56 221.9 120 82.5
HPP92_007604 Vanilla planifolia HOM05D004197 ORTHO05D004975 2.7e-56 221.9 120 81.7
Medtr8g022770 Medicago truncatula HOM05D004197 ORTHO05D004975 6.0e-56 220.7 120 85.0
Hund04335 Selenicereus undatus HOM05D004197 ORTHO05D004975 6.0e-56 220.7 120 84.2
BcaC07g40496 Brassica carinata HOM05D004197 ORTHO05D004975 1.3e-55 219.5 120 85.8
A09p51920 Brassica napus HOM05D004197 ORTHO05D004975 1.3e-55 219.5 120 85.8
C08p34650 Brassica napus HOM05D004197 ORTHO05D004975 1.3e-55 219.5 120 85.8
BolC8t51067H Brassica oleracea HOM05D004197 ORTHO05D004975 1.3e-55 219.5 120 85.8
BraA09t40628Z Brassica rapa HOM05D004197 ORTHO05D004975 1.3e-55 219.5 120 85.8
BcaC08g44998 Brassica carinata HOM05D004197 ORTHO05D004975 1.8e-55 219.2 120 85.8
A07p24720 Brassica napus HOM05D000455 ORTHO05D000434 1.8e-55 219.2 120 85.8
C06p26290 Brassica napus HOM05D000455 ORTHO05D000434 1.8e-55 219.2 120 85.8
BolC6t37793H Brassica oleracea HOM05D004197 ORTHO05D004975 1.8e-55 219.2 120 85.8
BraA07t30117Z Brassica rapa HOM05D004197 ORTHO05D004975 1.8e-55 219.2 120 85.8
Sp5g03530 Schrenkiella parvula HOM05D004197 ORTHO05D004975 1.8e-55 219.2 120 85.8
EL10Ac3g06082 Beta vulgaris HOM05D004197 ORTHO05D004975 2.3e-55 218.8 120 81.7
BcaB02g07455 Brassica carinata HOM05D004197 ORTHO05D004975 2.3e-55 218.8 120 85.8
Thhalv10006316m.g Eutrema salsugineum HOM05D004197 ORTHO05D004975 2.3e-55 218.8 120 85.0
THA.LOC104804007 Tarenaya hassleriana HOM05D004197 ORTHO05D004975 3.0e-55 218.4 120 81.7
FvH4_7g06200 Fragaria vesca HOM05D004197 ORTHO05D004975 3.9e-55 218.0 120 84.2
Psat4g166320 Pisum sativum HOM05D004197 ORTHO05D004975 5.1e-55 217.6 120 82.5
Prupe.1G206900 Prunus persica HOM05D004197 ORTHO05D004975 6.7e-55 217.2 120 81.7
TPR.G16667 Trifolium pratense HOM05D004197 ORTHO05D004975 6.7e-55 217.2 119 83.2
Os03g0207250 Oryza sativa ssp. japonica HOM05D004197 ORTHO05D004975 8.7e-55 216.9 120 81.7
Phvul.010G124900 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 8.7e-55 216.9 111 89.2
RcHm_v2.0_Chr1g0333831 Rosa chinensis HOM05D004197 ORTHO05D004975 8.7e-55 216.9 120 84.2
FAN01G1948 Fragaria x ananassa HOM05D004197 ORTHO05D004975 1.1e-54 216.5 120 83.3
FAN06G1493 Fragaria x ananassa HOM05D004197 ORTHO05D004975 1.1e-54 216.5 120 83.3
Cc02_g26370 Coffea canephora HOM05D004197 ORTHO05D004975 2.5e-54 215.3 120 82.5
FAN03G3355 Fragaria x ananassa HOM05D004197 ORTHO05D004975 2.5e-54 215.3 120 82.5
PSO832G1844 Papaver somniferum HOM05D004197 ORTHO05D004975 3.3e-54 214.9 119 81.5
TWI34G1638 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 3.3e-54 214.9 144 72.2
Aqoxy7G00569 Aquilegia oxysepala HOM05D004197 ORTHO05D004975 4.3e-54 214.5 120 79.2
Lsat_1_v5_gn_6_33001 Lactuca sativa HOM05D004197 ORTHO05D004975 7.4e-54 213.8 120 82.5
ClCG07G015230 Citrullus lanatus HOM05D004197 ORTHO05D004975 9.7e-54 213.4 120 82.5
Manes.06G021100 Manihot esculenta HOM05D004197 ORTHO05D004975 9.7e-54 213.4 120 79.2
Sed0002539 Sechium edule HOM05D004197 ORTHO05D004975 9.7e-54 213.4 120 82.5
HanXRQChr10g0286001 Helianthus annuus HOM05D004197 ORTHO05D004975 1.3e-53 213.0 120 82.5
MSTRG.27564 Avicennia marina HOM05D004197 ORTHO05D004975 2.8e-53 211.8 120 81.7
Oeu016610.1 Olea europaea HOM05D004197 ORTHO05D004975 3.7e-53 211.5 120 80.0
PSO017G5565 Papaver somniferum HOM05D004197 ORTHO05D004975 3.7e-53 211.5 119 79.8
PSO675G0737 Papaver somniferum HOM05D004197 ORTHO05D004975 3.7e-53 211.5 119 79.8
Potri.013G126200 Populus trichocarpa HOM05D004197 ORTHO05D004975 3.7e-53 211.5 120 80.0
Zm00001eb400580 Zea mays HOM05D004197 ORTHO05D004975 3.7e-53 211.5 120 80.0
CsaV3_4G002820 Cucumis sativus L. HOM05D004197 ORTHO05D004975 4.8e-53 211.1 120 81.7
ECA240G1468 Erigeron canadensis HOM05D004197 ORTHO05D004975 6.3e-53 210.7 120 80.8
QL04p073242 Quercus lobata HOM05D004197 ORTHO05D004975 8.2e-53 210.3 119 79.0
Sp2g07880 Schrenkiella parvula HOM05D004197 ORTHO05D004975 8.2e-53 210.3 120 82.5
Cc03_g14030 Coffea canephora HOM05D004197 ORTHO05D004975 1.4e-52 209.5 120 82.5
SalBow6G6028 Salvia bowleyana HOM05D004197 ORTHO05D004975 1.8e-52 209.1 118 81.4
TAR362G0244 Trochodendron aralioides HOM05D000090 ORTHO05D001584 1.8e-52 209.1 111 85.6
MELO3C017759.2 Cucumis melo HOM05D004197 ORTHO05D004975 2.4e-52 208.8 120 80.8
Migut.F01587 Erythranthe guttata HOM05D004197 ORTHO05D004975 3.1e-52 208.4 120 80.0
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 4.1e-52 208.0 110 85.5
ECA247G1539 Erigeron canadensis HOM05D004197 ORTHO05D004975 4.1e-52 208.0 120 81.7
MD08G1230600 Malus domestica HOM05D004197 ORTHO05D004975 6.9e-52 207.2 117 79.5
PSO591G0183 Papaver somniferum HOM05D004197 ORTHO05D004975 6.9e-52 207.2 119 78.2
CANSAT80G2644 Cannabis sativa HOM05D004197 ORTHO05D004975 2.0e-51 205.7 120 77.5
TAR629G0957 Trochodendron aralioides HOM05D004197 ORTHO05D004975 3.4e-51 204.9 110 85.5
Lsat_1_v5_gn_5_190681 Lactuca sativa HOM05D004197 ORTHO05D004975 4.5e-51 204.5 120 79.2
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 7.7e-51 203.8 110 82.7
Peaxi162Scf00196g00222 Petunia axillaris HOM05D004197 ORTHO05D004975 7.7e-51 203.8 120 77.5
Nitab4.5_0007872g0010 Nicotiana tabacum HOM05D004197 ORTHO05D004975 1.7e-50 202.6 120 77.5
CAN.G525.23 Capsicum annuum HOM05D004197 ORTHO05D004975 2.2e-50 202.2 120 77.5
Nitab4.5_0000902g0310 Nicotiana tabacum HOM05D004197 ORTHO05D004975 8.5e-50 200.3 120 76.7
unitig_899.g14470 Utricularia gibba HOM05D004197 ORTHO05D004975 1.9e-49 199.1 120 75.8
Solyc04g014390.3 Solanum lycopersicum HOM05D004197 ORTHO05D004975 9.4e-49 196.8 120 75.0
Sopen04g006520 Solanum pennellii HOM05D004197 ORTHO05D004975 9.4e-49 196.8 120 75.0
PGSC0003DMG401023624 Solanum tuberosum HOM05D004197 ORTHO05D004975 1.4e-47 193.0 120 74.2
Atru.chr12.1301 Acer truncatum HOM05D004197 ORTHO05D004975 5.1e-47 191.0 91 98.9
FAN24G1973 Fragaria x ananassa HOM05D004197 ORTHO05D004975 6.7e-47 190.7 110 80.9
QL04p093649 Quercus lobata HOM05D004197 ORTHO05D004975 6.7e-47 190.7 111 77.5
Atru.chr12.1273 Acer truncatum HOM05D004197 ORTHO05D004975 1.5e-46 189.5 93 96.8
FvH4_2g13530 Fragaria vesca HOM05D004197 ORTHO05D004975 1.5e-46 189.5 112 80.4
Gorai.004G083000 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.2e-45 185.7 95 90.5
SGA_v2.0_scaffold49G18240 Striga asiatica HOM05D004197 ORTHO05D004975 6.3e-45 184.1 110 79.1
TAR493G0004 Trochodendron aralioides HOM05D004197 ORTHO05D004975 8.2e-45 183.7 107 81.3
arahy.Tifrunner.gnm1.ann1.XY21PC Arachis hypogaea HOM05D004197 ORTHO05D004975 1.4e-44 183.0 131 67.9
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 1.8e-44 182.6 95 86.3
AUR62002389 Chenopodium quinoa HOM05D004197 ORTHO05D004975 9.1e-44 180.3 213 46.9
Gohir.D08G078000 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.0e-42 176.8 93 88.2
Gohir.D10G075200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.3e-42 176.4 91 89.0
Gohir.D02G135200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 8.5e-42 173.7 91 87.9
Gorai.011G081000 Gossypium raimondii HOM05D004197 ORTHO05D004975 4.2e-41 171.4 91 87.9
Lj3g0000340 Lotus japonicus HOM05D004197 ORTHO05D004975 4.2e-41 171.4 124 68.5
Mapoly0027s0066 Marchantia polymorpha HOM05D004197 ORTHO05D004975 4.2e-41 171.4 120 65.8
SEGI_18755 Sequoiadendron giganteum HOM05D004197 ORTHO05D004975 4.2e-41 171.4 120 65.0
Gorai.005G151300 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.2e-40 169.9 91 85.7
C04p24770 Brassica napus HOM05D004197 ORTHO05D004975 6.1e-40 167.5 110 75.5
BolC4t23981H Brassica oleracea HOM05D004197 ORTHO05D004975 6.1e-40 167.5 110 75.5
SHI24203 Sapria himalayana HOM05D004197 ORTHO05D004975 3.9e-39 164.9 133 59.4
BcaC02g10824 Brassica carinata HOM05D004197 ORTHO05D004975 5.1e-39 164.5 110 74.5
Rhsim02G0084000 Rhododendron simsii HOM05D004197 ORTHO05D004975 8.8e-39 163.7 86 83.7
arahy.Tifrunner.gnm1.ann1.60591L Arachis hypogaea HOM05D004197 ORTHO05D004975 5.7e-38 161.0 136 63.2
HanXRQChr09g0264591 Helianthus annuus HOM05D004197 ORTHO05D004975 5.7e-38 161.0 94 79.8
Sabra13G0105500 Salix brachista HOM05D004197 ORTHO05D004975 2.2e-37 159.1 169 51.5
Zm00001eb007240 Zea mays HOM05D004197 ORTHO05D004975 1.1e-36 156.8 91 76.9
Pp3c1_20100 Physcomitrium patens HOM05D004197 ORTHO05D004975 3.1e-36 155.2 120 58.3
TPR.G31074 Trifolium pratense HOM05D004197 ORTHO05D006502 1.3e-34 149.8 94 73.4
DCAR_029674 Daucus carota HOM05D004197 ORTHO05D004975 2.2e-34 149.1 91 74.7
Gohir.D08G220700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 8.5e-34 147.1 77 88.3
CARHR099320 Cardamine hirsuta HOM05D004197 ORTHO05D004975 1.1e-33 146.7 85 77.6
DCAR_009572 Daucus carota HOM05D004197 ORTHO05D004975 1.1e-33 146.7 91 73.6
Peaxi162Scf00474g00723 Petunia axillaris HOM05D004197 ORTHO05D004975 2.5e-33 145.6 120 60.0
SalBow2G3321 Salvia bowleyana HOM05D004197 ORTHO05D004975 2.5e-33 145.6 89 76.4
unitig_736.g22525 Utricularia gibba HOM05D000398 ORTHO05D000551 1.6e-32 142.9 86 73.3
Hma1.2p1_0150F.1_g066800 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 2.4e-28 129.0 62 93.5
COL.COLO4_08144 Corchorus olitorius HOM05D004197 ORTHO05D004975 7.0e-28 127.5 62 93.5
Lsat_1_v5_gn_6_23540 Lactuca sativa HOM05D004197 ORTHO05D004975 7.0e-28 127.5 95 65.3
arahy.Tifrunner.gnm1.ann1.GGUP18 Arachis hypogaea HOM05D004197 ORTHO05D004975 1.6e-27 126.3 62 91.9
SMO347G0376 Selaginella moellendorffii HOM05D004197 ORTHO05D004975 1.6e-27 126.3 118 48.3
vmacro16589 Vaccinium macrocarpon HOM05D004197 ORTHO05D004975 7.7e-27 124.0 62 88.7
Glyma.07G044001 Glycine max HOM05D004197 ORTHO05D004975 1.7e-26 122.9 91 69.2
Gorai.004G076200 Gossypium raimondii HOM05D004197 ORTHO05D004975 8.5e-26 120.6 120 53.3
Cre06.g270650 Chlamydomonas reinhardtii HOM05D004197 ORTHO05D004975 3.3e-22 108.6 110 46.4
arahy.Tifrunner.gnm1.ann1.HJ8Q1I Arachis hypogaea HOM05D004197 ORTHO05D004975 1.8e-20 102.8 57 80.7
Lsat_1_v5_gn_2_131080 Lactuca sativa HOM05D004197 ORTHO05D004975 3.5e-19 98.6 82 62.2
Gohir.D04G172540 Gossypium hirsutum HOM05D004197 ORTHO05D004975 5.9e-19 97.8 62 72.6
MCO09G643 Micromonas commoda HOM05D004197 ORTHO05D004975 1.7e-18 96.3 115 40.9
Gorai.012G161800 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.9e-18 95.5 62 71.0
Gorai.004G234500 Gossypium raimondii HOM05D004197 ORTHO05D004975 9.4e-17 90.5 57 73.7
Actinidia27110 Actinidia chinensis HOM05D004197 ORTHO05D004975 3.7e-13 78.6 44 81.8
Thecc.10G088100 Theobroma cacao HOM05D004197 ORTHO05D004975 4.0e-07 58.5 35 74.3


User provided reference genes

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