Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 1.0e-84 316.6 153 100.0
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 8.3e-18 94.4 157 45.2
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 4.1e-17 92.0 137 44.5
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 9.2e-17 90.9 157 43.3
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 2.1e-16 89.7 155 41.9
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 2.7e-16 89.4 146 47.9
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.6e-16 88.6 155 43.2
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 1.0e-15 87.4 163 41.7
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 3.0e-15 85.9 139 44.6
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 1.2e-13 80.5 134 41.0
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 2.1e-13 79.7 140 40.0
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 2.1e-13 79.7 146 37.0
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 2.8e-13 79.3 152 41.4
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.8e-13 79.3 143 43.4
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 6.2e-13 78.2 138 41.3
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 1.4e-12 77.0 138 40.6
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.3e-12 76.3 145 42.1
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 3.1e-12 75.9 145 38.6
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 4.0e-12 75.5 150 35.3
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 5.2e-12 75.1 153 36.6
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 8.9e-12 74.3 127 41.7
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 1.2e-11 73.9 127 42.5
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 2.0e-11 73.2 162 37.7
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 2.0e-11 73.2 140 42.9
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 5.8e-11 71.6 138 37.7
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 5.8e-11 71.6 146 38.4
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 9.9e-11 70.9 139 36.0
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.3e-10 70.5 126 39.7
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 1.7e-10 70.1 124 41.1
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 3.8e-10 68.9 131 38.2
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 6.4e-10 68.2 137 38.0
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 8.4e-10 67.8 157 35.7
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 8.4e-10 67.8 139 37.4
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 1.1e-09 67.4 137 40.9
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.4e-09 67.0 103 45.6
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.4e-09 67.0 148 38.5
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 1.4e-09 67.0 141 39.0
BcaC08g44803 Brassica carinata HOM05D002974 ORTHO05D002992 1.9e-09 66.6 143 37.8
BolC6t37544H Brassica oleracea HOM05D002974 ORTHO05D002992 1.9e-09 66.6 143 37.8
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 1.9e-09 66.6 104 44.2
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.9e-09 66.6 104 44.2
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 1.9e-09 66.6 136 38.2
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 2.4e-09 66.2 133 38.3
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 2.4e-09 66.2 143 37.8
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 2.4e-09 66.2 147 31.3
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 2.4e-09 66.2 128 43.0
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.2e-09 65.9 103 44.7
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 3.2e-09 65.9 65 60.0
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 3.2e-09 65.9 123 37.4
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 4.1e-09 65.5 59 59.3
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.4e-09 65.1 103 44.7
SGA_v2.0_scaffold232G43495 Striga asiatica HOM05D002974 ORTHO05D002992 5.4e-09 65.1 133 38.3
Dinv06180 Davidia involucrata HOM05D002974 ORTHO05D002992 7.1e-09 64.7 129 36.4
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 7.1e-09 64.7 103 42.7
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 9.2e-09 64.3 158 34.8
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 1.2e-08 63.9 41 78.0
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.6e-08 63.5 130 36.9
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 1.6e-08 63.5 151 35.8
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.6e-08 63.5 140 37.1
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 1.6e-08 63.5 145 34.5
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.6e-08 63.5 41 78.0
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 2.1e-08 63.2 157 36.9
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.1e-08 63.2 148 37.8
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.1e-08 63.2 148 37.2
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 2.7e-08 62.8 133 36.8
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 2.7e-08 62.8 131 35.9
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 2.7e-08 62.8 52 61.5
SGA_v2.0_scaffold43G16289 Striga asiatica HOM05D002974 ORTHO05D002992 2.7e-08 62.8 143 33.6
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 2.7e-08 62.8 41 75.6
Aa31LG10G11550 Aethionema arabicum HOM05D002974 ORTHO05D002992 3.5e-08 62.4 143 35.0
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 3.5e-08 62.4 139 35.3
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 3.5e-08 62.4 152 33.6
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 3.5e-08 62.4 43 69.8
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 3.5e-08 62.4 43 69.8
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 3.5e-08 62.4 154 33.1
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 4.6e-08 62.0 153 34.0
Oeu011571.1 Olea europaea HOM05D002974 ORTHO05D002992 4.6e-08 62.0 149 36.2
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 4.6e-08 62.0 133 38.3
SalBow6G5116 Salvia bowleyana HOM05D002974 ORTHO05D002992 4.6e-08 62.0 120 40.8
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 6.0e-08 61.6 40 80.0
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 6.0e-08 61.6 137 35.0
Eucgr.G03218 Eucalyptus grandis HOM05D002974 ORTHO05D002992 6.0e-08 61.6 156 35.3
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 6.0e-08 61.6 154 33.8
BcaB02g07639 Brassica carinata HOM05D002974 ORTHO05D002992 7.8e-08 61.2 130 34.6
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 1.0e-07 60.8 144 35.4
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 1.3e-07 60.5 138 33.3
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.3e-07 60.5 117 36.8
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 1.3e-07 60.5 73 46.6
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 1.7e-07 60.1 127 36.2
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 1.7e-07 60.1 58 58.6
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 1.7e-07 60.1 128 33.6
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 2.3e-07 59.7 54 61.1
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 3.0e-07 59.3 111 38.7
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 3.0e-07 59.3 64 51.6
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 3.9e-07 58.9 42 66.7
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 3.9e-07 58.9 56 60.7
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 3.9e-07 58.9 110 39.1
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 3.9e-07 58.9 160 31.9
THA.LOC104803260 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 3.9e-07 58.9 151 35.1
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 3.9e-07 58.9 42 71.4
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 5.1e-07 58.5 149 36.2
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 5.1e-07 58.5 145 36.6
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 5.1e-07 58.5 137 34.3
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 5.1e-07 58.5 54 59.3
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 5.1e-07 58.5 46 67.4
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 5.1e-07 58.5 147 32.0
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 6.6e-07 58.2 146 35.6
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 6.6e-07 58.2 146 35.6
CARHR136270 Cardamine hirsuta HOM05D002974 ORTHO05D002992 6.6e-07 58.2 73 43.8
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 6.6e-07 58.2 48 66.7
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 6.6e-07 58.2 51 60.8
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 6.6e-07 58.2 43 67.4
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 6.6e-07 58.2 134 35.1
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 6.6e-07 58.2 153 32.7
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 8.6e-07 57.8 42 69.0
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 8.6e-07 57.8 36 75.0
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 1.1e-06 57.4 142 35.2
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 1.5e-06 57.0 42 69.0
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.5e-06 57.0 54 61.1
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 1.5e-06 57.0 35 80.0
Glyma.04G134200 Glycine max HOM05D002974 ORTHO05D002992 1.5e-06 57.0 39 76.9
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 1.5e-06 57.0 52 59.6
Lalb_Chr21g0315251 Lupinus albus HOM05D002974 ORTHO05D002992 1.5e-06 57.0 51 62.7
Phvul.005G024800 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 1.5e-06 57.0 41 73.2
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.5e-06 57.0 109 38.5
C03p27500 Brassica napus HOM05D002974 ORTHO05D002992 1.9e-06 56.6 67 47.8
BolC3t15126H Brassica oleracea HOM05D002974 ORTHO05D002992 1.9e-06 56.6 67 47.8
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.9e-06 56.6 116 36.2
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 1.9e-06 56.6 47 63.8
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 1.9e-06 56.6 65 53.8
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 1.9e-06 56.6 42 69.0
VMungo1080G0254 Vigna mungo HOM05D002974 ORTHO05D002992 1.9e-06 56.6 41 75.6
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 2.5e-06 56.2 48 64.6
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 2.5e-06 56.2 108 43.5
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.5e-06 56.2 127 36.2
Sed0000723 Sechium edule HOM05D002974 ORTHO05D002992 2.5e-06 56.2 47 66.0
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 2.5e-06 56.2 54 57.4
BcaB01g03488 Brassica carinata HOM05D002974 ORTHO05D002992 3.3e-06 55.8 67 50.7
BcaC07g39979 Brassica carinata HOM05D002974 ORTHO05D002992 3.3e-06 55.8 42 69.0
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 3.3e-06 55.8 54 59.3
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 3.3e-06 55.8 123 33.3
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 4.3e-06 55.5 125 35.2
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 4.3e-06 55.5 43 65.1
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 4.3e-06 55.5 52 55.8
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 5.6e-06 55.1 34 76.5
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 5.6e-06 55.1 125 35.2
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 5.6e-06 55.1 132 34.1
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 5.6e-06 55.1 134 34.3
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 5.6e-06 55.1 134 34.3
Glyma.15G232200 Glycine max HOM05D002974 ORTHO05D002992 5.6e-06 55.1 98 38.8
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 5.6e-06 55.1 139 32.4
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 5.6e-06 55.1 54 61.1
QL04p017793 Quercus lobata HOM05D002974 ORTHO05D002992 5.6e-06 55.1 35 77.1
Rhsim04G0111200 Rhododendron simsii HOM05D002974 ORTHO05D002992 5.6e-06 55.1 113 40.7
Rhsim04G0112500 Rhododendron simsii HOM05D002974 ORTHO05D002992 5.6e-06 55.1 113 40.7
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 5.6e-06 55.1 52 61.5
TPR.G22516 Trifolium pratense HOM05D002974 ORTHO05D002992 5.6e-06 55.1 36 75.0
Psat4g145360 Pisum sativum HOM05D002974 ORTHO05D002992 7.3e-06 54.7 36 75.0
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 9.6e-06 54.3 127 35.4
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 9.6e-06 54.3 49 61.2
Medtr8g040080 Medicago truncatula HOM05D002974 ORTHO05D002992 9.6e-06 54.3 43 62.8
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 9.6e-06 54.3 69 49.3
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 9.6e-06 54.3 38 65.8
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 9.6e-06 54.3 57 50.9


User provided reference genes

Program Settings