Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1251 Acer truncatum HOM05D000130 ORTHO05D019427 2.4e-26 121.3 58 100.0
Atru.chr12.1253 Acer truncatum HOM05D000130 ORTHO05D005673 1.2e-25 119.0 58 96.6
Sabra01G0023100 Salix brachista HOM05D000130 ORTHO05D005673 1.5e-20 102.1 58 79.3
TWI63G0943 Tripterygium wilfordii HOM05D000130 ORTHO05D005673 4.4e-20 100.5 58 77.6
Potri.001G032400 Populus trichocarpa HOM05D000130 ORTHO05D005673 5.8e-20 100.1 58 77.6
Prupe.2G045000 Prunus persica HOM05D000130 ORTHO05D005673 7.5e-20 99.8 58 77.6
QL04p021627 Quercus lobata HOM05D000130 ORTHO05D005673 9.8e-20 99.4 57 78.9
QL93p0137_0010 Quercus lobata HOM05D000130 ORTHO05D005673 9.8e-20 99.4 57 78.9
Cfa010963 Carpinus fangiana HOM05D000130 ORTHO05D005673 1.3e-19 99.0 58 81.0
Ciclev10001722m.g Citrus clementina HOM05D000130 ORTHO05D005673 1.7e-19 98.6 58 75.9
Haze_02974 Corylus avellana HOM05D000130 ORTHO05D005673 2.2e-19 98.2 58 81.0
Potri.003G192600 Populus trichocarpa HOM05D000130 ORTHO05D005673 3.7e-19 97.4 58 74.1
Potri.003G192650 Populus trichocarpa HOM05D000130 ORTHO05D005673 3.7e-19 97.4 58 74.1
Thecc.10G140100 Theobroma cacao HOM05D000130 ORTHO05D005673 1.4e-18 95.5 58 74.1
MD07G1043400 Malus domestica HOM05D000130 ORTHO05D005673 3.2e-18 94.4 58 72.4
QL04p021605 Quercus lobata HOM05D000130 ORTHO05D005673 3.2e-18 94.4 57 73.7
Duzib114G0468 Durio zibethinus HOM05D000130 ORTHO05D005673 7.0e-18 93.2 58 74.1
Sabra03G0143500 Salix brachista HOM05D000130 ORTHO05D005673 9.2e-18 92.8 58 70.7
COL.COLO4_38386 Corchorus olitorius HOM05D000130 ORTHO05D005673 2.0e-17 91.7 58 70.7
Oeu014624.1 Olea europaea HOM05D000130 ORTHO05D005673 2.0e-17 91.7 58 70.7
FvH4_7g04040 Fragaria vesca HOM05D000130 ORTHO05D005673 3.5e-17 90.9 58 69.0
FAN06G2918 Fragaria x ananassa HOM05D000130 ORTHO05D005673 3.5e-17 90.9 58 69.0
Manes.11G008300 Manihot esculenta HOM05D000130 ORTHO05D005673 3.5e-17 90.9 58 70.7
Dinv02682 Davidia involucrata HOM05D000130 ORTHO05D005673 4.6e-17 90.5 58 70.7
PGR031G0016 Punica granatum HOM05D000130 ORTHO05D005673 4.6e-17 90.5 58 72.4
Lj9A633T57 Lonicera japonica HOM05D000130 ORTHO05D005673 7.8e-17 89.7 58 69.0
MD02G1276600 Malus domestica HOM05D000130 ORTHO05D005673 1.0e-16 89.4 58 67.2
Nn001s41350 Nelumbo nucifera HOM05D000130 ORTHO05D005673 1.0e-16 89.4 58 70.7
Cpa.g.sc3370.1 Carica papaya HOM05D000130 ORTHO05D005673 1.3e-16 89.0 58 69.0
RcHm_v2.0_Chr1g0327901 Rosa chinensis HOM05D000130 ORTHO05D005673 1.3e-16 89.0 58 69.0
Hma1.2p1_0233F.1_g098340 Hydrangea macrophylla HOM05D000130 ORTHO05D005673 3.0e-16 87.8 58 67.2
Hma1.2p1_1342F.1_g277010 Hydrangea macrophylla HOM05D000130 ORTHO05D005673 3.0e-16 87.8 58 67.2
Gohir.D06G184200 Gossypium hirsutum HOM05D000130 ORTHO05D005673 3.9e-16 87.4 58 72.4
Gorai.010G215600 Gossypium raimondii HOM05D000130 ORTHO05D005673 3.9e-16 87.4 58 72.4
RcHm_v2.0_Chr1g0327881 Rosa chinensis HOM05D000130 ORTHO05D005673 3.9e-16 87.4 58 65.5
Duzib106G1506 Durio zibethinus HOM05D000130 ORTHO05D005673 5.0e-16 87.0 62 67.7
TAR633G0891 Trochodendron aralioides HOM05D000130 ORTHO05D005673 5.0e-16 87.0 58 69.0
vmacro13775 Vaccinium macrocarpon HOM05D000130 ORTHO05D005673 5.0e-16 87.0 58 65.5
CSS0031361 Camellia sinensis var. sinensis HOM05D000130 ORTHO05D005673 8.6e-16 86.3 58 69.0
Gohir.A06G174100 Gossypium hirsutum HOM05D000130 ORTHO05D005673 1.1e-15 85.9 57 71.9
FvH4_7g04070 Fragaria vesca HOM05D000130 ORTHO05D005673 1.5e-15 85.5 58 65.5
FAN03G1948 Fragaria x ananassa HOM05D000130 ORTHO05D005673 1.5e-15 85.5 58 65.5
FAN06G2035 Fragaria x ananassa HOM05D000130 ORTHO05D005673 1.5e-15 85.5 58 65.5
Glyma.06G310100 Glycine max HOM05D000130 ORTHO05D005673 1.5e-15 85.5 58 67.2
Prupe.2G044700 Prunus persica HOM05D000130 ORTHO05D005673 1.5e-15 85.5 58 65.5
FAN01G2579 Fragaria x ananassa HOM05D000130 ORTHO05D005673 3.3e-15 84.3 58 65.5
Lsat_1_v5_gn_4_31120 Lactuca sativa HOM05D000130 ORTHO05D005673 3.3e-15 84.3 58 65.5
Rhsim07G0071400 Rhododendron simsii HOM05D000130 ORTHO05D005673 3.3e-15 84.3 58 67.2
Rhsim07G0071500 Rhododendron simsii HOM05D000130 ORTHO05D005673 3.3e-15 84.3 58 67.2
PGSC0003DMG400021128 Solanum tuberosum HOM05D000130 ORTHO05D005673 4.3e-15 84.0 58 65.5
HanXRQChr09g0252101 Helianthus annuus HOM05D000130 ORTHO05D005673 9.5e-15 82.8 58 62.1
Lsat_1_v5_gn_4_31761 Lactuca sativa HOM05D000130 ORTHO05D005673 9.5e-15 82.8 58 65.5
VMungo1080G1129 Vigna mungo HOM05D000130 ORTHO05D005673 9.5e-15 82.8 58 62.1
CiPaw.13G016600 Carya illinoinensis HOM05D000130 ORTHO05D005673 1.2e-14 82.4 58 65.5
MD02G1275900 Malus domestica HOM05D000130 ORTHO05D005673 1.2e-14 82.4 58 67.2
MD02G1276300 Malus domestica HOM05D000130 ORTHO05D005673 1.2e-14 82.4 54 70.4
Nn1g07739 Nelumbo nucifera HOM05D000130 ORTHO05D005673 1.2e-14 82.4 58 60.3
CsaV3_6G035820 Cucumis sativus L. HOM05D000130 ORTHO05D005673 2.1e-14 81.6 58 63.8
Glyma.13G189800 Glycine max HOM05D000130 ORTHO05D005673 2.1e-14 81.6 58 65.5
MBI19_g02321_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D005673 2.1e-14 81.6 57 64.9
SalBow5G1300 Salvia bowleyana HOM05D000130 ORTHO05D005673 2.1e-14 81.6 57 63.2
Solyc02g069800.1 Solanum lycopersicum HOM05D000130 ORTHO05D005673 2.1e-14 81.6 58 63.8
TWI74G0963 Tripterygium wilfordii HOM05D000130 ORTHO05D005673 2.1e-14 81.6 58 65.5
Cc07_g16100 Coffea canephora HOM05D000130 ORTHO05D005673 2.8e-14 81.3 58 65.5
DCAR_006409 Daucus carota HOM05D000130 ORTHO05D005673 2.8e-14 81.3 58 63.8
Prupe.2G045300 Prunus persica HOM05D000130 ORTHO05D005673 2.8e-14 81.3 58 65.5
ClCG08G010720 Citrullus lanatus HOM05D000130 ORTHO05D005673 3.6e-14 80.9 58 62.1
Haze_10874 Corylus avellana HOM05D003938 ORTHO05D004759 3.6e-14 80.9 43 86.0
HanXRQChr16g0525291 Helianthus annuus HOM05D000130 ORTHO05D005673 3.6e-14 80.9 58 60.3
Medtr3g012440 Medicago truncatula HOM05D000130 ORTHO05D005673 3.6e-14 80.9 58 63.8
Sed0009529 Sechium edule HOM05D000130 ORTHO05D005673 3.6e-14 80.9 58 62.1
Lj3g0007425 Lotus japonicus HOM05D000130 ORTHO05D005673 6.2e-14 80.1 58 63.8
MBI13_g05464_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D005673 6.2e-14 80.1 58 67.2
Sopen02g018960 Solanum pennellii HOM05D000130 ORTHO05D005673 6.2e-14 80.1 58 62.1
VMungo1127G0236 Vigna mungo HOM05D000130 ORTHO05D005673 6.2e-14 80.1 58 60.3
DCAR_006410 Daucus carota HOM05D000130 ORTHO05D005673 8.1e-14 79.7 58 62.1
CANSAT56G0968 Cannabis sativa HOM05D000130 ORTHO05D005673 1.1e-13 79.3 58 60.3
Lj3g0015864 Lotus japonicus HOM05D000130 ORTHO05D005673 1.1e-13 79.3 58 63.8
MD02G1275600 Malus domestica HOM05D000130 ORTHO05D019427 1.1e-13 79.3 57 64.9
GSVIVG01025780001 Vitis vinifera HOM05D000130 ORTHO05D005673 1.1e-13 79.3 58 65.5
Nitab4.5_0009058g0010 Nicotiana tabacum HOM05D000130 ORTHO05D005673 1.4e-13 79.0 58 58.6
TPR.G27660 Trifolium pratense HOM05D000130 ORTHO05D019427 1.4e-13 79.0 58 58.6
GSVIVG01036591001 Vitis vinifera HOM05D000130 ORTHO05D005673 1.4e-13 79.0 57 61.4
CAN.G954.27 Capsicum annuum HOM05D000130 ORTHO05D005673 1.8e-13 78.6 58 62.1
MELO3C011389.2 Cucumis melo HOM05D000130 ORTHO05D005673 1.8e-13 78.6 58 62.1
MBI13_g20756_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D005673 3.1e-13 77.8 58 58.6
Lalb_Chr01g0007461 Lupinus albus HOM05D000130 ORTHO05D005673 4.0e-13 77.4 58 56.9
MBI13_g15088_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D005673 4.0e-13 77.4 58 65.5
Phvul.011G197000 Phaseolus vulgaris HOM05D000130 ORTHO05D005673 4.0e-13 77.4 58 58.6
Dinv20746 Davidia involucrata HOM05D000130 ORTHO05D005673 5.2e-13 77.0 58 58.6
Nitab4.5_0010392g0010 Nicotiana tabacum HOM05D000130 ORTHO05D005673 5.2e-13 77.0 58 53.4
DCAR_006408 Daucus carota HOM05D000130 ORTHO05D005673 6.8e-13 76.6 58 60.3
MBI19_g02323_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D005673 6.8e-13 76.6 57 63.2
RcHm_v2.0_Chr1g0327821 Rosa chinensis HOM05D000130 ORTHO05D005673 6.8e-13 76.6 55 63.6
Actinidia06212 Actinidia chinensis HOM05D000130 ORTHO05D005673 1.2e-12 75.9 68 58.8
Migut.B01179 Erythranthe guttata HOM05D000130 ORTHO05D005673 1.2e-12 75.9 54 63.0
Phvul.005G016400 Phaseolus vulgaris HOM05D000130 ORTHO05D005673 1.2e-12 75.9 58 58.6
Lsat_1_v5_gn_1_64940 Lactuca sativa HOM05D000130 ORTHO05D005673 1.5e-12 75.5 58 56.9
TPR.G9965 Trifolium pratense HOM05D000130 ORTHO05D005673 1.5e-12 75.5 58 56.9
SalBow5G0800 Salvia bowleyana HOM05D000130 ORTHO05D005673 2.0e-12 75.1 58 60.3
TPR.G8795 Trifolium pratense HOM05D000130 ORTHO05D019427 2.6e-12 74.7 58 56.9
MSTRG.20496 Avicennia marina HOM05D000130 ORTHO05D005673 3.4e-12 74.3 58 58.6
Nitab4.5_0002719g0120 Nicotiana tabacum HOM05D000130 ORTHO05D005673 3.4e-12 74.3 59 55.9
Sc11g0006240 Simmondsia chinensis HOM05D000130 ORTHO05D005673 5.8e-12 73.6 58 56.9
EL10Ac2g02731 Beta vulgaris HOM05D000130 ORTHO05D005673 7.5e-12 73.2 58 56.9
QL02p088669 Quercus lobata HOM05D000130 ORTHO05D005673 7.5e-12 73.2 57 54.4
Aqoxy7G01817 Aquilegia oxysepala HOM05D000130 ORTHO05D005673 9.8e-12 72.8 58 56.9
Peaxi162Scf01312g00048 Petunia axillaris HOM05D000130 ORTHO05D005673 9.8e-12 72.8 58 56.9
GSVIVG01025797001 Vitis vinifera HOM05D000130 ORTHO05D005673 9.8e-12 72.8 54 57.4
Zm00001eb349490 Zea mays HOM05D000130 ORTHO05D005673 9.8e-12 72.8 58 58.6
Psat5g223920 Pisum sativum HOM05D000130 ORTHO05D005673 1.3e-11 72.4 58 53.4
CDE08G1041 Ceratophyllum demersum HOM05D000130 ORTHO05D005673 1.7e-11 72.0 57 57.9
Ca_14205_v3 Cicer arietinum L. HOM05D000130 ORTHO05D005673 1.7e-11 72.0 58 55.2
Nitab4.5_0001236g0010 Nicotiana tabacum HOM05D000130 ORTHO05D005673 1.7e-11 72.0 58 51.7
Sabra16G0034900 Salix brachista HOM05D000130 ORTHO05D005673 2.2e-11 71.6 58 55.2
Ah.12g064820 Amaranthus hybridus HOM05D000130 ORTHO05D005673 2.9e-11 71.2 58 58.6
CiPaw.10G043300 Carya illinoinensis HOM05D000130 ORTHO05D005673 2.9e-11 71.2 58 51.7
AUR62032575 Chenopodium quinoa HOM05D000130 ORTHO05D005673 2.9e-11 71.2 58 58.6
AUR62031693 Chenopodium quinoa HOM05D000130 ORTHO05D005673 3.7e-11 70.9 58 58.6
Dinv36117 Davidia involucrata HOM05D000130 ORTHO05D005673 3.7e-11 70.9 58 55.2
ECA234G3523 Erigeron canadensis HOM05D000130 ORTHO05D005673 3.7e-11 70.9 58 53.4
Os05g0410200 Oryza sativa ssp. japonica HOM05D000130 ORTHO05D005673 4.9e-11 70.5 58 51.7
MBI16_g16461_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D019427 8.3e-11 69.7 58 53.4
CSS0011929 Camellia sinensis var. sinensis HOM05D000130 ORTHO05D005673 2.4e-10 68.2 56 58.9
RcHm_v2.0_Chr1g0327851 Rosa chinensis HOM05D000130 ORTHO05D005673 3.2e-10 67.8 58 53.4
TAR623G0855 Trochodendron aralioides HOM05D000130 ORTHO05D005673 3.2e-10 67.8 58 55.2
Zm00001eb287940 Zea mays HOM05D000130 ORTHO05D005673 3.2e-10 67.8 58 55.2
Sabra16G0034800 Salix brachista HOM05D000130 ORTHO05D005673 4.1e-10 67.4 58 50.0
Lj2P411T16 Lonicera japonica HOM05D000130 ORTHO05D005673 5.4e-10 67.0 58 51.7
Potri.016G031500 Populus trichocarpa HOM05D000130 ORTHO05D005673 5.4e-10 67.0 56 51.8
RcHm_v2.0_Chr1g0327831 Rosa chinensis HOM05D000130 ORTHO05D019427 5.4e-10 67.0 58 50.0
MBI16_g16464_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D005673 7.1e-10 66.6 54 53.7
ATR0307G019 Amborella trichopoda HOM05D000130 ORTHO05D005673 2.7e-09 64.7 58 44.8
PSO063G7155 Papaver somniferum HOM05D000130 ORTHO05D005673 6.0e-09 63.5 58 48.3
Nitab4.5_0004596g0010 Nicotiana tabacum HOM05D000130 ORTHO05D005673 1.3e-08 62.4 38 68.4
PSO017G2837 Papaver somniferum HOM05D000130 ORTHO05D005673 1.3e-08 62.4 58 46.6
SGA_v2.0_scaffold96G29077 Striga asiatica HOM05D000130 ORTHO05D005673 2.3e-08 61.6 58 48.3
FvH4_7g04030 Fragaria vesca HOM05D000721 ORTHO05D005673 3.9e-08 60.8 54 50.0
FAN06G1401 Fragaria x ananassa HOM05D000130 ORTHO05D005673 3.9e-08 60.8 54 50.0
Dinv31999 Davidia involucrata HOM05D000130 ORTHO05D005673 5.1e-08 60.5 33 78.8
SEGI_39324 Sequoiadendron giganteum HOM05D000130 ORTHO05D005673 5.1e-08 60.5 56 42.9
Atru.chr1.1305 Acer truncatum HOM05D000130 ORTHO05D005673 8.6e-08 59.7 58 51.7
Lj1P1083T22 Lonicera japonica HOM05D000130 ORTHO05D005673 1.1e-07 59.3 58 46.6


User provided reference genes

Program Settings