Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1242 Acer truncatum HOM05D007594 ORTHO05D009607 8.1e-45 183.3 91 100.0
Dinv03295 Davidia involucrata HOM05D007594 ORTHO05D009607 6.5e-26 120.6 83 71.1
Sc11g0006300 Simmondsia chinensis HOM05D007594 ORTHO05D009607 6.5e-26 120.6 90 66.7
GSVIVG01036598001 Vitis vinifera HOM05D007594 ORTHO05D009607 1.4e-25 119.4 90 71.1
Rhsim07G0071100 Rhododendron simsii HOM05D007594 ORTHO05D009607 3.2e-25 118.2 93 65.6
TAR633G1990 Trochodendron aralioides HOM05D007594 ORTHO05D009607 1.6e-24 115.9 90 64.4
Duzib128G1040 Durio zibethinus HOM05D007594 ORTHO05D009607 7.9e-24 113.6 85 64.7
Ciclev10003355m.g Citrus clementina HOM05D007594 ORTHO05D009607 1.3e-23 112.8 80 70.0
MD00G1152500 Malus domestica HOM05D007594 ORTHO05D009607 1.3e-23 112.8 83 65.1
Actinidia06215 Actinidia chinensis HOM05D007594 ORTHO05D009607 1.8e-23 112.5 89 64.0
Hma1.2p1_1342F.1_g276950 Hydrangea macrophylla HOM05D007594 ORTHO05D009607 1.8e-23 112.5 83 66.3
Manes.04G156000 Manihot esculenta HOM05D007594 ORTHO05D009607 2.3e-23 112.1 89 62.9
PSO339G5236 Papaver somniferum HOM05D007594 ORTHO05D009607 2.3e-23 112.1 90 61.1
CSS0016538 Camellia sinensis var. sinensis HOM05D007594 ORTHO05D009607 8.7e-23 110.2 82 69.5
TWI63G1387 Tripterygium wilfordii HOM05D007594 ORTHO05D009607 1.1e-22 109.8 83 62.7
Nn032s41616 Nelumbo nucifera HOM05D007594 ORTHO05D009607 2.5e-22 108.6 90 61.1
Prupe.2G044000 Prunus persica HOM05D007594 ORTHO05D009607 3.3e-22 108.2 81 64.2
Thecc.10G140800 Theobroma cacao HOM05D007594 ORTHO05D009607 3.3e-22 108.2 72 69.4
CiPaw.13G016300 Carya illinoinensis HOM05D007594 ORTHO05D009607 5.7e-22 107.5 83 62.7
Potri.003G193100 Populus trichocarpa HOM05D007594 ORTHO05D009607 1.3e-21 106.3 89 61.8
Phvul.005G018200 Phaseolus vulgaris HOM05D007594 ORTHO05D009607 1.6e-21 105.9 87 62.1
Lj3g0014217 Lotus japonicus HOM05D007594 ORTHO05D009607 2.8e-21 105.1 84 61.9
CsaV3_5G029660 Cucumis sativus L. HOM05D007594 ORTHO05D009607 3.7e-21 104.8 95 57.9
Nitab4.5_0004215g0020 Nicotiana tabacum HOM05D007594 ORTHO05D009607 8.2e-21 103.6 83 63.9
Lj9P657T24 Lonicera japonica HOM05D007594 ORTHO05D009607 1.1e-20 103.2 71 66.2
Gorai.011G220800 Gossypium raimondii HOM05D007594 ORTHO05D009607 1.8e-20 102.4 79 63.3
Lalb_Chr24g0402821 Lupinus albus HOM05D007594 ORTHO05D009607 1.8e-20 102.4 86 58.1
Gohir.D10G197300 Gossypium hirsutum HOM05D007594 ORTHO05D009607 2.4e-20 102.1 79 63.3
ClCG11G013140 Citrullus lanatus HOM05D007594 ORTHO05D009607 4.1e-20 101.3 73 64.4
CANSAT56G2828 Cannabis sativa HOM05D007594 ORTHO05D009607 5.3e-20 100.9 70 70.0
DCAR_006600 Daucus carota HOM05D007594 ORTHO05D009607 5.3e-20 100.9 73 61.6
Nitab4.5_0004358g0020 Nicotiana tabacum HOM05D007594 ORTHO05D009607 5.3e-20 100.9 83 62.7
MBI13_g07373_MAGBIO Magnolia biondii HOM05D007594 ORTHO05D009607 6.9e-20 100.5 90 56.7
Solyc07g048100.3 Solanum lycopersicum HOM05D007594 ORTHO05D009607 6.9e-20 100.5 90 55.6
Gohir.A10G189500 Gossypium hirsutum HOM05D007594 ORTHO05D009607 1.5e-19 99.4 79 63.3
Cc00_g06100 Coffea canephora HOM05D007594 ORTHO05D009607 2.6e-19 98.6 90 56.7
RcHm_v2.0_Chr1g0327541 Rosa chinensis HOM05D007594 ORTHO05D009607 2.6e-19 98.6 70 71.4
Sopen07g024530 Solanum pennellii HOM05D007594 ORTHO05D009607 3.4e-19 98.2 90 54.4
CAN.G897.9 Capsicum annuum HOM05D007594 ORTHO05D009607 5.9e-19 97.4 90 56.7
Glyma.11G170937 Glycine max HOM05D007594 ORTHO05D009607 7.6e-19 97.1 89 57.3
Medtr3g013490 Medicago truncatula HOM05D007594 ORTHO05D009607 7.6e-19 97.1 90 52.2
VMungo1080G0650 Vigna mungo HOM05D007594 ORTHO05D009607 7.6e-19 97.1 87 59.8
Psat5g215360 Pisum sativum HOM05D007594 ORTHO05D009607 1.0e-18 96.7 92 52.2
TPR.G20651 Trifolium pratense HOM05D007594 ORTHO05D009607 1.0e-18 96.7 90 53.3
PGSC0003DMG400006140 Solanum tuberosum HOM05D007594 ORTHO05D009607 1.3e-18 96.3 89 57.3
ATR0307G127 Amborella trichopoda HOM05D007594 ORTHO05D009607 6.5e-18 94.0 86 52.3
arahy.Tifrunner.gnm1.ann1.HR2C9L Arachis hypogaea HOM05D007594 ORTHO05D009607 6.5e-18 94.0 77 61.0
arahy.Tifrunner.gnm1.ann1.IJ2ITM Arachis hypogaea HOM05D007594 ORTHO05D009607 6.5e-18 94.0 77 61.0
Peaxi162Scf02035g00032 Petunia axillaris HOM05D007594 ORTHO05D009607 8.5e-18 93.6 84 58.3
FvH4_7g03921 Fragaria vesca HOM05D007594 ORTHO05D009607 3.2e-17 91.7 70 65.7
FAN06G1277 Fragaria x ananassa HOM05D007594 ORTHO05D009607 3.2e-17 91.7 70 65.7
FAN01G0543 Fragaria x ananassa HOM05D007594 ORTHO05D009607 5.5e-17 90.9 70 67.1
FAN03G3082 Fragaria x ananassa HOM05D000688 ORTHO05D003888 5.5e-17 90.9 70 65.7
Aqoxy1G00415 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 7.2e-17 90.5 71 62.0
HanXRQChr05g0146261 Helianthus annuus HOM05D007594 ORTHO05D009607 3.6e-16 88.2 72 54.2
Hma1.2p1_1730F.1_g299670 Hydrangea macrophylla HOM05D007594 ORTHO05D009607 3.6e-16 88.2 56 73.2
Migut.B01185 Erythranthe guttata HOM05D007594 ORTHO05D009607 4.6e-16 87.8 93 49.5
THA.LOC104826746 Tarenaya hassleriana HOM05D007594 ORTHO05D009607 6.1e-16 87.4 67 64.2
AUR62023865 Chenopodium quinoa HOM05D007594 ORTHO05D009607 7.9e-16 87.0 74 56.8
vmacro13773 Vaccinium macrocarpon HOM05D007594 ORTHO05D009607 1.0e-15 86.7 54 74.1
ECA246G0181 Erigeron canadensis HOM05D007594 ORTHO05D009607 1.4e-15 86.3 72 52.8
Lsat_1_v5_gn_1_118241 Lactuca sativa HOM05D007594 ORTHO05D009607 1.8e-15 85.9 80 48.8
Eucgr.G03206 Eucalyptus grandis HOM05D007594 ORTHO05D009607 1.1e-14 83.2 73 57.5
Haze_02988 Corylus avellana HOM05D007594 ORTHO05D009607 1.3e-13 79.7 54 66.7
PSO384G4678 Papaver somniferum HOM05D007594 ORTHO05D009607 1.3e-13 79.7 51 72.5
vmacro13770 Vaccinium macrocarpon HOM05D007594 ORTHO05D009607 2.2e-13 79.0 55 69.1
SGA_v2.0_scaffold124G33645 Striga asiatica HOM05D007594 ORTHO05D009607 3.7e-13 78.2 90 46.7
SEGI_38959 Sequoiadendron giganteum HOM05D007594 ORTHO05D009607 4.8e-13 77.8 71 45.1
Nn7g36922 Nelumbo nucifera HOM05D007594 ORTHO05D009607 3.1e-12 75.1 51 68.6
Aqoxy1G00418 Aquilegia oxysepala HOM05D007594 ORTHO05D009607 4.1e-12 74.7 56 60.7
Hund03164 Selenicereus undatus HOM05D007594 ORTHO05D009607 1.5e-11 72.8 51 60.8
SalBow5G4015 Salvia bowleyana HOM05D007594 ORTHO05D009607 3.4e-11 71.6 88 44.3
Sed0005696 Sechium edule HOM05D007594 ORTHO05D009607 1.3e-10 69.7 74 51.4
Os03g0811200 Oryza sativa ssp. japonica HOM05D007594 ORTHO05D009607 2.9e-10 68.6 82 42.7
Zm00001eb062110 Zea mays HOM05D007594 ORTHO05D009607 2.9e-10 68.6 82 45.1
EL10Ac3g05954 Beta vulgaris HOM05D007594 ORTHO05D009607 5.0e-10 67.8 126 34.9
Lj2g0024514 Lotus japonicus HOM05D007594 ORTHO05D009607 6.5e-10 67.4 54 57.4
AUR62002319 Chenopodium quinoa HOM05D007594 ORTHO05D009607 1.4e-09 66.2 59 52.5


User provided reference genes

Program Settings