Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 1.1e-151 540.0 296 100.0
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 5.4e-114 414.8 301 77.7
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 1.4e-106 390.2 301 74.8
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 1.2e-105 387.1 301 74.1
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 1.2e-105 387.1 301 74.1
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 3.9e-104 382.1 295 73.2
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 2.5e-103 379.4 301 73.1
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 5.6e-103 378.3 301 71.8
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 7.3e-103 377.9 301 71.4
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 4.7e-102 375.2 295 72.9
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 6.2e-102 374.8 301 72.4
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 8.1e-102 374.4 301 72.4
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 1.1e-101 374.0 301 72.4
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 2.0e-100 369.8 301 72.4
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 4.4e-100 368.6 288 71.9
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 1.1e-98 364.0 299 69.9
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 3.2e-98 362.5 301 70.4
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.2e-97 360.5 300 70.3
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.6e-97 360.1 302 71.5
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.7e-97 359.4 300 70.3
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 3.5e-97 359.0 300 70.0
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 7.8e-97 357.8 300 70.0
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 5.1e-96 355.1 263 74.9
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 6.6e-96 354.8 309 68.6
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 8.6e-96 354.4 300 69.7
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 1.1e-95 354.0 301 67.4
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 3.3e-95 352.4 301 69.4
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 3.3e-95 352.4 296 69.3
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 3.3e-95 352.4 301 68.8
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 9.6e-95 350.9 296 68.9
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 2.1e-94 349.7 301 69.1
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 2.8e-94 349.4 301 70.1
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 3.6e-94 349.0 297 69.0
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 6.2e-94 348.2 301 69.4
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 6.2e-94 348.2 299 67.9
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 1.1e-93 347.4 300 68.7
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 3.1e-93 345.9 299 67.9
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 4.0e-93 345.5 300 69.0
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 5.2e-93 345.1 299 67.6
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 5.2e-93 345.1 301 68.1
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 6.9e-93 344.7 301 67.8
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 2.0e-92 343.2 268 71.6
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 4.4e-92 342.0 302 68.5
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 4.4e-92 342.0 262 74.8
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 5.8e-92 341.7 298 67.4
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 9.9e-92 340.9 302 67.5
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.3e-91 340.5 298 66.1
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 1.7e-91 340.1 296 66.6
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 1.1e-90 337.4 296 66.9
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 1.4e-90 337.0 298 67.1
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 3.2e-90 335.9 301 64.8
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 7.1e-90 334.7 300 66.7
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 7.1e-90 334.7 296 65.9
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 7.1e-90 334.7 296 65.9
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 9.3e-90 334.3 301 64.8
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 1.6e-89 333.6 297 66.0
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 1.6e-89 333.6 302 64.9
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 2.1e-89 333.2 327 64.5
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 3.5e-89 332.4 297 65.7
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 3.5e-89 332.4 297 65.7
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 6.0e-89 331.6 317 64.0
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 7.8e-89 331.3 296 65.9
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 7.8e-89 331.3 296 65.5
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 1.0e-88 330.9 323 62.5
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 1.3e-88 330.5 364 58.5
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 1.3e-88 330.5 264 70.1
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 1.7e-88 330.1 299 64.5
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 2.3e-88 329.7 299 65.6
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 2.3e-88 329.7 336 60.4
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 5.1e-88 328.6 296 65.5
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 6.6e-88 328.2 332 61.1
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 1.1e-87 327.4 300 65.3
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 1.9e-87 326.6 307 64.5
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 2.8e-86 322.8 278 68.3
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 4.0e-85 318.9 264 67.4
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 5.3e-85 318.5 304 63.5
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 5.3e-85 318.5 274 66.1
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 5.3e-85 318.5 285 64.9
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 1.5e-84 317.0 301 63.5
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 2.9e-83 312.8 300 63.3
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 3.8e-83 312.4 299 64.2
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 3.8e-83 312.4 297 63.0
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 4.9e-83 312.0 389 52.2
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 1.1e-82 310.8 377 54.4
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 2.4e-82 309.7 256 66.8
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 2.7e-81 306.2 305 62.3
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 1.8e-80 303.5 301 61.8
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 3.0e-80 302.8 217 77.4
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 3.9e-80 302.4 300 62.3
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 5.1e-80 302.0 300 61.7
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 1.5e-79 300.4 301 62.8
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 1.9e-79 300.1 300 61.3
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 1.9e-79 300.1 297 60.6
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 3.3e-79 299.3 299 61.5
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 8.1e-78 294.7 257 66.9
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 1.1e-77 294.3 264 64.0
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 2.4e-77 293.1 256 63.7
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 1.2e-76 290.8 256 65.2
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 9.9e-76 287.7 257 66.5
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 1.3e-75 287.3 392 50.3
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 1.6e-73 280.4 298 59.7
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 4.8e-70 268.9 296 57.1
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 5.3e-69 265.4 221 68.8
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 9.0e-69 264.6 201 75.6
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 5.8e-68 261.9 298 57.7
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 1.4e-66 257.3 258 61.6
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 2.5e-66 256.5 254 56.7
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 1.6e-65 253.8 243 62.6
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 4.8e-62 242.3 235 62.6
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 8.2e-62 241.5 310 54.8
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 7.6e-60 235.0 179 74.3
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 1.3e-59 234.2 186 74.2
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 9.4e-50 201.4 181 68.0
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 3.0e-48 196.4 245 46.1
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 3.9e-48 196.1 182 64.3
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 6.7e-48 195.3 245 45.7
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 3.3e-47 193.0 290 46.2
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 6.5e-43 178.7 240 45.8
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 1.1e-42 177.9 225 46.7
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.6e-41 174.1 135 71.9
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 1.0e-35 154.8 167 56.3
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 1.7e-35 154.1 246 39.0
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 6.1e-33 145.6 189 45.5
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 4.4e-31 139.4 122 64.8
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 9.7e-31 138.3 179 49.7
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 2.4e-29 133.7 133 59.4
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 1.2e-28 131.3 123 64.2
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 1.5e-26 124.4 79 87.3
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 4.2e-26 122.9 238 36.6
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 5.2e-24 115.9 178 44.4
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 1.2e-23 114.8 123 54.5
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 4.4e-23 112.8 130 53.8
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 8.6e-19 98.6 110 53.6
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 8.6e-19 98.6 110 53.6
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 1.6e-17 94.4 101 58.4
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 4.7e-17 92.8 110 51.8
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 5.9e-12 75.9 62 64.5
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 5.0e-11 72.8 180 28.9
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 4.7e-09 66.2 172 33.7
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 5.2e-08 62.8 49 63.3
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 5.2e-08 62.8 49 63.3
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 5.2e-08 62.8 49 63.3
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 5.2e-08 62.8 49 63.3
MCO03G437 Micromonas commoda HOM05D005102 ORTHO05D006090 2.6e-07 60.5 152 34.9


User provided reference genes

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