Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 5.4e-23 110.2 56 100.0
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 1.9e-20 101.7 56 92.9
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 8.9e-18 92.8 50 90.0
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 2.0e-17 91.7 56 80.4
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 2.0e-17 91.7 56 82.1
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 3.4e-17 90.9 50 90.0
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 4.4e-17 90.5 56 82.1
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 5.8e-17 90.1 56 82.1
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 7.5e-17 89.7 55 81.8
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 9.8e-17 89.4 56 80.4
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.7e-16 88.6 56 80.4
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 1.7e-16 88.6 56 80.4
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 2.2e-16 88.2 56 85.7
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 2.2e-16 88.2 56 76.8
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 2.2e-16 88.2 51 84.3
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 2.2e-16 88.2 54 83.3
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 2.9e-16 87.8 56 80.4
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 2.9e-16 87.8 56 80.4
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 2.9e-16 87.8 56 80.4
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 2.9e-16 87.8 51 88.2
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 6.4e-16 86.7 56 78.6
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 6.4e-16 86.7 50 84.0
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 8.3e-16 86.3 56 78.6
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 1.9e-15 85.1 52 80.8
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 4.1e-15 84.0 51 84.3
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 4.1e-15 84.0 46 89.1
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 4.1e-15 84.0 54 77.8
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 5.4e-15 83.6 52 78.8
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 5.4e-15 83.6 56 76.8
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 7.0e-15 83.2 44 93.2
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 7.0e-15 83.2 56 76.8
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 1.2e-14 82.4 57 77.2
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 1.6e-14 82.0 49 85.7
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 1.6e-14 82.0 52 80.8
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 1.6e-14 82.0 57 73.7
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 1.6e-14 82.0 51 82.4
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 2.0e-14 81.6 52 75.0
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 2.0e-14 81.6 51 84.3
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 2.7e-14 81.3 51 84.3
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 2.7e-14 81.3 52 80.8
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 2.7e-14 81.3 57 80.7
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 4.6e-14 80.5 53 81.1
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 4.6e-14 80.5 54 77.8
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 6.0e-14 80.1 50 84.0
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 6.0e-14 80.1 52 82.7
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 7.8e-14 79.7 50 84.0
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 7.8e-14 79.7 53 77.4
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 7.8e-14 79.7 52 73.1
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 7.8e-14 79.7 52 73.1
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 7.8e-14 79.7 51 78.4
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 1.0e-13 79.3 52 80.8
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 1.0e-13 79.3 57 75.4
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 1.0e-13 79.3 52 73.1
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 1.0e-13 79.3 56 78.6
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 1.3e-13 79.0 54 75.9
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 1.3e-13 79.0 51 80.4
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 1.3e-13 79.0 51 80.4
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 1.3e-13 79.0 52 73.1
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 1.7e-13 78.6 45 84.4
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 1.7e-13 78.6 44 86.4
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 1.7e-13 78.6 42 88.1
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 1.7e-13 78.6 52 73.1
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 2.3e-13 78.2 40 95.0
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 2.3e-13 78.2 44 86.4
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 2.3e-13 78.2 51 74.5
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.3e-13 78.2 51 74.5
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.3e-13 78.2 51 74.5
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.3e-13 78.2 57 73.7
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 2.3e-13 78.2 46 82.6
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 3.0e-13 77.8 44 88.6
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 3.0e-13 77.8 44 88.6
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 3.0e-13 77.8 40 95.0
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 3.0e-13 77.8 56 73.2
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 3.0e-13 77.8 46 84.8
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 3.0e-13 77.8 42 90.5
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 3.9e-13 77.4 50 78.0
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 3.9e-13 77.4 44 86.4
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 3.9e-13 77.4 52 82.7
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 3.9e-13 77.4 52 78.8
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 3.9e-13 77.4 50 84.0
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 3.9e-13 77.4 59 72.9
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 3.9e-13 77.4 59 72.9
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 3.9e-13 77.4 56 67.9
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 5.0e-13 77.0 52 76.9
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 5.0e-13 77.0 58 70.7
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 5.0e-13 77.0 56 69.6
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 6.6e-13 76.6 40 92.5
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 6.6e-13 76.6 40 92.5
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 6.6e-13 76.6 40 92.5
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 6.6e-13 76.6 52 78.8
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 8.6e-13 76.3 50 80.0
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 8.6e-13 76.3 44 86.4
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 8.6e-13 76.3 44 86.4
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 8.6e-13 76.3 44 86.4
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 8.6e-13 76.3 44 81.8
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 8.6e-13 76.3 52 80.8
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 8.6e-13 76.3 56 71.4
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 8.6e-13 76.3 55 70.9
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 8.6e-13 76.3 62 67.7
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 1.1e-12 75.9 51 70.6
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 1.1e-12 75.9 40 90.0
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 1.1e-12 75.9 61 70.5
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 1.5e-12 75.5 40 92.5
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 1.5e-12 75.5 40 92.5
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 1.5e-12 75.5 50 74.0
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 1.5e-12 75.5 51 72.5
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 1.5e-12 75.5 51 78.4
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 1.9e-12 75.1 51 76.5
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 1.9e-12 75.1 44 84.1
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.9e-12 75.1 51 72.5
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.9e-12 75.1 40 87.5
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 2.5e-12 74.7 56 73.2
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 2.5e-12 74.7 52 76.9
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.5e-12 74.7 56 71.4
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 3.3e-12 74.3 52 73.1
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 4.3e-12 73.9 56 66.1
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 5.6e-12 73.6 40 85.0
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 5.6e-12 73.6 51 72.5
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 7.3e-12 73.2 48 72.9
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 7.3e-12 73.2 50 76.0
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 7.3e-12 73.2 47 76.6
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 9.5e-12 72.8 50 74.0
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 9.5e-12 72.8 48 75.0
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 9.5e-12 72.8 57 66.7
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 1.2e-11 72.4 56 67.9
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 1.2e-11 72.4 37 94.6
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 1.2e-11 72.4 45 75.6
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 1.6e-11 72.0 40 82.5
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 1.6e-11 72.0 51 68.6
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 2.8e-11 71.2 56 67.9
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 3.6e-11 70.9 46 73.9
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 3.6e-11 70.9 40 80.0
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 3.6e-11 70.9 40 80.0
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 3.6e-11 70.9 54 66.7
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 4.7e-11 70.5 56 66.1
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 8.0e-11 69.7 45 77.8
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.4e-10 68.9 54 72.2
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 8.9e-10 66.2 40 75.0
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 8.9e-10 66.2 38 81.6
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 8.9e-10 66.2 38 81.6
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 1.5e-09 65.5 49 69.4
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 2.0e-09 65.1 37 83.8
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 2.0e-09 65.1 36 83.3
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 2.6e-09 64.7 51 66.7
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 2.6e-09 64.7 51 66.7
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 3.4e-09 64.3 33 93.9
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 7.5e-09 63.2 40 75.0
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 9.8e-09 62.8 51 60.8
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.3e-08 62.4 55 63.6
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 1.3e-08 62.4 39 71.8
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 2.2e-08 61.6 40 75.0
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 2.2e-08 61.6 40 70.0
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 4.9e-08 60.5 40 67.5
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 6.4e-08 60.1 40 70.0
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 1.9e-07 58.5 42 64.3
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 3.5e-06 54.3 40 60.0


User provided reference genes

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