Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.115 Acer truncatum HOM05D002655 ORTHO05D002558 1.3e-111 406.4 207 100.0
Ciclev10031321m.g Citrus clementina HOM05D002655 ORTHO05D002558 2.3e-63 246.1 176 73.3
Haze_17293 Corylus avellana HOM05D002655 ORTHO05D002558 5.0e-58 228.4 175 65.7
Potri.010G183100 Populus trichocarpa HOM05D002655 ORTHO05D002558 1.5e-57 226.9 176 69.3
TAR633G1667 Trochodendron aralioides HOM05D002655 ORTHO05D002558 1.5e-57 226.9 175 67.4
Cfa001258 Carpinus fangiana HOM05D002655 ORTHO05D002558 3.2e-57 225.7 176 65.9
QL08p063992 Quercus lobata HOM05D002655 ORTHO05D002558 3.2e-57 225.7 178 67.4
MD01G1159800 Malus domestica HOM05D002655 ORTHO05D002558 4.2e-57 225.3 175 65.7
Phvul.008G219800 Phaseolus vulgaris HOM05D002655 ORTHO05D002558 4.2e-57 225.3 187 64.2
COL.COLO4_25808 Corchorus olitorius HOM05D002655 ORTHO05D002558 5.5e-57 224.9 176 68.2
Gorai.010G193800 Gossypium raimondii HOM05D002655 ORTHO05D002558 1.6e-56 223.4 176 67.6
Gohir.D06G166200 Gossypium hirsutum HOM05D002655 ORTHO05D002558 2.1e-56 223.0 176 67.6
Sabra10G0140400 Salix brachista HOM05D002655 ORTHO05D002558 2.1e-56 223.0 176 68.2
VMungo0647G0549 Vigna mungo HOM05D002655 ORTHO05D002558 1.0e-55 220.7 175 66.3
Gohir.A06G160175 Gossypium hirsutum HOM05D002655 ORTHO05D002558 1.8e-55 219.9 176 67.0
Prupe.2G257800 Prunus persica HOM05D002655 ORTHO05D002558 3.0e-55 219.2 175 62.9
Duzib106G0019 Durio zibethinus HOM05D002655 ORTHO05D002558 4.0e-55 218.8 163 69.3
Glyma.02G261000 Glycine max HOM05D002655 ORTHO05D002558 4.0e-55 218.8 175 64.0
Thecc.10G009000 Theobroma cacao HOM05D002655 ORTHO05D002558 1.7e-53 213.4 176 66.5
GSVIVG01032739001 Vitis vinifera HOM05D002655 ORTHO05D002558 1.7e-53 213.4 176 65.9
Dinv10575 Davidia involucrata HOM05D002655 ORTHO05D002558 4.8e-53 211.8 175 66.3
TWI59G0767 Tripterygium wilfordii HOM05D002655 ORTHO05D002558 6.3e-53 211.5 178 64.0
TWI14G0122 Tripterygium wilfordii HOM05D002655 ORTHO05D002558 7.0e-52 208.0 176 65.9
RcHm_v2.0_Chr1g0371291 Rosa chinensis HOM05D002655 ORTHO05D002558 1.2e-51 207.2 176 61.4
Peaxi162Scf01149g00019 Petunia axillaris HOM05D002655 ORTHO05D002558 3.5e-51 205.7 189 58.2
Lalb_Chr10g0105341 Lupinus albus HOM05D002655 ORTHO05D002558 2.9e-50 202.6 178 63.5
arahy.Tifrunner.gnm1.ann1.492DM0 Arachis hypogaea HOM05D002655 ORTHO05D002558 5.0e-50 201.8 182 61.0
arahy.Tifrunner.gnm1.ann1.JHLY2S Arachis hypogaea HOM05D002655 ORTHO05D002558 5.0e-50 201.8 182 61.0
Nn2g11017 Nelumbo nucifera HOM05D002655 ORTHO05D002558 5.0e-50 201.8 189 58.2
TPR.G30443 Trifolium pratense HOM05D002655 ORTHO05D002558 5.0e-50 201.8 182 60.4
Rhsim03G0147900 Rhododendron simsii HOM05D002655 ORTHO05D002558 8.6e-50 201.1 175 61.7
FAN03G1220 Fragaria x ananassa HOM05D002655 ORTHO05D002558 1.1e-49 200.7 176 59.7
Sed0024814 Sechium edule HOM05D002655 ORTHO05D002558 2.5e-49 199.5 175 61.1
Nitab4.5_0026398g0010 Nicotiana tabacum HOM05D002655 ORTHO05D002558 4.2e-49 198.7 174 59.8
Psat2g029840 Pisum sativum HOM05D002655 ORTHO05D002558 4.2e-49 198.7 177 59.9
LjContig00357g0012654 Lotus japonicus HOM05D002655 ORTHO05D002558 7.2e-49 198.0 185 56.8
Manes.10G007400 Manihot esculenta HOM05D002655 ORTHO05D002558 9.5e-49 197.6 175 63.4
FAN06G3888 Fragaria x ananassa HOM05D002655 ORTHO05D002558 1.2e-48 197.2 176 59.1
ClCG07G004720 Citrullus lanatus HOM05D002655 ORTHO05D002558 1.6e-48 196.8 175 60.6
CSS0020664 Camellia sinensis var. sinensis HOM05D002655 ORTHO05D002558 3.6e-48 195.7 175 60.0
Medtr5g083500 Medicago truncatula HOM05D002655 ORTHO05D002558 4.7e-48 195.3 181 58.0
Nitab4.5_0003402g0050 Nicotiana tabacum HOM05D002655 ORTHO05D002558 6.1e-48 194.9 174 58.6
FvH4_7g25370 Fragaria vesca HOM05D002655 ORTHO05D002558 1.0e-47 194.1 176 58.5
Nn2g13265 Nelumbo nucifera HOM05D002655 ORTHO05D002558 1.0e-47 194.1 175 57.1
CANSAT56G2388 Cannabis sativa HOM05D002655 ORTHO05D002558 3.0e-47 192.6 177 58.2
CSS0048880 Camellia sinensis var. sinensis HOM05D002655 ORTHO05D002558 5.2e-47 191.8 175 59.4
MELO3C020096.2 Cucumis melo HOM05D002655 ORTHO05D002558 5.2e-47 191.8 180 58.9
CsaV3_5G010650 Cucumis sativus L. HOM05D002655 ORTHO05D002558 1.2e-46 190.7 180 58.3
vmacro06940 Vaccinium macrocarpon HOM05D002655 ORTHO05D002558 1.5e-46 190.3 175 58.3
MELO3C020095.2 Cucumis melo HOM05D002655 ORTHO05D002558 2.8e-45 186.0 175 56.0
PGSC0003DMG400019944 Solanum tuberosum HOM05D002655 ORTHO05D002558 2.8e-45 186.0 182 53.8
CiPaw.02G196500 Carya illinoinensis HOM05D002655 ORTHO05D002558 6.3e-45 184.9 181 56.4
Aa31LG5G19190 Aethionema arabicum HOM05D002655 ORTHO05D002558 1.1e-44 184.1 175 54.3
Thhalv10016559m.g Eutrema salsugineum HOM05D002655 ORTHO05D002558 3.1e-44 182.6 177 56.5
CAN.G203.24 Capsicum annuum HOM05D002655 ORTHO05D002558 5.4e-44 181.8 190 52.1
CiPaw.01G302400 Carya illinoinensis HOM05D002655 ORTHO05D002558 5.4e-44 181.8 153 61.4
THA.LOC104810129 Tarenaya hassleriana HOM05D002655 ORTHO05D002558 9.2e-44 181.0 177 56.5
DCAR_027543 Daucus carota HOM05D002655 ORTHO05D002558 1.2e-43 180.6 177 57.6
Eucgr.J00165 Eucalyptus grandis HOM05D002655 ORTHO05D002558 1.6e-43 180.3 177 56.5
BcaC02g12155 Brassica carinata HOM05D002655 ORTHO05D002558 5.9e-43 178.3 177 54.2
C04p07000 Brassica napus HOM05D002655 ORTHO05D002558 5.9e-43 178.3 177 54.2
BolC4t22321H Brassica oleracea HOM05D002655 ORTHO05D002558 5.9e-43 178.3 177 54.2
CSS0028673 Camellia sinensis var. sinensis HOM05D002655 ORTHO05D002558 5.9e-43 178.3 175 56.6
Lj6g0018045 Lotus japonicus HOM05D002655 ORTHO05D002558 5.9e-43 178.3 172 54.1
Sp4g22710 Schrenkiella parvula HOM05D002655 ORTHO05D002558 5.9e-43 178.3 178 55.1
TPR.G30920 Trifolium pratense HOM05D002655 ORTHO05D002558 5.9e-43 178.3 173 55.5
Solyc10g018120.2 Solanum lycopersicum HOM05D002655 ORTHO05D002558 7.8e-43 177.9 182 52.2
CsaV3_5G010640 Cucumis sativus L. HOM05D002655 ORTHO05D002558 1.0e-42 177.6 175 54.3
BcaB02g09025 Brassica carinata HOM05D002655 ORTHO05D002558 1.3e-42 177.2 177 54.2
Lalb_Chr08g0231431 Lupinus albus HOM05D002655 ORTHO05D002558 2.3e-42 176.4 176 53.4
Cc02_g05900 Coffea canephora HOM05D002655 ORTHO05D002558 2.9e-42 176.0 175 53.7
BraA05t19571Z Brassica rapa HOM05D002655 ORTHO05D002558 3.8e-42 175.6 177 54.2
Medtr3g071950 Medicago truncatula HOM05D002655 ORTHO05D002558 3.8e-42 175.6 176 52.8
AL4G38210 Arabidopsis lyrata HOM05D002655 ORTHO05D002558 5.0e-42 175.3 177 54.2
Psat5g132160 Pisum sativum HOM05D002655 ORTHO05D002558 8.6e-42 174.5 175 54.3
PGR044G1037 Punica granatum HOM05D002655 ORTHO05D002558 1.9e-41 173.3 200 51.0
CARHR135470 Cardamine hirsuta HOM05D002655 ORTHO05D002558 4.3e-41 172.2 177 53.1
Carub.0004s2263 Capsella rubella HOM05D002655 ORTHO05D002558 9.5e-41 171.0 176 54.0
AT2G40390 Arabidopsis thaliana HOM05D002655 ORTHO05D002558 1.2e-40 170.6 177 53.1
VMungo1383G2715 Vigna mungo HOM05D002655 ORTHO05D002558 2.8e-40 169.5 177 53.7
SalBow3G2865 Salvia bowleyana HOM05D002655 ORTHO05D002558 3.6e-40 169.1 178 52.8
Phvul.001G246900 Phaseolus vulgaris HOM05D002655 ORTHO05D002558 6.1e-40 168.3 177 52.5
Sc11g0005430 Simmondsia chinensis HOM05D002655 ORTHO05D002558 6.1e-40 168.3 177 53.1
Aqoxy1G01282 Aquilegia oxysepala HOM05D002655 ORTHO05D002558 1.0e-39 167.5 173 52.0
PSO339G6376 Papaver somniferum HOM05D002655 ORTHO05D002558 1.8e-39 166.8 175 54.9
PSO384G4829 Papaver somniferum HOM05D002655 ORTHO05D002558 1.8e-39 166.8 175 54.3
AUR62012318 Chenopodium quinoa HOM05D002655 ORTHO05D002558 3.0e-39 166.0 175 50.3
A05p06080 Brassica napus HOM05D002655 ORTHO05D002558 4.0e-39 165.6 179 52.5
EL10Ac2g04910 Beta vulgaris HOM05D002655 ORTHO05D002558 8.9e-39 164.5 177 50.3
arahy.Tifrunner.gnm1.ann1.3X2JKH Arachis hypogaea HOM05D002655 ORTHO05D002558 5.8e-38 161.8 181 51.9
arahy.Tifrunner.gnm1.ann1.YSF7P1 Arachis hypogaea HOM05D002655 ORTHO05D002558 1.7e-37 160.2 182 50.5
Sp2g27250 Schrenkiella parvula HOM05D002655 ORTHO05D002558 8.3e-37 157.9 183 49.2
MSTRG.27297 Avicennia marina HOM05D002655 ORTHO05D002558 1.4e-36 157.1 173 54.3
Aqoxy2G00775 Aquilegia oxysepala HOM05D002655 ORTHO05D002558 1.9e-36 156.8 178 51.1
Oeu051648.1 Olea europaea HOM05D002655 ORTHO05D002558 4.1e-36 155.6 195 49.7
BcaB02g09778 Brassica carinata HOM05D002655 ORTHO05D002558 9.2e-36 154.5 179 48.6
A06p30910 Brassica napus HOM05D002655 ORTHO05D002558 9.2e-36 154.5 179 48.6
BraA06t26030Z Brassica rapa HOM05D002655 ORTHO05D002558 9.2e-36 154.5 179 48.6
HanXRQChr07g0203491 Helianthus annuus HOM05D002655 ORTHO05D002558 9.2e-36 154.5 180 50.0
Hund15873 Selenicereus undatus HOM05D002655 ORTHO05D002558 2.7e-35 152.9 175 46.3
BcaC01g02676 Brassica carinata HOM05D002655 ORTHO05D002558 3.5e-35 152.5 179 48.0
C03p62060 Brassica napus HOM05D002655 ORTHO05D002558 3.5e-35 152.5 179 48.0
BolC3t18467H Brassica oleracea HOM05D002655 ORTHO05D002558 3.5e-35 152.5 179 48.0
THA.LOC104799957 Tarenaya hassleriana HOM05D002655 ORTHO05D002558 4.6e-35 152.1 166 49.4
MSTRG.8917 Avicennia marina HOM05D002655 ORTHO05D002558 6.0e-35 151.8 169 52.1
Thhalv10005630m.g Eutrema salsugineum HOM05D002655 ORTHO05D002558 6.0e-35 151.8 201 44.3
Migut.F00622 Erythranthe guttata HOM05D002655 ORTHO05D002558 7.8e-35 151.4 179 52.0
AL8G41460 Arabidopsis lyrata HOM05D002655 ORTHO05D002558 1.0e-34 151.0 196 45.4
Lsat_1_v5_gn_2_125740 Lactuca sativa HOM05D002655 ORTHO05D002558 8.6e-34 147.9 175 48.6
HanXRQChr14g0458771 Helianthus annuus HOM05D002655 ORTHO05D002558 1.1e-33 147.5 175 46.9
Os01g0165100 Oryza sativa ssp. japonica HOM05D002655 ORTHO05D002558 7.3e-33 144.8 181 44.2
AT5G64190 Arabidopsis thaliana HOM05D002655 ORTHO05D002558 1.6e-32 143.7 179 46.9
HPP92_001129 Vanilla planifolia HOM05D002655 ORTHO05D002558 1.1e-31 141.0 191 46.6
Carub.0008s2498 Capsella rubella HOM05D002655 ORTHO05D002558 5.2e-31 138.7 196 42.9
MBI15_g16138_MAGBIO Magnolia biondii HOM05D002655 ORTHO05D002558 1.7e-29 133.7 132 56.8
Aa31LG1G17710 Aethionema arabicum HOM05D002655 ORTHO05D002558 2.9e-29 132.9 177 45.8
Lsat_1_v5_gn_2_125641 Lactuca sativa HOM05D002655 ORTHO05D002558 3.9e-26 122.5 174 41.4
ATR0594G035 Amborella trichopoda HOM05D002655 ORTHO05D002558 4.3e-25 119.0 170 42.4
Os07g0231800 Oryza sativa ssp. japonica HOM05D002655 ORTHO05D002558 2.8e-24 116.3 170 41.2
SGA_v2.0_scaffold60G20951 Striga asiatica HOM05D002655 ORTHO05D002558 3.6e-24 115.9 190 42.6
unitig_37.g12463 Utricularia gibba HOM05D002655 ORTHO05D002558 7.1e-20 101.7 178 37.6
Sopen10g007160 Solanum pennellii HOM05D002655 ORTHO05D002558 8.4e-13 78.2 67 56.7
SEGI_02192 Sequoiadendron giganteum HOM05D002655 ORTHO05D002558 1.1e-12 77.8 170 32.9
Ah.10g036090 Amaranthus hybridus HOM05D002655 ORTHO05D002558 1.0e-10 71.2 61 55.7
SEGI_18342 Sequoiadendron giganteum HOM05D002655 ORTHO05D002558 1.7e-10 70.5 177 33.9
Cpa.g.sc19.115 Carica papaya HOM05D002655 ORTHO05D002558 7.3e-09 65.1 36 86.1


User provided reference genes

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