Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1049 Acer truncatum HOM05D007506 ORTHO05D008409 2.0e-23 112.1 80 100.0
Ciclev10017346m.g Citrus clementina HOM05D007506 ORTHO05D008409 4.1e-16 87.8 82 84.1
Manes.07G086800 Manihot esculenta HOM05D007506 ORTHO05D008409 3.5e-15 84.7 55 81.8
Haze_03301 Corylus avellana HOM05D007506 ORTHO05D008409 4.5e-15 84.3 59 78.0
Potri.010G240401 Populus trichocarpa HOM05D007506 ORTHO05D008409 5.9e-15 84.0 57 82.5
Duzib106G0675 Durio zibethinus HOM05D007506 ORTHO05D008409 1.7e-14 82.4 60 75.0
CiPaw.14G033800 Carya illinoinensis HOM05D007506 ORTHO05D008409 2.9e-14 81.6 59 79.7
PGR142G2547 Punica granatum HOM05D007506 ORTHO05D008409 1.5e-13 79.3 57 75.4
QL04p046828 Quercus lobata HOM05D007506 ORTHO05D008409 5.5e-13 77.4 59 78.0
THA.LOC104816468 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 5.5e-13 77.4 52 75.0
THA.LOC109117254 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 7.2e-13 77.0 53 75.5
Potri.008G016801 Populus trichocarpa HOM05D007506 ORTHO05D008409 1.2e-12 76.3 57 75.4
RcHm_v2.0_Chr1g0331731 Rosa chinensis HOM05D007506 ORTHO05D008409 2.1e-12 75.5 56 71.4
TWI38G1985 Tripterygium wilfordii HOM05D007506 ORTHO05D008409 2.7e-12 75.1 50 78.0
Sabra08G0010500 Salix brachista HOM05D007506 ORTHO05D008409 3.6e-12 74.7 57 73.7
Manes.10G062500 Manihot esculenta HOM05D007506 ORTHO05D008409 8.0e-12 73.6 58 72.4
Thecc.10G114000 Theobroma cacao HOM05D007506 ORTHO05D008409 8.0e-12 73.6 59 74.6
CARHR208540 Cardamine hirsuta HOM05D012863 ORTHO05D008409 1.0e-11 73.2 68 64.7
Cpa.g.sc54.9 Carica papaya HOM05D007506 ORTHO05D008409 6.7e-11 70.5 50 76.0
TAR633G2594 Trochodendron aralioides HOM05D007506 ORTHO05D008409 2.0e-10 68.9 57 66.7
Cfa010331 Carpinus fangiana HOM05D007506 ORTHO05D008409 7.5e-10 67.0 48 75.0
Sabra10G0188200 Salix brachista HOM05D007506 ORTHO05D008409 7.5e-10 67.0 76 59.2
Carub.0006s0364 Capsella rubella HOM05D012863 ORTHO05D008409 9.7e-10 66.6 53 69.8
Lj5g0016646 Lotus japonicus HOM05D007506 ORTHO05D008409 1.3e-09 66.2 59 72.9
Migut.F00865 Erythranthe guttata HOM05D007506 ORTHO05D008409 2.8e-09 65.1 61 62.3
Ca_25653_v3 Cicer arietinum L. HOM05D007506 ORTHO05D008409 3.7e-09 64.7 57 70.2
AL6G14410 Arabidopsis lyrata HOM05D012863 ORTHO05D008409 4.8e-09 64.3 53 66.0
SalBow3G3829 Salvia bowleyana HOM05D007506 ORTHO05D008409 6.3e-09 63.9 49 69.4
Sp6g38070 Schrenkiella parvula HOM05D012863 ORTHO05D008409 6.3e-09 63.9 53 66.0
Medtr1g111840 Medicago truncatula HOM05D007506 ORTHO05D008409 1.1e-08 63.2 57 66.7
A03p01810 Brassica napus HOM05D012863 ORTHO05D008409 1.4e-08 62.8 63 55.6
C03p02190 Brassica napus HOM05D012863 ORTHO05D008409 1.4e-08 62.8 63 55.6
BolC3t12770H Brassica oleracea HOM05D012863 ORTHO05D008409 1.4e-08 62.8 63 55.6
BraA03t09553Z Brassica rapa HOM05D012863 ORTHO05D008409 1.4e-08 62.8 63 55.6
Peaxi162Scf00519g00621 Petunia axillaris HOM05D007506 ORTHO05D008409 1.8e-08 62.4 53 69.8
MD07G1070900 Malus domestica HOM05D007506 ORTHO05D008409 2.4e-08 62.0 54 61.1
GSVIVG01010679001 Vitis vinifera HOM05D007506 ORTHO05D008409 2.4e-08 62.0 40 77.5
CANSAT56G4328 Cannabis sativa HOM05D007506 ORTHO05D008409 3.1e-08 61.6 52 61.5
Dinv12843 Davidia involucrata HOM05D007506 ORTHO05D008409 3.1e-08 61.6 60 63.3
MBI17_g08330_MAGBIO Magnolia biondii HOM05D007506 ORTHO05D008409 4.1e-08 61.2 57 59.6
AT5G04750 Arabidopsis thaliana HOM05D012863 ORTHO05D008409 7.0e-08 60.5 49 69.4
TPR.G2499 Trifolium pratense HOM05D007506 ORTHO05D008409 7.0e-08 60.5 57 68.4
CSS0050385 Camellia sinensis var. sinensis HOM05D007506 ORTHO05D008409 9.1e-08 60.1 53 66.0
CiPaw.13G041100 Carya illinoinensis HOM05D007506 ORTHO05D008409 1.2e-07 59.7 37 81.1
Phvul.007G023500 Phaseolus vulgaris HOM05D007506 ORTHO05D008409 1.6e-07 59.3 57 63.2
Hund06790 Selenicereus undatus HOM05D007506 ORTHO05D008409 1.6e-07 59.3 63 61.9
VMungo0720G0153 Vigna mungo HOM05D007506 ORTHO05D008409 1.6e-07 59.3 57 64.9
CDE12G0642 Ceratophyllum demersum HOM05D007506 ORTHO05D008409 2.7e-07 58.5 57 57.9
Nitab4.5_0002586g0040 Nicotiana tabacum HOM05D007506 ORTHO05D008409 2.7e-07 58.5 60 58.3
Psat6g238400 Pisum sativum HOM05D007506 ORTHO05D008409 2.7e-07 58.5 54 64.8
Solyc11g006750.1 Solanum lycopersicum HOM05D007506 ORTHO05D008409 3.5e-07 58.2 55 65.5
PSO801G0534 Papaver somniferum HOM05D007506 ORTHO05D008409 4.5e-07 57.8 58 56.9
Sc20g0001140 Simmondsia chinensis HOM05D007506 ORTHO05D008409 4.5e-07 57.8 54 55.6
Glyma.10G277900 Glycine max HOM05D007506 ORTHO05D008409 5.9e-07 57.4 58 62.1
Sopen11g002680 Solanum pennellii HOM05D007506 ORTHO05D008409 5.9e-07 57.4 55 65.5
Cc02_g09560 Coffea canephora HOM05D007506 ORTHO05D008409 7.7e-07 57.0 56 58.9
FvH4_7g05151 Fragaria vesca HOM05D007506 ORTHO05D008409 1.0e-06 56.6 57 56.1
FAN05G5073 Fragaria x ananassa HOM05D007506 ORTHO05D008409 1.0e-06 56.6 57 56.1
FAN08G2571 Fragaria x ananassa HOM05D007506 ORTHO05D008409 1.0e-06 56.6 57 56.1
FAN28G2052 Fragaria x ananassa HOM05D007506 ORTHO05D008409 1.0e-06 56.6 57 56.1
Nitab4.5_0010633g0010 Nicotiana tabacum HOM05D007506 ORTHO05D008409 1.0e-06 56.6 59 57.6
Zm00001eb252110 Zea mays HOM05D000188 ORTHO05D003976 1.0e-06 56.6 60 56.7
PSO339G4482 Papaver somniferum HOM05D007506 ORTHO05D008409 1.3e-06 56.2 58 55.2
CAN.G1373.1 Capsicum annuum HOM05D007506 ORTHO05D008409 1.7e-06 55.8 56 60.7
ClCG08G008330 Citrullus lanatus HOM05D007506 ORTHO05D008409 1.7e-06 55.8 53 64.2
Zm00001eb242800 Zea mays HOM05D007506 ORTHO05D008409 2.2e-06 55.5 50 64.0
AUR62042085 Chenopodium quinoa HOM05D007506 ORTHO05D008409 2.9e-06 55.1 62 59.7
EL10Ac4g08692 Beta vulgaris HOM05D007506 ORTHO05D008409 3.8e-06 54.7 61 59.0
COL.COLO4_37375 Corchorus olitorius HOM05D007506 ORTHO05D008409 3.8e-06 54.7 50 68.0
CsaV3_6G004310 Cucumis sativus L. HOM05D007506 ORTHO05D008409 3.8e-06 54.7 51 62.7
Hma1.2p1_0756F.1_g213210 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 3.8e-06 54.7 56 57.1
Hma1.2p1_0756F.1_g213215 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 3.8e-06 54.7 56 57.1
Hma1.2p1_1491F.1_g286710 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 3.8e-06 54.7 56 57.1
Nitab4.5_0005214g0030 Nicotiana tabacum HOM05D007506 ORTHO05D008409 3.8e-06 54.7 59 57.6
Oeu024806.1 Olea europaea HOM05D007506 ORTHO05D008409 3.8e-06 54.7 61 55.7
SEGI_39886 Sequoiadendron giganteum HOM05D007506 ORTHO05D008409 3.8e-06 54.7 56 55.4
Glyma.20G110900 Glycine max HOM05D007506 ORTHO05D008409 5.0e-06 54.3 59 62.7
Lalb_Chr06g0166331 Lupinus albus HOM05D007506 ORTHO05D008409 5.0e-06 54.3 47 68.1
MELO3C019903.2 Cucumis melo HOM05D007506 ORTHO05D008409 6.5e-06 53.9 53 62.3
PGSC0003DMG400023979 Solanum tuberosum HOM05D007506 ORTHO05D008409 6.5e-06 53.9 55 61.8
Aqoxy7G00781 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 8.5e-06 53.5 60 56.7
unitig_899.g14468 Utricularia gibba HOM05D007506 ORTHO05D008409 8.5e-06 53.5 40 67.5


User provided reference genes

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