Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 0.0e+00 2343.2 1130 100.0
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 7.7e-294 1014.2 672 73.2
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 2.4e-287 992.6 668 71.1
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.1e-281 973.8 670 70.3
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 1.2e-275 953.7 683 66.6
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 4.0e-274 948.7 651 67.9
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 3.7e-272 942.2 664 68.7
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 3.7e-272 942.2 696 65.5
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 1.0e-269 934.1 670 66.0
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.3e-269 933.7 656 67.5
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 5.5e-268 928.3 661 68.2
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.8e-266 923.3 693 65.4
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 5.7e-265 918.3 642 67.6
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 7.5e-265 917.9 704 64.2
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 3.8e-261 905.6 659 66.0
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 2.5e-260 902.9 670 64.0
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 9.5e-260 901.0 659 65.4
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 8.0e-259 897.9 659 65.3
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.0e-258 896.0 659 64.8
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 6.8e-258 894.8 682 63.8
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 2.0e-257 893.3 594 72.1
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 9.2e-255 884.4 673 64.0
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 1.6e-254 883.6 649 65.2
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 5.9e-254 881.7 665 63.3
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.3e-253 880.6 664 64.3
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 6.6e-253 878.2 656 64.8
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.9e-252 876.7 673 62.7
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 3.3e-252 875.9 667 64.5
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 7.3e-252 874.8 669 62.8
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 9.5e-252 874.4 656 63.6
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 3.6e-251 872.5 703 60.2
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 8.0e-251 871.3 664 62.3
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 1.8e-250 870.2 663 64.9
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 4.0e-250 869.0 656 63.0
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 6.8e-250 868.2 654 64.7
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 2.6e-249 866.3 669 63.5
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 2.6e-249 866.3 662 63.4
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 7.5e-249 864.8 664 63.7
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 7.5e-249 864.8 661 63.7
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 1.7e-248 863.6 665 63.3
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 2.2e-248 863.2 651 64.5
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 2.9e-248 862.8 644 63.5
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 4.9e-248 862.1 704 60.5
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 3.2e-247 859.4 656 62.2
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 5.4e-247 858.6 667 63.1
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 1.6e-246 857.1 658 62.6
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 1.6e-246 857.1 681 62.7
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 2.7e-246 856.3 662 63.0
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.0e-245 854.4 689 61.2
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 2.3e-245 853.2 683 60.9
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 3.9e-245 852.4 644 64.0
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.0e-245 852.0 695 61.3
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 6.6e-245 851.7 667 63.1
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 8.6e-245 851.3 664 62.0
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 8.6e-245 851.3 689 61.2
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 8.6e-245 851.3 644 63.7
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.1e-244 850.9 663 61.4
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 1.5e-244 850.5 591 68.7
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 1.9e-244 850.1 663 61.4
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 3.3e-244 849.4 672 60.4
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 3.1e-242 842.8 650 62.6
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 2.0e-241 840.1 663 62.4
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.1e-239 834.3 622 65.4
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 5.4e-239 832.0 648 61.9
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 1.0e-237 827.8 671 59.6
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 1.3e-237 827.4 671 60.4
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 3.9e-237 825.9 683 60.9
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 5.1e-237 825.5 665 59.7
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 2.5e-236 823.2 665 58.6
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 3.6e-235 819.3 654 60.7
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 3.1e-234 816.2 649 59.8
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 1.2e-233 814.3 655 60.3
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 4.4e-233 812.4 828 52.2
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 4.4e-233 812.4 652 60.4
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 1.2e-230 804.3 665 58.6
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.1e-230 803.5 670 57.8
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 3.5e-230 802.7 671 58.1
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 2.3e-229 800.0 661 58.2
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 3.6e-227 792.7 652 57.5
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.1e-226 791.2 646 57.3
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 3.1e-226 789.6 652 57.1
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 5.2e-226 788.9 691 58.3
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.2e-225 787.7 663 58.2
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 1.5e-225 787.3 681 55.4
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 7.6e-225 785.0 572 66.6
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 1.4e-223 780.8 659 58.4
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 7.1e-223 778.5 646 56.8
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.0e-221 774.6 646 56.2
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.3e-221 774.2 646 56.2
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.3e-221 774.2 651 57.6
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 8.7e-221 771.5 644 56.7
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.6e-219 767.3 682 54.8
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 2.8e-219 766.5 646 55.7
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 2.8e-219 766.5 646 55.7
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 1.1e-218 764.6 575 64.7
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.4e-218 764.2 666 54.4
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 2.4e-218 763.5 666 55.3
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 5.3e-218 762.3 646 55.4
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 2.6e-217 760.0 666 55.0
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.4e-217 759.6 703 55.0
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 4.2e-215 752.7 656 55.6
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.9e-212 743.8 645 55.5
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 2.1e-211 740.3 649 54.5
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 8.1e-211 738.4 662 54.7
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.4e-210 737.6 672 53.3
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 2.4e-210 736.9 670 54.3
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 4.0e-210 736.1 665 53.1
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 6.9e-210 735.3 672 53.0
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.4e-209 733.0 708 53.2
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.2e-206 724.5 650 53.1
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 1.2e-206 724.5 644 56.8
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.7e-206 723.4 650 53.2
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.1e-204 718.0 649 57.0
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 3.3e-204 716.5 684 52.0
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 9.6e-204 714.9 653 55.1
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 4.9e-200 702.6 664 53.0
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 4.9e-200 702.6 659 53.0
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 8.4e-200 701.8 643 53.5
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 1.4e-199 701.0 645 55.7
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 1.6e-198 697.6 682 53.4
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 3.0e-197 693.3 666 53.8
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 5.1e-197 692.6 576 57.1
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 5.1e-197 692.6 706 49.2
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 2.4e-194 683.7 516 65.1
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.1e-183 648.3 667 49.6
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 1.3e-179 634.8 596 55.9
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 1.0e-176 625.2 683 50.5
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.3e-176 624.8 665 47.2
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 4.7e-174 616.3 649 49.5
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 6.7e-165 585.9 513 55.2
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 1.7e-147 528.1 345 70.1
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.6e-145 521.5 527 49.5
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 7.0e-138 496.1 329 67.2
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 1.8e-133 481.5 379 61.5
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 7.8e-129 466.1 426 50.7
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 8.1e-118 429.5 297 66.0
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 4.4e-108 397.1 231 77.9
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 6.6e-104 383.3 370 53.2
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 1.9e-103 381.7 380 50.5
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 7.6e-100 369.8 406 45.1
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 1.2e-92 345.9 436 42.9
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 5.5e-90 337.0 567 34.6
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 1.8e-85 322.0 311 47.9
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 3.5e-81 307.8 559 34.3
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 3.0e-80 304.7 529 35.0
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 1.8e-72 278.9 307 49.8
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 2.1e-65 255.4 156 75.6
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 1.2e-60 239.6 156 69.2
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 3.3e-55 221.5 139 71.9
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 7.0e-53 213.8 219 49.3
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 4.5e-52 211.1 221 53.4
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 6.3e-46 190.7 129 66.7
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 2.4e-45 188.7 133 63.2
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 4.1e-45 188.0 229 44.1
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 5.0e-43 181.0 160 61.9
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.3e-40 172.2 382 29.1
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 1.3e-38 166.4 191 47.6
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 3.5e-36 158.3 99 72.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 3.5e-36 158.3 99 72.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 3.5e-36 158.3 99 72.7
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 2.8e-33 148.7 135 54.1
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 4.4e-23 114.8 254 34.6
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 1.1e-21 110.2 227 33.0
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 9.2e-21 107.1 149 41.6
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.9e-18 99.4 73 64.4
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.1e-17 95.9 141 42.6
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 8.0e-17 94.0 59 69.5
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 2.3e-16 92.4 229 29.3
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.3e-16 92.4 206 32.5
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 6.8e-16 90.9 165 37.0
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 2.7e-12 79.0 48 70.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 2.7e-12 79.0 48 70.8
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 1.5e-10 73.2 72 55.6


User provided reference genes

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