Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 0.0e+00 1199.9 619 100.0
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 1.6e-155 553.9 631 52.6
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 6.5e-154 548.5 637 51.2
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 1.2e-144 517.7 631 49.0
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 9.2e-140 501.5 629 47.5
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 5.9e-139 498.8 625 47.5
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 8.6e-138 495.0 633 48.8
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 1.1e-137 494.6 649 46.5
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 1.9e-137 493.8 634 48.4
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 1.2e-136 491.1 619 48.1
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 2.1e-136 490.3 631 48.7
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 1.5e-134 484.2 635 47.1
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 5.9e-131 472.2 622 46.9
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 2.3e-130 470.3 638 46.1
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 4.7e-128 462.6 648 44.9
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 8.0e-128 461.8 628 45.7
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 6.8e-127 458.8 613 46.2
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 1.5e-126 457.6 624 46.2
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 2.6e-126 456.8 636 44.7
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 9.8e-126 454.9 629 44.0
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 1.3e-125 454.5 633 45.0
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 1.9e-124 450.7 647 44.8
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 9.2e-124 448.4 637 43.6
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 2.0e-123 447.2 616 43.8
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 6.0e-123 445.7 631 43.3
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.3e-122 444.5 625 43.2
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 6.8e-119 432.2 605 43.5
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 4.9e-117 426.0 627 42.1
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 1.9e-116 424.1 641 42.3
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.7e-114 417.5 616 42.9
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 3.9e-114 416.4 622 42.4
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 5.1e-114 416.0 616 42.7
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 5.6e-113 412.5 637 42.5
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 4.7e-112 409.5 635 42.7
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 6.2e-112 409.1 664 40.2
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 1.8e-111 407.5 642 43.8
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 2.4e-111 407.1 647 42.3
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 4.0e-111 406.4 649 42.1
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 4.0e-111 406.4 641 42.9
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 1.7e-109 401.0 637 40.8
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 2.2e-109 400.6 632 41.6
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 4.9e-109 399.4 616 42.4
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 5.4e-108 396.0 643 41.2
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 3.5e-107 393.3 627 43.4
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 4.6e-107 392.9 650 41.8
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 3.9e-106 389.8 628 42.2
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 3.3e-105 386.7 653 41.0
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 1.1e-103 381.7 641 41.0
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 1.1e-103 381.7 629 41.0
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 5.2e-103 379.4 655 38.6
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 5.2e-103 379.4 629 40.9
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 5.2e-103 379.4 629 40.9
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 4.4e-102 376.3 661 38.9
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 6.4e-101 372.5 475 44.8
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 8.4e-101 372.1 582 41.1
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 1.2e-99 368.2 637 39.2
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 1.2e-99 368.2 655 39.2
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.3e-98 364.8 609 40.1
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 1.7e-98 364.4 628 39.6
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 3.0e-98 363.6 643 39.0
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 3.9e-98 363.2 583 40.7
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 1.9e-97 360.9 623 39.3
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 2.5e-97 360.5 598 38.6
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 3.3e-97 360.1 623 39.3
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 9.6e-97 358.6 669 38.4
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 1.6e-96 357.8 643 39.7
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 2.8e-96 357.1 639 39.0
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 4.8e-96 356.3 642 39.3
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 1.1e-95 355.1 537 41.7
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 2.4e-95 354.0 597 38.9
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 4.0e-95 353.2 629 39.3
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 4.0e-95 353.2 597 39.4
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 5.3e-95 352.8 624 39.7
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 9.0e-95 352.1 620 38.2
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 2.0e-94 350.9 571 40.5
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 1.3e-93 348.2 596 38.4
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 2.2e-93 347.4 640 37.0
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 2.9e-93 347.1 598 38.3
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 2.9e-93 347.1 596 38.4
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 2.9e-93 347.1 629 38.5
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 3.8e-93 346.7 549 39.7
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 6.4e-93 345.9 596 38.3
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 1.9e-92 344.4 502 43.4
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 1.9e-92 344.4 641 38.4
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 1.9e-92 344.4 579 39.0
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 7.1e-92 342.4 582 38.8
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 2.1e-91 340.9 595 38.2
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 2.7e-91 340.5 645 38.3
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 4.6e-91 339.7 592 39.4
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 2.3e-90 337.4 622 39.5
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 3.0e-90 337.0 592 38.7
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 3.0e-90 337.0 592 38.7
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.1e-89 335.1 624 38.6
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.1e-89 335.1 624 38.6
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 6.2e-88 329.3 626 36.9
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 8.1e-88 328.9 601 39.3
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 4.5e-86 323.2 644 36.8
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 4.5e-86 323.2 670 36.9
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 5.8e-86 322.8 619 36.3
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 1.3e-85 321.6 643 35.0
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 3.8e-85 320.1 318 54.1
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 4.9e-85 319.7 632 39.4
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 6.4e-85 319.3 589 37.4
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 2.7e-83 313.9 633 35.7
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 1.3e-82 311.6 572 39.7
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 7.4e-81 305.8 405 43.5
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 1.3e-80 305.1 637 36.9
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 1.6e-80 304.7 506 40.1
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 2.1e-80 304.3 368 45.9
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 1.1e-79 302.0 573 37.2
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.4e-79 301.6 370 48.4
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 6.9e-79 299.3 654 35.9
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 2.9e-77 293.9 626 35.8
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 3.8e-77 293.5 431 42.2
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 2.5e-76 290.8 650 35.4
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 2.2e-72 277.7 356 46.1
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 2.4e-71 274.2 666 34.8
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 6.9e-71 272.7 286 51.7
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 9.1e-63 245.7 415 38.6
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 6.7e-58 229.6 527 32.6
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 1.5e-57 228.4 563 33.0
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 2.8e-56 224.2 424 38.0
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 3.7e-56 223.8 526 32.1
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 4.1e-55 220.3 450 36.2
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 3.4e-54 217.2 350 43.7
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 1.7e-53 214.9 575 34.8
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 3.2e-52 210.7 409 36.4
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 3.2e-52 210.7 409 36.4
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.2e-51 208.8 298 44.3
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 7.4e-49 199.5 275 44.0
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.6e-46 191.0 474 31.6
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 2.9e-45 187.6 191 48.7
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 8.5e-45 186.0 194 53.6
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 5.5e-44 183.3 192 50.5
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 4.7e-43 180.3 380 36.6
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 7.0e-39 166.4 336 34.8
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 1.9e-36 158.3 262 41.6
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 4.2e-36 157.1 290 38.3
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 3.6e-35 154.1 486 30.5
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 5.7e-33 146.7 146 54.1
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 3.7e-32 144.1 298 36.6
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 8.3e-32 142.9 493 29.8
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 3.5e-30 137.5 160 48.8
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 4.2e-28 130.6 122 60.7
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 5.4e-23 113.6 201 36.8
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 4.5e-22 110.5 181 42.0
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 7.8e-22 109.8 190 37.9
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 8.0e-19 99.8 177 39.0
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.4e-18 99.0 288 33.7
Ciclev10030203m.g Citrus clementina HOM05D003594 ORTHO05D026973 4.0e-18 97.4 115 52.2
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 4.1e-15 87.4 75 58.7
QL04p046243 Quercus lobata HOM05D003594 ORTHO05D026973 3.9e-13 80.9 95 50.5
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 2.8e-11 74.7 79 45.6
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 4.7e-11 73.9 62 51.6
Haze_02504 Corylus avellana HOM05D003594 ORTHO05D026973 6.2e-11 73.6 95 48.4
CDE02G4417 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 3.2e-07 61.2 62 54.8
MCO15G512 Micromonas commoda HOM05D003594 ORTHO05D004268 1.2e-06 59.3 454 22.9
TPR.G23930 Trifolium pratense HOM05D003594 ORTHO05D004268 1.6e-06 58.9 268 26.9
Prupe.6G159300 Prunus persica HOM05D003594 ORTHO05D004268 7.8e-06 56.6 197 25.9


User provided reference genes

Program Settings