Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 4.6e-100 367.9 180 100.0
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 9.7e-58 227.3 183 62.3
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.0e-54 217.2 182 60.4
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 4.7e-52 208.4 180 59.4
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 2.0e-47 193.0 181 55.8
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 2.6e-47 192.6 182 54.9
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 2.6e-47 192.6 182 51.6
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 4.5e-47 191.8 180 56.7
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 4.5e-47 191.8 180 56.7
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.2e-46 189.5 180 52.8
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 1.9e-45 186.4 183 55.7
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 3.2e-45 185.7 185 52.4
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 5.5e-45 184.9 180 51.1
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 7.2e-45 184.5 181 53.0
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 7.2e-45 184.5 183 51.9
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 9.4e-45 184.1 180 51.1
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 1.2e-44 183.7 180 51.7
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 2.1e-44 183.0 160 61.9
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 2.7e-44 182.6 183 49.7
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 6.1e-44 181.4 183 48.6
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 1.4e-43 180.3 182 51.6
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 1.8e-43 179.9 179 51.4
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.3e-43 179.5 183 51.4
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 5.2e-43 178.3 182 48.9
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 5.2e-43 178.3 179 51.4
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 8.8e-43 177.6 180 51.1
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.2e-42 177.2 180 51.7
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 1.5e-42 176.8 179 52.0
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 2.0e-42 176.4 177 51.4
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 5.7e-42 174.9 224 45.5
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 7.5e-42 174.5 177 49.2
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 9.7e-42 174.1 177 52.5
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 9.7e-42 174.1 177 49.2
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 1.3e-41 173.7 185 49.7
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.7e-41 173.3 178 49.4
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 2.2e-41 172.9 177 48.6
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 4.8e-41 171.8 177 49.7
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 6.3e-41 171.4 182 47.3
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 1.1e-40 170.6 180 46.1
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.1e-40 170.6 182 49.5
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.4e-40 170.2 182 49.5
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 2.4e-40 169.5 182 48.4
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.1e-40 169.1 177 46.3
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 4.1e-40 168.7 178 49.4
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 4.1e-40 168.7 181 47.5
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 5.3e-40 168.3 178 47.8
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 7.0e-40 167.9 183 47.0
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 7.0e-40 167.9 182 49.5
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 7.0e-40 167.9 178 47.8
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 9.1e-40 167.5 182 47.8
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.2e-39 167.2 182 48.4
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 2.7e-39 166.0 166 50.6
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 4.5e-39 165.2 181 48.1
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 5.9e-39 164.9 172 48.8
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 5.9e-39 164.9 180 50.0
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.9e-39 164.9 175 48.0
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 5.9e-39 164.9 179 45.8
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 7.7e-39 164.5 177 48.6
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 1.7e-38 163.3 180 46.1
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.9e-38 162.5 197 45.7
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 2.9e-38 162.5 197 45.7
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 2.9e-38 162.5 175 49.1
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 2.9e-38 162.5 189 47.6
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.8e-38 162.2 197 45.7
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.0e-38 161.8 175 46.9
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 6.5e-38 161.4 175 45.7
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 8.5e-38 161.0 189 46.6
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 8.5e-38 161.0 190 46.8
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 8.5e-38 161.0 189 46.6
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 1.1e-37 160.6 180 44.4
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.5e-37 160.2 175 47.4
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 2.5e-37 159.5 175 46.3
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 3.2e-37 159.1 182 44.5
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 5.5e-37 158.3 189 46.6
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 7.2e-37 157.9 178 46.6
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 7.2e-37 157.9 189 46.6
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 9.4e-37 157.5 176 44.9
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 9.4e-37 157.5 174 47.1
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 9.4e-37 157.5 180 48.3
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 1.6e-36 156.8 170 45.9
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 1.6e-36 156.8 184 45.7
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 2.1e-36 156.4 180 45.0
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 2.7e-36 156.0 185 45.4
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 4.7e-36 155.2 184 42.9
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 6.1e-36 154.8 182 44.0
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 1.0e-35 154.1 178 49.4
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 4.4e-34 148.7 185 44.9
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 7.5e-34 147.9 181 43.6
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 4.8e-33 145.2 177 42.9
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 1.4e-32 143.7 180 40.0
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 2.4e-32 142.9 181 42.0
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 3.1e-32 142.5 178 43.3
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.0e-31 139.8 181 38.7
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 3.5e-31 139.0 178 42.1
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 3.5e-31 139.0 177 40.7
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 4.5e-31 138.7 179 42.5
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 5.9e-31 138.3 178 41.0
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 9.5e-29 131.0 174 40.2
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 1.2e-28 130.6 181 39.2
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 1.6e-28 130.2 177 42.4
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 4.7e-28 128.6 178 39.3
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 6.1e-28 128.3 181 35.4
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.8e-27 126.7 178 38.2
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 1.8e-27 126.7 177 36.2
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.3e-27 126.3 181 34.3
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 3.0e-27 125.9 181 38.1
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 1.2e-26 124.0 179 41.9
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.5e-26 123.6 182 36.8
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.6e-26 122.9 182 35.7
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 3.4e-26 122.5 176 43.8
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 2.8e-25 119.4 182 34.6
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 2.8e-25 119.4 185 37.3
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 2.8e-25 119.4 177 37.9
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 4.9e-25 118.6 181 33.1
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 8.3e-25 117.9 183 35.5
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 1.8e-24 116.7 182 34.1
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 2.4e-24 116.3 144 39.6
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 2.4e-24 116.3 183 32.2
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 3.1e-24 115.9 99 58.6
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 3.5e-23 112.5 185 36.2
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 7.8e-23 111.3 185 34.6
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.3e-22 110.5 181 32.0
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 2.3e-22 109.8 172 32.6
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 2.9e-22 109.4 185 35.7
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 2.9e-22 109.4 177 33.9
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 6.6e-22 108.2 182 31.9
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.1e-21 107.5 185 34.6
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 1.1e-21 107.5 187 36.4
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.5e-21 107.1 185 34.1
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 2.5e-21 106.3 181 32.6
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 4.3e-21 105.5 185 33.5
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 4.3e-21 105.5 180 32.8
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 7.3e-21 104.8 125 44.8
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 1.6e-20 103.6 183 29.0
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 1.6e-20 103.6 183 29.0
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 2.1e-20 103.2 183 29.0
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 8.9e-19 97.8 186 32.3
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 1.2e-18 97.4 193 33.7
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 1.5e-18 97.1 187 33.7
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 2.0e-18 96.7 188 33.5
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 2.0e-18 96.7 87 54.0
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 9.8e-18 94.4 188 33.0
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 8.3e-17 91.3 150 37.3
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.7e-15 86.3 137 35.0
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.7e-07 59.7 96 33.3


User provided reference genes

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