Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1008 Acer truncatum HOM05D005062 ORTHO05D006410 1.3e-222 776.2 411 100.0
PGR044G2170 Punica granatum HOM05D005062 ORTHO05D006410 2.7e-164 582.4 422 74.9
Duzib106G1045 Durio zibethinus HOM05D005062 ORTHO05D006410 1.8e-163 579.7 413 74.8
Cpa.g.sc183.10 Carica papaya HOM05D005062 ORTHO05D006410 1.3e-161 573.5 421 73.6
Cfa010314 Carpinus fangiana HOM05D005062 ORTHO05D006410 5.3e-160 568.2 411 74.2
CiPaw.13G040200 Carya illinoinensis HOM05D005062 ORTHO05D006410 4.5e-159 565.1 419 72.8
MD02G1255900 Malus domestica HOM05D005062 ORTHO05D006410 4.5e-159 565.1 422 72.7
QL04p046667 Quercus lobata HOM05D005062 ORTHO05D006410 5.0e-158 561.6 445 68.3
Eucgr.J00992 Eucalyptus grandis HOM05D005062 ORTHO05D006410 2.5e-157 559.3 419 73.3
RcHm_v2.0_Chr1g0332571 Rosa chinensis HOM05D005062 ORTHO05D006410 2.8e-153 545.8 426 70.9
Gohir.A12G092722 Gossypium hirsutum HOM05D005062 ORTHO05D006410 4.8e-153 545.0 411 70.8
Gorai.008G099000 Gossypium raimondii HOM05D005062 ORTHO05D006410 6.3e-153 544.7 414 71.0
Manes.10G058650 Manihot esculenta HOM05D005062 ORTHO05D006410 1.1e-152 543.9 417 70.0
Potri.008G021600 Populus trichocarpa HOM05D005062 ORTHO05D006410 2.0e-151 539.7 418 69.4
Dinv11848 Davidia involucrata HOM05D005062 ORTHO05D006410 2.6e-151 539.3 362 79.3
Sabra08G0014600 Salix brachista HOM05D005062 ORTHO05D006410 2.9e-150 535.8 418 70.6
FvH4_7g05590 Fragaria vesca HOM05D005062 ORTHO05D006410 1.6e-148 530.0 413 71.7
FAN01G3081 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.6e-148 530.0 413 71.7
FAN10G1073 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.8e-147 526.6 413 71.4
CSS0050380 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 8.8e-147 524.2 412 70.4
Oeu026579.1 Olea europaea HOM05D005062 ORTHO05D006410 1.1e-144 517.3 433 67.7
CsaV3_2G034960 Cucumis sativus L. HOM05D005062 ORTHO05D006410 6.9e-144 514.6 420 65.5
TAR623G1543 Trochodendron aralioides HOM05D005062 ORTHO05D006410 2.6e-143 512.7 415 69.4
GSVIVG01011284001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.3e-142 510.4 452 66.4
THA.LOC104824209 Tarenaya hassleriana HOM05D005062 ORTHO05D006410 1.1e-141 507.3 410 67.1
Nn2g14130 Nelumbo nucifera HOM05D005062 ORTHO05D006410 1.9e-141 506.5 428 65.7
FAN23G1954 Fragaria x ananassa HOM05D005062 ORTHO05D006410 4.2e-141 505.4 375 73.9
Glyma.10G111800 Glycine max HOM05D005062 ORTHO05D006410 1.0e-139 500.7 409 67.0
CSS0021342 Camellia sinensis var. sinensis HOM05D005062 ORTHO05D006410 1.8e-139 500.0 422 67.8
FAN23G1474 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.8e-139 500.0 347 78.1
FAN06G1220 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.0e-139 499.2 387 72.1
Medtr1g050462 Medicago truncatula HOM05D005062 ORTHO05D006410 1.1e-138 497.3 424 64.6
DCAR_006341 Daucus carota HOM05D005062 ORTHO05D006410 2.0e-138 496.5 414 65.0
Migut.F01613 Erythranthe guttata HOM05D005062 ORTHO05D006410 2.6e-138 496.1 377 72.9
Phvul.007G247700 Phaseolus vulgaris HOM05D005062 ORTHO05D006410 3.3e-138 495.7 409 67.5
Lj5g0026270 Lotus japonicus HOM05D005062 ORTHO05D006410 3.7e-137 492.3 421 63.9
Ca_12731_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 8.2e-137 491.1 426 62.9
Lalb_Chr19g0129181 Lupinus albus HOM05D005062 ORTHO05D006410 3.1e-136 489.2 429 63.6
Actinidia18593 Actinidia chinensis HOM05D000444 ORTHO05D000489 4.1e-136 488.8 426 65.3
HanXRQChr08g0217771 Helianthus annuus HOM05D005062 ORTHO05D006410 7.0e-136 488.0 435 63.2
ECA233G2289 Erigeron canadensis HOM05D005062 ORTHO05D006410 1.2e-135 487.3 427 64.6
Aqoxy2G01214 Aquilegia oxysepala HOM05D005062 ORTHO05D006410 1.3e-134 483.8 424 64.6
FAN23G2695 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.8e-134 482.3 476 60.9
CAN.G54.5 Capsicum annuum HOM05D005062 ORTHO05D006410 4.2e-133 478.8 410 64.9
Nitab4.5_0010225g0010 Nicotiana tabacum HOM05D005062 ORTHO05D006410 9.4e-133 477.6 420 63.3
SalBow6G6867 Salvia bowleyana HOM05D005062 ORTHO05D006410 1.2e-132 477.2 344 73.3
Solyc07g014740.3 Solanum lycopersicum HOM05D005062 ORTHO05D006410 1.2e-132 477.2 417 62.8
MSTRG.8110 Avicennia marina HOM05D005062 ORTHO05D006410 8.0e-132 474.6 424 63.9
AT3G56160 Arabidopsis thaliana HOM05D005062 ORTHO05D006410 1.1e-130 470.7 384 66.1
Rhsim03G0099700 Rhododendron simsii HOM05D005062 ORTHO05D006410 1.5e-130 470.3 495 57.6
Lsat_1_v5_gn_8_23960 Lactuca sativa HOM05D005062 ORTHO05D006410 2.6e-130 469.5 427 61.4
Peaxi162Scf00235g10011 Petunia axillaris HOM05D005062 ORTHO05D006410 1.7e-129 466.8 430 63.0
FAN03G1004 Fragaria x ananassa HOM05D005062 ORTHO05D006410 3.7e-129 465.7 469 60.6
BraA09t40366Z Brassica rapa HOM05D005062 ORTHO05D006410 1.1e-128 464.2 372 67.7
Sp5g06340 Schrenkiella parvula HOM05D005062 ORTHO05D006410 2.4e-128 463.0 413 63.2
A09p49130 Brassica napus HOM05D002435 ORTHO05D002550 3.1e-128 462.6 370 67.8
AL5G37480 Arabidopsis lyrata HOM05D005062 ORTHO05D006410 5.3e-128 461.8 398 63.3
arahy.Tifrunner.gnm1.ann1.ZAGE2X Arachis hypogaea HOM05D005062 ORTHO05D006410 5.3e-128 461.8 366 67.5
BcaC07g39930 Brassica carinata HOM05D002435 ORTHO05D002550 7.0e-128 461.5 387 65.6
BolC8t50765H Brassica oleracea HOM05D002435 ORTHO05D002550 7.0e-128 461.5 387 65.6
CDE06G2329 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 5.9e-127 458.4 341 70.1
AUR62034504 Chenopodium quinoa HOM05D005062 ORTHO05D006410 1.0e-126 457.6 369 64.8
arahy.Tifrunner.gnm1.ann1.BZ57JC Arachis hypogaea HOM05D005062 ORTHO05D006410 3.8e-126 455.7 370 65.9
Cc02_g09770 Coffea canephora HOM05D005062 ORTHO05D006410 2.5e-125 453.0 327 73.1
BcaB01g00026 Brassica carinata HOM05D002435 ORTHO05D002550 5.5e-125 451.8 362 68.0
C08p31440 Brassica napus HOM05D002435 ORTHO05D002550 5.5e-125 451.8 362 68.5
Lsat_1_v5_gn_2_104621 Lactuca sativa HOM05D005062 ORTHO05D006410 5.5e-125 451.8 436 59.6
ATR0081G026 Amborella trichopoda HOM05D005062 ORTHO05D006410 1.4e-123 447.2 424 58.5
ECA238G3155 Erigeron canadensis HOM05D005062 ORTHO05D006410 1.7e-121 440.3 390 61.3
HanXRQChr11g0342201 Helianthus annuus HOM05D005062 ORTHO05D006410 2.8e-121 439.5 427 57.1
Thecc.10G106400 Theobroma cacao HOM05D005062 ORTHO05D006410 9.1e-120 434.5 314 71.7
HanXRQChr08g0217571 Helianthus annuus HOM05D005062 ORTHO05D006410 5.0e-118 428.7 374 60.7
GSVIVG01036146001 Vitis vinifera HOM05D005062 ORTHO05D006410 1.1e-117 427.6 394 60.7
Ciclev10032297m.g Citrus clementina HOM05D005062 ORTHO05D006410 7.2e-117 424.9 281 80.1
Thhalv10006005m.g Eutrema salsugineum HOM05D005062 ORTHO05D006410 9.4e-117 424.5 406 62.3
CiPaw.14G101300 Carya illinoinensis HOM05D005062 ORTHO05D006410 6.8e-115 418.3 399 58.1
Sed0016949 Sechium edule HOM05D005062 ORTHO05D006410 3.4e-114 416.0 356 64.3
HPP92_007815 Vanilla planifolia HOM05D005062 ORTHO05D006410 4.1e-112 409.1 430 55.6
TPR.G10638 Trifolium pratense HOM05D005062 ORTHO05D006410 7.0e-112 408.3 288 73.6
Os02g0531200 Oryza sativa ssp. japonica HOM05D005062 ORTHO05D006410 4.5e-111 405.6 329 63.5
Sopen07g005620 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-109 400.6 368 60.6
Eucgr.B03869 Eucalyptus grandis HOM05D005062 ORTHO05D006410 4.2e-109 399.1 341 61.3
Gohir.D12G091480 Gossypium hirsutum HOM05D005062 ORTHO05D006410 1.2e-108 397.5 316 68.4
EL10As25g24233 Beta vulgaris HOM05D005062 ORTHO05D006410 2.3e-107 393.3 486 49.6
PGR102G2753 Punica granatum HOM05D005062 ORTHO05D006410 1.1e-104 384.4 331 61.9
Sc12g0004460 Simmondsia chinensis HOM05D005062 ORTHO05D006410 1.5e-101 374.0 386 56.2
Ah.09g232820 Amaranthus hybridus HOM05D005062 ORTHO05D006410 3.3e-101 372.9 354 58.2
VMungo0720G3089 Vigna mungo HOM05D000444 ORTHO05D000489 1.4e-96 357.5 514 46.7
Ah.08g215800 Amaranthus hybridus HOM05D005062 ORTHO05D006410 4.1e-96 355.9 393 53.4
Hund06778 Selenicereus undatus HOM05D005062 ORTHO05D006410 4.7e-92 342.4 401 51.6
CiPaw.14G101100 Carya illinoinensis HOM05D005062 ORTHO05D006410 6.8e-91 338.6 408 52.2
Prupe.2G079400 Prunus persica HOM05D005062 ORTHO05D006410 4.9e-89 332.4 276 67.0
unitig_578.g16343 Utricularia gibba HOM05D005062 ORTHO05D006410 4.6e-79 299.3 342 53.5
MD02G1256100 Malus domestica HOM05D005062 ORTHO05D006410 4.3e-77 292.7 257 63.4
Sc20g0001180 Simmondsia chinensis HOM05D003607 ORTHO05D004049 9.6e-77 291.6 218 71.6
SGA_v2.0_scaffold13G06459 Striga asiatica HOM05D005062 ORTHO05D006410 1.1e-75 288.1 453 44.6
Zm00001eb242730 Zea mays HOM05D005062 ORTHO05D006410 1.4e-75 287.7 219 65.8
CARHR166310 Cardamine hirsuta HOM05D005062 ORTHO05D006410 2.0e-74 283.9 223 68.6
AUR62009772 Chenopodium quinoa HOM05D005062 ORTHO05D006410 7.6e-74 282.0 422 44.3
Zm00001eb296300 Zea mays HOM05D005062 ORTHO05D006410 6.0e-71 272.3 255 58.0
Lj3A928T57 Lonicera japonica HOM05D005062 ORTHO05D006410 7.8e-71 271.9 242 65.3
Carub.0005s2291 Capsella rubella HOM05D005062 ORTHO05D006410 1.7e-70 270.8 216 67.1
Haze_02484 Corylus avellana HOM05D005062 ORTHO05D006410 5.8e-66 255.8 241 62.7
EL10Ac7g15813 Beta vulgaris HOM05D005062 ORTHO05D006410 7.6e-66 255.4 415 40.2
Mapoly0046s0115 Marchantia polymorpha HOM05D005062 ORTHO05D006410 3.5e-63 246.5 386 38.3
AagrBONN_evm.TU.Sc2ySwM_117.1142 Anthoceros agrestis HOM05D005062 ORTHO05D006410 4.8e-60 236.1 248 52.4
Duzib128G0173 Durio zibethinus HOM05D005062 ORTHO05D006410 2.2e-57 227.3 235 59.1
SMO347G0520 Selaginella moellendorffii HOM05D005062 ORTHO05D006410 8.4e-57 225.3 327 43.7
Haze_02485 Corylus avellana HOM05D005062 ORTHO05D006410 1.3e-54 218.0 183 61.2
Haze_23392 Corylus avellana HOM05D005062 ORTHO05D006410 3.9e-54 216.5 235 56.6
AUR62039218 Chenopodium quinoa HOM05D005062 ORTHO05D006410 5.6e-53 212.6 335 40.3
A02p12720 Brassica napus HOM05D005062 ORTHO05D006410 1.0e-49 201.8 233 56.7
Psat6g129720 Pisum sativum HOM05D005062 ORTHO05D006410 1.3e-46 191.4 151 67.5
Pp3c3_30210 Physcomitrium patens HOM05D005062 ORTHO05D006410 3.0e-46 190.3 195 53.3
Cre09.g395700 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 1.6e-44 184.5 369 36.9
MD02G1256200 Malus domestica HOM05D005062 ORTHO05D006410 6.3e-44 182.6 125 73.6
PRCOL_00003606 Prasinoderma coloniale HOM05D005062 ORTHO05D006410 1.3e-41 174.9 331 36.9
CBR_g48207 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-38 164.5 201 42.8
QL01p012456 Quercus lobata HOM05D005062 ORTHO05D006410 3.0e-38 163.7 131 63.4
COL.COLO4_24555 Corchorus olitorius HOM05D005062 ORTHO05D006410 1.3e-36 158.3 101 82.2
Cre09.g393250 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 2.0e-34 151.0 347 34.0
MCO15G192 Micromonas commoda HOM05D005062 ORTHO05D006410 2.0e-34 151.0 338 30.2
Ciclev10033893m.g Citrus clementina HOM05D005062 ORTHO05D006410 2.9e-33 147.1 103 77.7
Cfa010034 Carpinus fangiana HOM05D005062 ORTHO05D006410 1.4e-32 144.8 120 62.5
COL.COLO4_24556 Corchorus olitorius HOM05D005062 ORTHO05D006410 1.9e-32 144.4 84 82.1
Psat6g129760 Pisum sativum HOM05D005062 ORTHO05D006410 7.2e-32 142.5 151 51.0
FAN06G0036 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.6e-31 141.4 124 66.9
Lj3C928T13 Lonicera japonica HOM05D005062 ORTHO05D006410 3.6e-31 140.2 172 48.3
QL01p012462 Quercus lobata HOM05D005062 ORTHO05D006410 4.6e-31 139.8 171 48.0
FAN06G3794 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.1e-30 136.3 116 67.2
Ca_00262_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 4.3e-29 133.3 169 43.2
Cre02.g147450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 4.8e-28 129.8 380 31.8
ClCG02G008710 Citrullus lanatus HOM05D005062 ORTHO05D006410 4.8e-28 129.8 152 45.4
FvH4_7g05870 Fragaria vesca HOM05D005062 ORTHO05D006410 8.2e-28 129.0 117 65.8
FAN01G2457 Fragaria x ananassa HOM05D005062 ORTHO05D006410 1.1e-27 128.6 82 86.6
Cre12.g521950 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 2.4e-27 127.5 334 29.3
Cre06.g250450 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D006410 4.1e-27 126.7 358 26.3
Hma1.2p1_1068F.1_g253985 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 2.1e-23 114.4 91 65.9
Hma1.2p1_0165F.1_g073310 Hydrangea macrophylla HOM05D005062 ORTHO05D006410 1.4e-22 111.7 65 83.1
GSVIVG01034679001 Vitis vinifera HOM05D005062 ORTHO05D006410 2.3e-22 110.9 68 88.2
BraA02t06329Z Brassica rapa HOM05D005062 ORTHO05D006410 2.8e-20 104.0 80 72.5
Haze_23393 Corylus avellana HOM05D005062 ORTHO05D006410 2.4e-19 100.9 74 64.9
SEGI_26426 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 4.5e-18 96.7 73 63.0
RcHm_v2.0_Chr1g0332551 Rosa chinensis HOM05D005062 ORTHO05D006410 1.3e-17 95.1 59 81.4
FAN01G2288 Fragaria x ananassa HOM05D005062 ORTHO05D006410 5.2e-14 83.2 55 78.2
Dinv42565 Davidia involucrata HOM05D005062 ORTHO05D006410 6.7e-14 82.8 106 48.1
RcHm_v2.0_Chr1g0332541 Rosa chinensis HOM05D005062 ORTHO05D006410 8.8e-14 82.4 58 69.0
SEGI_01082 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 3.3e-13 80.5 59 71.2
Hund18750 Selenicereus undatus HOM05D005062 ORTHO05D006410 1.7e-12 78.2 77 45.5
MCO11G881 Micromonas commoda HOM05D005062 ORTHO05D028578 2.4e-11 74.3 353 25.2
Ca_12794_v3 Cicer arietinum L. HOM05D005062 ORTHO05D006410 1.0e-09 68.9 54 66.7
Cre02.g095086 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D028578 1.3e-09 68.6 235 24.7
SEGI_13629 Sequoiadendron giganteum HOM05D005062 ORTHO05D006410 1.3e-09 68.6 67 52.2
FAN21G2606 Fragaria x ananassa HOM05D000943 ORTHO05D008314 1.5e-08 65.1 194 29.4
RcHm_v2.0_Chr5g0029301 Rosa chinensis HOM05D000943 ORTHO05D008314 1.9e-08 64.7 360 25.0
FAN11G0107 Fragaria x ananassa HOM05D000943 ORTHO05D008314 2.5e-08 64.3 194 29.4
FAN16G1964 Fragaria x ananassa HOM05D000943 ORTHO05D008314 2.5e-08 64.3 194 29.4
DCAR_017587 Daucus carota HOM05D000943 ORTHO05D008314 3.2e-08 63.9 410 23.9
MELO3C034937.2 Cucumis melo HOM05D005062 ORTHO05D006410 4.2e-08 63.5 68 55.9
Cre02.g095085 Chlamydomonas reinhardtii HOM05D005062 ORTHO05D028578 5.5e-08 63.2 225 24.0
Gorai.002G045800 Gossypium raimondii HOM05D000943 ORTHO05D008314 5.5e-08 63.2 334 28.1
AUR62019668 Chenopodium quinoa HOM05D000943 ORTHO05D008314 7.2e-08 62.8 223 26.9
FAN25G0219 Fragaria x ananassa HOM05D000943 ORTHO05D008314 7.2e-08 62.8 322 26.7
ClCG11G017120 Citrullus lanatus HOM05D000943 ORTHO05D008314 1.2e-07 62.0 354 22.9
CsaV3_4G032780 Cucumis sativus L. HOM05D000943 ORTHO05D008314 2.1e-07 61.2 294 24.5
Gohir.D01G037600 Gossypium hirsutum HOM05D000943 ORTHO05D008314 2.1e-07 61.2 334 27.8
CDE08G0076 Ceratophyllum demersum HOM05D005062 ORTHO05D006410 2.7e-07 60.8 35 80.0
MD03G1251200 Malus domestica HOM05D000943 ORTHO05D008314 3.6e-07 60.5 324 23.8
Cpa.g.sc682.5 Carica papaya HOM05D000943 ORTHO05D008314 4.7e-07 60.1 333 23.4
Thecc.07G135000 Theobroma cacao HOM05D000943 ORTHO05D008314 4.7e-07 60.1 381 23.9
MELO3C025675.2 Cucumis melo HOM05D000943 ORTHO05D008314 1.0e-06 58.9 294 23.8
MD11G1271200 Malus domestica HOM05D000943 ORTHO05D008314 1.0e-06 58.9 343 24.2
Potri.011G103200 Populus trichocarpa HOM05D000943 ORTHO05D008314 1.4e-06 58.5 360 23.3
AUR62013941 Chenopodium quinoa HOM05D000943 ORTHO05D008314 1.8e-06 58.2 200 27.5
Migut.M00688 Erythranthe guttata HOM05D000943 ORTHO05D008314 1.8e-06 58.2 336 24.1
TWI38G0474 Tripterygium wilfordii HOM05D000943 ORTHO05D008314 1.8e-06 58.2 325 23.4
vmacro09420 Vaccinium macrocarpon HOM05D000943 ORTHO05D008314 1.8e-06 58.2 327 24.8
Ah.04g163940 Amaranthus hybridus HOM05D000943 ORTHO05D008314 3.0e-06 57.4 328 23.8
PGSC0003DMG400019027 Solanum tuberosum HOM05D000943 ORTHO05D008314 3.0e-06 57.4 258 26.0
COL.COLO4_03605 Corchorus olitorius HOM05D000943 ORTHO05D008314 5.2e-06 56.6 332 24.7
Dinv26700 Davidia involucrata HOM05D000943 ORTHO05D006658 5.2e-06 56.6 325 25.8


User provided reference genes

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