Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.653 Acer truncatum HOM05D000856 ORTHO05D019405 3.4e-77 291.6 147 100.0
Atru.chr5.2188 Acer truncatum HOM05D000856 ORTHO05D019405 8.5e-36 154.1 87 92.0
Atru.chr3.1616 Acer truncatum HOM05D000856 ORTHO05D019405 4.0e-17 92.0 51 90.2
Atru.chr9.58 Acer truncatum HOM05D000058 ORTHO05D052710 6.8e-17 91.3 51 92.2
Atru.chr11.175 Acer truncatum HOM05D000856 ORTHO05D019405 2.5e-11 72.8 50 74.0
Atru.chr4.490 Acer truncatum HOM05D001825 ORTHO05D019405 1.6e-10 70.1 56 69.6
Atru.chr4.2232 Acer truncatum HOM05D000856 ORTHO05D001792 5.2e-09 65.1 34 91.2
Atru.chr9.346 Acer truncatum HOM05D001825 ORTHO05D019405 1.3e-07 60.5 48 72.9
MD13G1113900 Malus domestica HOM05D000967 ORTHO05D000796 1.3e-07 60.5 62 56.5
Ciclev10031526m.g Citrus clementina HOM05D000967 ORTHO05D000796 1.7e-07 60.1 63 52.4
PGR031G1239 Punica granatum HOM05D000856 ORTHO05D001792 1.7e-07 60.1 34 82.4
Migut.G00718 Erythranthe guttata HOM05D000856 ORTHO05D001792 2.2e-07 59.7 34 82.4
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 3.7e-07 58.9 34 79.4
MD16G1113100 Malus domestica HOM05D000967 ORTHO05D000796 4.9e-07 58.5 62 54.8
Potri.010G076900 Populus trichocarpa HOM05D000856 ORTHO05D001792 4.9e-07 58.5 34 82.4
MD16G1112800 Malus domestica HOM05D000967 ORTHO05D000796 6.4e-07 58.2 66 50.0
Eucgr.B03466 Eucalyptus grandis HOM05D000967 ORTHO05D000796 8.3e-07 57.8 87 43.7
GSVIVG01010336001 Vitis vinifera HOM05D000967 ORTHO05D000796 8.3e-07 57.8 63 50.8
Prupe.1G232600 Prunus persica HOM05D000967 ORTHO05D000796 1.1e-06 57.4 63 52.4
PGR102G0429 Punica granatum HOM05D000967 ORTHO05D000796 1.1e-06 57.4 62 54.8
Sabra10G0031900 Salix brachista HOM05D000856 ORTHO05D001792 1.1e-06 57.4 34 79.4
Ca_09119_v3 Cicer arietinum L. HOM05D000856 ORTHO05D001792 1.4e-06 57.0 34 79.4
Migut.G00435 Erythranthe guttata HOM05D000856 ORTHO05D001792 1.4e-06 57.0 34 85.3
Phvul.003G089200 Phaseolus vulgaris HOM05D000856 ORTHO05D001792 1.4e-06 57.0 34 79.4
SalBow2G0782 Salvia bowleyana HOM05D000856 ORTHO05D001792 1.4e-06 57.0 34 85.3
Aa31LG5G3590 Aethionema arabicum HOM05D000856 ORTHO05D001792 1.9e-06 56.6 34 76.5
Dinv10988 Davidia involucrata HOM05D000967 ORTHO05D000796 1.9e-06 56.6 62 51.6
FAN17G1603 Fragaria x ananassa HOM05D000967 ORTHO05D000796 1.9e-06 56.6 66 48.5
FAN22G0859 Fragaria x ananassa HOM05D000967 ORTHO05D000796 1.9e-06 56.6 66 48.5
RcHm_v2.0_Chr4g0431031 Rosa chinensis HOM05D000967 ORTHO05D000796 1.9e-06 56.6 66 48.5
AL1G13870 Arabidopsis lyrata HOM05D000856 ORTHO05D001792 2.4e-06 56.2 34 76.5
AL6G19910 Arabidopsis lyrata HOM05D000856 ORTHO05D001792 2.4e-06 56.2 34 76.5
Carub.0001s0346 Capsella rubella HOM05D000856 ORTHO05D001792 2.4e-06 56.2 34 76.5
Carub.0006s0808 Capsella rubella HOM05D000856 ORTHO05D001792 2.4e-06 56.2 34 76.5
CARHR003600 Cardamine hirsuta HOM05D000856 ORTHO05D001792 2.4e-06 56.2 34 76.5
CARHR203870 Cardamine hirsuta HOM05D000856 ORTHO05D001792 2.4e-06 56.2 34 76.5
Duzib248G0459 Durio zibethinus HOM05D000967 ORTHO05D000796 2.4e-06 56.2 63 49.2
Thhalv10009006m.g Eutrema salsugineum HOM05D000856 ORTHO05D001792 2.4e-06 56.2 34 76.5
Thhalv10014917m.g Eutrema salsugineum HOM05D000856 ORTHO05D001792 2.4e-06 56.2 34 76.5
FvH4_4g24190 Fragaria vesca HOM05D000967 ORTHO05D000796 2.4e-06 56.2 66 48.5
FAN07G0525 Fragaria x ananassa HOM05D000967 ORTHO05D000796 2.4e-06 56.2 66 47.0
FAN12G2154 Fragaria x ananassa HOM05D000967 ORTHO05D000796 2.4e-06 56.2 66 48.5
Gohir.A09G223000 Gossypium hirsutum HOM05D000856 ORTHO05D001792 2.4e-06 56.2 34 79.4
Sp1g03080 Schrenkiella parvula HOM05D000856 ORTHO05D001792 2.4e-06 56.2 34 76.5
CSS0039560 Camellia sinensis var. sinensis HOM05D000967 ORTHO05D000796 3.2e-06 55.8 62 50.0
CiPaw.01G190500 Carya illinoinensis HOM05D000856 ORTHO05D001792 3.2e-06 55.8 34 76.5
Potri.002G043200 Populus trichocarpa HOM05D000856 ORTHO05D001792 3.2e-06 55.8 34 76.5
Potri.005G219700 Populus trichocarpa HOM05D000856 ORTHO05D001792 3.2e-06 55.8 34 76.5
Sed0009894 Sechium edule HOM05D000856 ORTHO05D001792 3.2e-06 55.8 34 76.5
Sed0021483 Sechium edule HOM05D000856 ORTHO05D001792 3.2e-06 55.8 34 76.5
Actinidia25765 Actinidia chinensis HOM05D000967 ORTHO05D000796 4.1e-06 55.5 61 52.5
Cc11_g16660 Coffea canephora HOM05D000967 ORTHO05D000796 4.1e-06 55.5 62 50.0
Medtr1g070450 Medicago truncatula HOM05D000856 ORTHO05D001792 4.1e-06 55.5 34 76.5
Oeu035349.1 Olea europaea HOM05D000856 ORTHO05D001792 4.1e-06 55.5 34 82.4
VMungo0251G3619 Vigna mungo HOM05D000856 ORTHO05D001792 4.1e-06 55.5 34 76.5
VMungo1215G2154 Vigna mungo HOM05D000856 ORTHO05D001792 4.1e-06 55.5 34 76.5
AT1G04270 Arabidopsis thaliana HOM05D000856 ORTHO05D001792 5.4e-06 55.1 34 73.5
AT5G09510 Arabidopsis thaliana HOM05D000856 ORTHO05D001792 5.4e-06 55.1 34 73.5
BcaC05g24457 Brassica carinata HOM05D000856 ORTHO05D001792 5.4e-06 55.1 34 73.5
BcaC07g36923 Brassica carinata HOM05D000856 ORTHO05D001792 5.4e-06 55.1 34 73.5
BcaC07g42176 Brassica carinata HOM05D000856 ORTHO05D001792 5.4e-06 55.1 34 73.5
C05p02460 Brassica napus HOM05D000856 ORTHO05D001792 5.4e-06 55.1 34 73.5
C08p00980 Brassica napus HOM05D000856 ORTHO05D001792 5.4e-06 55.1 34 73.5
BolC5t29025H Brassica oleracea HOM05D000856 ORTHO05D001792 5.4e-06 55.1 34 73.5
BraA10t42536Z Brassica rapa HOM05D000856 ORTHO05D001792 5.4e-06 55.1 34 73.5
Psat6g057360 Pisum sativum HOM05D000856 ORTHO05D001792 5.4e-06 55.1 34 73.5
THA.LOC104826071 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 5.4e-06 55.1 34 73.5
Aa31LG1G20560 Aethionema arabicum HOM05D000856 ORTHO05D002253 7.0e-06 54.7 32 78.1
MD13G1113500 Malus domestica HOM05D000967 ORTHO05D000796 7.0e-06 54.7 65 49.2
SalBow8G4441 Salvia bowleyana HOM05D000967 ORTHO05D000796 7.0e-06 54.7 62 48.4
Sed0003467 Sechium edule HOM05D000856 ORTHO05D001792 7.0e-06 54.7 34 73.5
arahy.Tifrunner.gnm1.ann1.1H403S Arachis hypogaea HOM05D000856 ORTHO05D001792 9.2e-06 54.3 34 82.4
arahy.Tifrunner.gnm1.ann1.882I6B Arachis hypogaea HOM05D000856 ORTHO05D001792 9.2e-06 54.3 34 82.4
COL.COLO4_15787 Corchorus olitorius HOM05D000856 ORTHO05D001792 9.2e-06 54.3 34 76.5
Duzib212G0429 Durio zibethinus HOM05D000856 ORTHO05D001792 9.2e-06 54.3 34 76.5
Duzib251G0701 Durio zibethinus HOM05D000967 ORTHO05D000796 9.2e-06 54.3 100 39.0
Gohir.A02G035600 Gossypium hirsutum HOM05D000856 ORTHO05D001792 9.2e-06 54.3 34 76.5
Gohir.A10G114000 Gossypium hirsutum HOM05D000856 ORTHO05D001792 9.2e-06 54.3 34 76.5
Gohir.D02G042300 Gossypium hirsutum HOM05D000856 ORTHO05D001792 9.2e-06 54.3 34 76.5
Gorai.005G046800 Gossypium raimondii HOM05D000856 ORTHO05D001792 9.2e-06 54.3 34 76.5
Gorai.006G246500 Gossypium raimondii HOM05D000856 ORTHO05D001792 9.2e-06 54.3 34 76.5
Gorai.011G171000 Gossypium raimondii HOM05D000856 ORTHO05D001792 9.2e-06 54.3 34 76.5
PGR004G2424 Punica granatum HOM05D000856 ORTHO05D001792 9.2e-06 54.3 34 73.5
Sabra02G0035100 Salix brachista HOM05D000856 ORTHO05D001792 9.2e-06 54.3 34 73.5
TWI09G1075 Tripterygium wilfordii HOM05D000856 ORTHO05D001792 9.2e-06 54.3 34 76.5


User provided reference genes

Program Settings