Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.42 Acer truncatum HOM05D006753 ORTHO05D008521 5.2e-63 244.2 123 100.0
Ciclev10017207m.g Citrus clementina HOM05D006753 ORTHO05D008521 1.3e-42 176.4 123 75.6
CANSAT78G0938 Cannabis sativa HOM05D006753 ORTHO05D008521 9.9e-38 160.2 120 73.3
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 1.3e-37 159.8 126 70.6
Manes.04G161100 Manihot esculenta HOM05D006753 ORTHO05D008521 8.4e-37 157.1 129 69.0
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 2.4e-36 155.6 126 70.6
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 5.5e-36 154.5 134 65.7
RcHm_v2.0_Chr4g0447151 Rosa chinensis HOM05D006753 ORTHO05D008521 2.1e-35 152.5 119 70.6
Duzib052G0750 Durio zibethinus HOM05D006753 ORTHO05D008521 6.0e-35 151.0 126 68.3
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 6.0e-35 151.0 123 67.5
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 6.0e-35 151.0 127 71.7
Medtr1g115255 Medicago truncatula HOM05D006753 ORTHO05D008521 3.9e-34 148.3 124 65.3
MD13G1001300 Malus domestica HOM05D006753 ORTHO05D008521 6.7e-34 147.5 119 71.4
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 6.7e-34 147.5 124 67.7
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 8.7e-34 147.1 125 65.6
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 1.5e-33 146.4 129 64.3
FvH4_4g37311 Fragaria vesca HOM05D006753 ORTHO05D008521 1.5e-33 146.4 119 68.9
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.5e-33 146.4 119 68.1
QL01p000327 Quercus lobata HOM05D006753 ORTHO05D008521 1.5e-33 146.4 130 65.4
PGR044G1510 Punica granatum HOM05D006753 ORTHO05D008521 4.3e-33 144.8 117 69.2
MELO3C011766.2 Cucumis melo HOM05D006753 ORTHO05D008521 1.3e-32 143.3 119 66.4
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 1.3e-32 143.3 120 69.2
FAN07G1749 Fragaria x ananassa HOM05D006753 ORTHO05D008521 1.3e-32 143.3 119 67.2
CsaV3_5G029140 Cucumis sativus L. HOM05D006753 ORTHO05D008521 6.2e-32 141.0 118 61.9
Lalb_Chr02g0144111 Lupinus albus HOM05D006753 ORTHO05D008521 8.2e-32 140.6 122 61.5
VMungo0720G0065 Vigna mungo HOM05D006753 ORTHO05D008521 1.1e-31 140.2 123 65.0
Potri.008G003100 Populus trichocarpa HOM05D006753 ORTHO05D008521 1.8e-31 139.4 134 59.7
TAR629G2108 Trochodendron aralioides HOM05D006753 ORTHO05D008521 1.8e-31 139.4 125 64.0
MBI03_g11899_MAGBIO Magnolia biondii HOM05D006753 ORTHO05D008521 4.0e-31 138.3 122 62.3
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 6.9e-31 137.5 124 65.3
GSVIVG01034354001 Vitis vinifera HOM05D006753 ORTHO05D008521 6.9e-31 137.5 126 63.5
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 3.4e-30 135.2 129 59.7
Sabra08G0001000 Salix brachista HOM05D006753 ORTHO05D008521 3.4e-30 135.2 132 61.4
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 4.5e-30 134.8 123 63.4
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 5.8e-30 134.4 116 62.9
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 2.2e-29 132.5 116 62.9
Thhalv10002245m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 1.1e-28 130.2 128 61.7
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 1.1e-28 130.2 116 62.1
Sopen03g009600 Solanum pennellii HOM05D006753 ORTHO05D008521 1.1e-28 130.2 117 59.8
MSTRG.13663 Avicennia marina HOM05D006753 ORTHO05D008521 1.9e-28 129.4 117 62.4
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 4.2e-28 128.3 127 59.8
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 4.2e-28 128.3 118 61.9
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 5.5e-28 127.9 118 60.2
ClCG11G012760 Citrullus lanatus HOM05D006753 ORTHO05D008521 7.1e-28 127.5 122 57.4
Migut.E00658 Erythranthe guttata HOM05D006753 ORTHO05D008521 7.1e-28 127.5 118 60.2
Psat6g234480 Pisum sativum HOM05D006753 ORTHO05D008521 7.1e-28 127.5 124 58.1
ECA238G1815 Erigeron canadensis HOM05D006753 ORTHO05D008521 1.6e-27 126.3 124 60.5
Gohir.D12G135600 Gossypium hirsutum HOM05D006753 ORTHO05D008521 1.6e-27 126.3 123 58.5
CAN.G815.2 Capsicum annuum HOM05D006753 ORTHO05D008521 2.7e-27 125.6 118 57.6
Sc21g0003760 Simmondsia chinensis HOM05D006753 ORTHO05D008521 3.5e-27 125.2 120 64.2
Gohir.A12G132000 Gossypium hirsutum HOM05D006753 ORTHO05D008521 7.9e-27 124.0 122 58.2
Gorai.008G146800 Gossypium raimondii HOM05D006753 ORTHO05D008521 7.9e-27 124.0 123 57.7
Nitab4.5_0000075g0200 Nicotiana tabacum HOM05D006753 ORTHO05D008521 7.9e-27 124.0 124 58.1
AT3G52350 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 1.0e-26 123.6 120 59.2
PGSC0003DMG400018762 Solanum tuberosum HOM05D006753 ORTHO05D008521 1.0e-26 123.6 117 57.3
EL10Ac9g23017 Beta vulgaris HOM05D006753 ORTHO05D008521 1.3e-26 123.2 114 60.5
Sp6g34360 Schrenkiella parvula HOM05D006753 ORTHO05D008521 2.3e-26 122.5 127 59.1
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 5.1e-26 121.3 114 64.0
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 6.7e-26 120.9 118 60.2
Rhsim05G0152000 Rhododendron simsii HOM05D006753 ORTHO05D008521 1.5e-25 119.8 106 63.2
CDE05G2438 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 4.3e-25 118.2 124 56.5
ATR0124G001 Amborella trichopoda HOM05D006753 ORTHO05D008521 5.7e-25 117.9 124 57.3
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 7.4e-25 117.5 125 55.2
Carub.0005s1869 Capsella rubella HOM05D006753 ORTHO05D008521 9.7e-25 117.1 126 57.1
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 1.3e-24 116.7 116 56.9
Dinv25482 Davidia involucrata HOM05D006753 ORTHO05D008521 1.6e-24 116.3 124 55.6
CDE05G0871 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 2.2e-24 115.9 123 56.1
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 2.2e-24 115.9 116 54.3
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 1.1e-23 113.6 119 58.0
Nitab4.5_0008337g0010 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.8e-23 112.8 123 55.3
Aqoxy3G04333 Aquilegia oxysepala HOM05D006753 ORTHO05D008521 3.1e-23 112.1 105 57.1
Lj6g0020021 Lotus japonicus HOM05D006753 ORTHO05D008521 3.1e-23 112.1 117 54.7
BraA09t41301Z Brassica rapa HOM05D006753 ORTHO05D008521 1.5e-22 109.8 114 58.8
Nitab4.5_0001307g0130 Nicotiana tabacum HOM05D006753 ORTHO05D008521 2.0e-22 109.4 123 53.7
SEGI_09956 Sequoiadendron giganteum HOM05D006753 ORTHO05D008521 2.6e-22 109.0 126 50.8
AUR62020818 Chenopodium quinoa HOM05D006753 ORTHO05D008521 3.4e-22 108.6 118 54.2
AL5G33000 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 4.5e-22 108.2 120 50.8
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 5.9e-22 107.8 116 54.3
CARHR204450 Cardamine hirsuta HOM05D006753 ORTHO05D008521 1.7e-21 106.3 126 53.2
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 3.8e-21 105.1 122 54.1
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 6.5e-21 104.4 74 68.9
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 6.5e-21 104.4 74 68.9
Prupe.1G351400 Prunus persica HOM05D006753 ORTHO05D008521 2.5e-20 102.4 119 52.1
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 7.2e-20 100.9 123 53.7
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 7.2e-20 100.9 123 53.7
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 7.2e-20 100.9 123 53.7
Eucgr.J00331 Eucalyptus grandis HOM05D006753 ORTHO05D008521 1.2e-19 100.1 164 44.5
Peaxi162Scf00003g02334 Petunia axillaris HOM05D006753 ORTHO05D008521 1.2e-19 100.1 105 55.2
AL6G19240 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 2.7e-19 99.0 109 53.2
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 2.7e-19 99.0 125 52.0
BcaB08g34880 Brassica carinata HOM05D006753 ORTHO05D008521 1.0e-18 97.1 122 51.6
AT5G08535 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 1.4e-18 96.7 112 51.8
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 1.8e-18 96.3 125 51.2
BolC9t59587H Brassica oleracea HOM05D006753 ORTHO05D008521 2.3e-18 95.9 125 49.6
A10p28190 Brassica napus HOM05D006753 ORTHO05D008521 3.0e-18 95.5 125 48.8
BraA10t44868Z Brassica rapa HOM05D006753 ORTHO05D008521 3.0e-18 95.5 125 48.8
C09p68400 Brassica napus HOM05D006753 ORTHO05D008521 3.9e-18 95.1 124 49.2
Cc11_g04160 Coffea canephora HOM05D006753 ORTHO05D008521 2.5e-17 92.4 64 68.8
Pp3c15_7650 Physcomitrium patens HOM05D006753 ORTHO05D008521 4.3e-17 91.7 122 48.4
HanXRQChr14g0446421 Helianthus annuus HOM05D006753 ORTHO05D008521 3.7e-16 88.6 59 72.9
HPP92_003487 Vanilla planifolia HOM05D006753 ORTHO05D008521 6.3e-16 87.8 88 55.7
HPP92_026885 Vanilla planifolia HOM05D006753 ORTHO05D008521 6.3e-16 87.8 88 55.7
Mapoly0001s0293 Marchantia polymorpha HOM05D006753 ORTHO05D008521 1.1e-15 87.0 116 45.7
Aa31LG3G18000 Aethionema arabicum HOM05D006753 ORTHO05D008521 1.4e-15 86.7 118 49.2
BcaB08g37248 Brassica carinata HOM05D006753 ORTHO05D008521 5.9e-14 81.3 109 49.5
SHI21226 Sapria himalayana HOM05D000843 ORTHO05D000698 5.9e-14 81.3 75 60.0
Thhalv10015604m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 1.7e-13 79.7 88 58.0
Carub.0006s0749 Capsella rubella HOM05D006753 ORTHO05D008521 5.0e-13 78.2 119 43.7
SMO166G0033 Selaginella moellendorffii HOM05D006753 ORTHO05D008521 6.5e-13 77.8 106 49.1
Nitab4.5_0002355g0040 Nicotiana tabacum HOM05D006753 ORTHO05D008521 8.5e-13 77.4 124 46.0
SMO115G0110 Selaginella moellendorffii HOM05D000422 ORTHO05D002369 4.2e-12 75.1 102 49.0
COL.COLO4_21663 Corchorus olitorius HOM05D006753 ORTHO05D008521 2.3e-10 69.3 86 54.7
Haze_17401 Corylus avellana HOM05D006753 ORTHO05D008521 4.4e-09 65.1 60 58.3
AagrBONN_evm.TU.Sc2ySwM_228.1188 Anthoceros agrestis HOM05D006753 ORTHO05D008521 3.7e-08 62.0 115 39.1
vmacro19681 Vaccinium macrocarpon HOM05D006753 ORTHO05D008521 3.1e-07 58.9 33 78.8
CSS0023466 Camellia sinensis var. sinensis HOM05D006753 ORTHO05D008521 1.2e-06 57.0 27 88.9
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 1.2e-06 57.0 57 47.4
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 1.5e-06 56.6 60 50.0
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 2.6e-06 55.8 50 54.0
SEGI_05037 Sequoiadendron giganteum HOM05D006823 ORTHO05D008608 2.6e-06 55.8 57 43.9
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 2.6e-06 55.8 50 54.0
Cre02.g085200 Chlamydomonas reinhardtii HOM05D006753 ORTHO05D008521 4.5e-06 55.1 45 51.1
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 5.9e-06 54.7 46 56.5
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 7.7e-06 54.3 47 55.3
PGR042G2720 Punica granatum HOM05D005384 ORTHO05D006477 7.7e-06 54.3 59 42.4
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 7.7e-06 54.3 56 50.0


User provided reference genes

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