Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.340 Acer truncatum HOM05D005638 ORTHO05D006913 1.7e-171 605.9 313 100.0
QL01p003053 Quercus lobata HOM05D005638 ORTHO05D006913 1.4e-149 533.1 308 87.7
Ciclev10015376m.g Citrus clementina HOM05D005638 ORTHO05D006913 1.2e-148 530.0 308 88.0
CiPaw.05G245200 Carya illinoinensis HOM05D005638 ORTHO05D006913 1.8e-144 516.2 307 84.0
Thecc.05G134700 Theobroma cacao HOM05D005638 ORTHO05D006913 1.2e-143 513.5 301 84.4
Potri.008G126300 Populus trichocarpa HOM05D005638 ORTHO05D006913 5.8e-143 511.1 301 85.7
CSS0002078 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 3.2e-141 505.4 308 83.8
Duzib106G1906 Durio zibethinus HOM05D005638 ORTHO05D006913 5.5e-141 504.6 301 82.7
CSS0005399 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 7.1e-141 504.2 308 83.8
Prupe.1G319900 Prunus persica HOM05D005638 ORTHO05D006913 2.7e-140 502.3 308 84.4
Haze_00683 Corylus avellana HOM05D005638 ORTHO05D006913 1.3e-139 500.0 315 80.6
Sabra08G0095100 Salix brachista HOM05D005638 ORTHO05D006913 1.1e-138 496.9 301 83.7
Gorai.013G001800 Gossypium raimondii HOM05D005638 ORTHO05D006913 1.3e-137 493.4 301 81.1
Hma1.2p1_0882F.1_g232180 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 1.6e-137 493.0 308 82.8
GSVIVG01011806001 Vitis vinifera HOM05D005638 ORTHO05D006913 2.2e-137 492.7 314 81.2
COL.COLO4_22224 Corchorus olitorius HOM05D005638 ORTHO05D006913 3.7e-137 491.9 299 82.3
Eucgr.H00037 Eucalyptus grandis HOM05D005638 ORTHO05D006913 5.3e-136 488.0 304 78.0
TWI75G0624 Tripterygium wilfordii HOM05D005638 ORTHO05D006913 1.2e-135 486.9 301 82.4
FvH4_4g26400 Fragaria vesca HOM05D005638 ORTHO05D006913 1.5e-135 486.5 305 80.7
FAN12G3267 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.5e-135 486.5 305 80.7
FAN12G2479 Fragaria x ananassa HOM05D005638 ORTHO05D006913 3.4e-135 485.3 305 80.3
Sed0003483 Sechium edule HOM05D005638 ORTHO05D006913 7.6e-135 484.2 298 81.5
Gohir.A13G000300 Gossypium hirsutum HOM05D005638 ORTHO05D006913 2.2e-134 482.6 303 79.5
MD16G1034700 Malus domestica HOM05D005638 ORTHO05D006913 8.5e-134 480.7 322 79.5
CANSAT01G0033 Cannabis sativa HOM05D005638 ORTHO05D006913 1.9e-133 479.6 308 79.9
Lsat_1_v5_gn_3_11020 Lactuca sativa HOM05D005638 ORTHO05D006913 5.5e-133 478.0 308 78.2
ClCG07G004650 Citrullus lanatus HOM05D005638 ORTHO05D006913 1.0e-131 473.8 309 78.3
PGR119G2299 Punica granatum HOM05D005638 ORTHO05D006913 1.4e-131 473.4 302 78.1
arahy.Tifrunner.gnm1.ann1.NRC6UQ Arachis hypogaea HOM05D005638 ORTHO05D006913 1.8e-131 473.0 310 75.5
MELO3C034164.2 Cucumis melo HOM05D005638 ORTHO05D006913 1.8e-131 473.0 301 79.1
CsaV3_5G010590 Cucumis sativus L. HOM05D005638 ORTHO05D006913 5.1e-131 471.5 301 77.7
ECA246G4189 Erigeron canadensis HOM05D005638 ORTHO05D006913 1.5e-130 469.9 303 77.6
arahy.Tifrunner.gnm1.ann1.CLD3MC Arachis hypogaea HOM05D005638 ORTHO05D006913 2.5e-130 469.2 303 76.2
CARHR143670 Cardamine hirsuta HOM05D005638 ORTHO05D006913 2.5e-130 469.2 301 76.7
A06p44660 Brassica napus HOM05D005638 ORTHO05D006913 4.3e-130 468.4 308 75.3
Cc11_g09280 Coffea canephora HOM05D005638 ORTHO05D006913 7.4e-130 467.6 300 77.7
Sp2g12590 Schrenkiella parvula HOM05D005638 ORTHO05D006913 2.2e-129 466.1 301 76.4
PGSC0003DMG401030517 Solanum tuberosum HOM05D005638 ORTHO05D006913 2.2e-129 466.1 301 77.1
C07p31590 Brassica napus HOM05D005638 ORTHO05D006913 4.8e-129 464.9 308 74.7
Sopen05g004380 Solanum pennellii HOM05D005638 ORTHO05D006913 4.8e-129 464.9 301 76.7
Manes.10G073400 Manihot esculenta HOM05D005638 ORTHO05D006913 6.3e-129 464.5 300 78.3
RcHm_v2.0_Chr4g0434031 Rosa chinensis HOM05D005638 ORTHO05D006913 6.3e-129 464.5 308 78.2
Medtr1g109100 Medicago truncatula HOM05D005638 ORTHO05D006913 8.2e-129 464.2 300 76.3
Nn4g24022 Nelumbo nucifera HOM05D005638 ORTHO05D006913 8.2e-129 464.2 305 76.1
Solyc05g008540.3 Solanum lycopersicum HOM05D005638 ORTHO05D006913 8.2e-129 464.2 301 76.7
Psat6g222760 Pisum sativum HOM05D005638 ORTHO05D006913 1.1e-128 463.8 310 74.2
CAN.G1489.15 Capsicum annuum HOM05D005638 ORTHO05D006913 1.4e-128 463.4 301 77.1
HanXRQChr17g0534901 Helianthus annuus HOM05D005638 ORTHO05D006913 1.8e-128 463.0 303 74.6
BcaC06g34215 Brassica carinata HOM05D005638 ORTHO05D006913 4.1e-128 461.8 308 74.0
Thhalv10000894m.g Eutrema salsugineum HOM05D005638 ORTHO05D006913 5.3e-128 461.5 314 74.2
vmacro10617 Vaccinium macrocarpon HOM05D005638 ORTHO05D006913 5.3e-128 461.5 309 76.4
Glyma.10G268100 Glycine max HOM05D005638 ORTHO05D006913 6.9e-128 461.1 303 75.6
Lalb_Chr02g0145641 Lupinus albus HOM05D005638 ORTHO05D006913 1.5e-127 459.9 303 74.3
Lj5g0007245 Lotus japonicus HOM05D005638 ORTHO05D006913 3.4e-127 458.8 303 75.6
BcaC06g31332 Brassica carinata HOM05D005638 ORTHO05D006913 4.5e-127 458.4 308 74.0
Carub.0005s0010 Capsella rubella HOM05D005638 ORTHO05D006913 4.5e-127 458.4 301 75.7
AL5G10070 Arabidopsis lyrata HOM05D005638 ORTHO05D006913 5.9e-127 458.0 301 76.1
Ca_30212_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 7.7e-127 457.6 309 73.8
Phvul.007G034200 Phaseolus vulgaris HOM05D005638 ORTHO05D006913 1.0e-126 457.2 298 75.8
Sc14g0007070 Simmondsia chinensis HOM05D005638 ORTHO05D006913 2.2e-126 456.1 305 76.1
FAN07G1772 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.1e-125 453.8 348 71.0
Glyma.20G123000 Glycine max HOM05D005638 ORTHO05D006913 1.1e-125 453.8 303 74.9
Nitab4.5_0000350g0120 Nicotiana tabacum HOM05D005638 ORTHO05D006913 7.2e-125 451.1 316 73.4
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 4.7e-124 448.4 305 73.1
MSTRG.2199 Avicennia marina HOM05D005638 ORTHO05D006913 8.8e-123 444.1 301 74.1
Migut.E00391 Erythranthe guttata HOM05D005638 ORTHO05D006913 1.5e-122 443.4 308 73.4
THA.LOC104805050 Tarenaya hassleriana HOM05D005638 ORTHO05D006913 5.7e-122 441.4 301 73.1
EL10Ac6g14273 Beta vulgaris HOM05D005638 ORTHO05D006913 1.7e-121 439.9 301 73.8
Peaxi162Scf00205g01130 Petunia axillaris HOM05D005638 ORTHO05D006913 1.7e-121 439.9 300 74.7
Hund25015 Selenicereus undatus HOM05D005638 ORTHO05D006913 2.2e-121 439.5 301 75.4
AT2G01120 Arabidopsis thaliana HOM05D005638 ORTHO05D006913 3.7e-121 438.7 302 72.8
Oeu064207.2 Olea europaea HOM05D005638 ORTHO05D006913 6.3e-121 438.0 355 65.6
PSO017G2298 Papaver somniferum HOM05D005638 ORTHO05D006913 1.8e-120 436.4 305 72.5
PSO478G2841 Papaver somniferum HOM05D005638 ORTHO05D006913 7.0e-120 434.5 305 72.1
PSO782G2730 Papaver somniferum HOM05D005638 ORTHO05D006913 1.5e-119 433.3 305 71.1
Atru.chr11.333 Acer truncatum HOM05D005638 ORTHO05D006913 2.0e-119 433.0 225 98.2
Aa31LG2G8760 Aethionema arabicum HOM05D005638 ORTHO05D006913 1.3e-118 430.3 308 71.1
BcaB07g30423 Brassica carinata HOM05D005638 ORTHO05D006913 2.2e-118 429.5 302 71.9
Aqoxy5G03877 Aquilegia oxysepala HOM05D005638 ORTHO05D006913 6.1e-116 421.4 304 69.1
Lj2C166G5 Lonicera japonica HOM05D005638 ORTHO05D006913 8.8e-115 417.5 355 64.8
FAN22G2072 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.7e-113 413.3 335 68.4
BraA06t27339Z Brassica rapa HOM05D005638 ORTHO05D006913 6.3e-113 411.4 318 66.4
Cpa.g.sc65.90 Carica papaya HOM05D005638 ORTHO05D006913 1.6e-111 406.8 271 77.1
AUR62042716 Chenopodium quinoa HOM05D005638 ORTHO05D006913 4.7e-108 395.2 342 62.6
ATR0691G289 Amborella trichopoda HOM05D005638 ORTHO05D006913 2.0e-106 389.8 307 67.4
Nitab4.5_0013146g0020 Nicotiana tabacum HOM05D005638 ORTHO05D006913 2.0e-106 389.8 381 57.5
FAN17G1216 Fragaria x ananassa HOM05D005638 ORTHO05D006913 4.4e-106 388.7 333 65.8
Os01g0683400 Oryza sativa ssp. japonica HOM05D005638 ORTHO05D006913 4.4e-106 388.7 350 57.7
HPP92_020141 Vanilla planifolia HOM05D005638 ORTHO05D006913 9.1e-104 380.9 306 60.8
Zm00001eb156550 Zea mays HOM05D005638 ORTHO05D006913 4.5e-103 378.6 303 63.7
Gohir.D13G001900 Gossypium hirsutum HOM05D005638 ORTHO05D006913 3.8e-102 375.6 301 66.4
Ca_23705_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 5.0e-102 375.2 240 77.1
SEGI_39107 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 9.4e-101 370.9 305 62.0
Cfa015815 Carpinus fangiana HOM05D005638 ORTHO05D006913 1.0e-99 367.5 216 85.6
Hma1.2p1_0882F.1_g232170 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 6.8e-99 364.8 216 86.1
MBI10_g06749_MAGBIO Magnolia biondii HOM05D005638 ORTHO05D006913 4.4e-98 362.1 263 70.7
Dinv16164 Davidia involucrata HOM05D005638 ORTHO05D006913 8.3e-97 357.8 235 79.1
SalBow8G2600 Salvia bowleyana HOM05D005638 ORTHO05D006913 3.1e-96 355.9 301 62.1
VMungo0720G2401 Vigna mungo HOM05D005638 ORTHO05D006913 3.5e-95 352.4 349 56.4
SGA_v2.0_scaffold170G38821 Striga asiatica HOM05D005638 ORTHO05D006913 1.1e-93 347.4 264 68.6
TAR622G0052 Trochodendron aralioides HOM05D005638 ORTHO05D006913 2.3e-91 339.7 250 72.8
unitig_52.g17425 Utricularia gibba HOM05D005638 ORTHO05D006913 1.7e-89 333.6 307 58.0
Mapoly0031s0066 Marchantia polymorpha HOM05D005638 ORTHO05D006913 1.8e-75 287.0 307 53.1
Rhsim11G0032100 Rhododendron simsii HOM05D005638 ORTHO05D006913 1.1e-69 267.7 173 77.5
CBR_g38777 Chara braunii HOM05D005638 ORTHO05D006913 4.0e-67 259.2 277 49.1
Pp3c16_11150 Physcomitrium patens HOM05D005638 ORTHO05D006913 8.9e-67 258.1 311 46.6
Dinv04905 Davidia involucrata HOM05D005638 ORTHO05D006913 1.5e-66 257.3 308 51.3
Ah.03g138510 Amaranthus hybridus HOM05D005638 ORTHO05D006913 8.3e-65 251.5 173 72.8
Thecc.06G067600 Theobroma cacao HOM05D005638 ORTHO05D006913 3.5e-63 246.1 139 84.9
AagrBONN_evm.TU.Sc2ySwM_344.3309 Anthoceros agrestis HOM05D005638 ORTHO05D006913 1.1e-59 234.6 304 45.7
TPR.G31713 Trifolium pratense HOM05D005638 ORTHO05D006913 1.1e-59 234.6 159 74.8
AUR62014211 Chenopodium quinoa HOM05D005638 ORTHO05D006913 7.6e-58 228.4 301 47.8
MD13G1032600 Malus domestica HOM05D005638 ORTHO05D006913 1.9e-56 223.8 155 76.8
MD13G1032700 Malus domestica HOM05D005638 ORTHO05D006913 4.2e-56 222.6 146 79.5
A02p31700 Brassica napus HOM05D005638 ORTHO05D006913 2.1e-55 220.3 167 69.5
CDE11G0817 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 1.4e-51 207.6 125 80.8
BcaC03g16999 Brassica carinata HOM05D005638 ORTHO05D006913 1.9e-48 197.2 140 70.0
BolC2t10998H Brassica oleracea HOM05D005638 ORTHO05D006913 3.1e-43 179.9 301 39.5
C02p49080 Brassica napus HOM05D005638 ORTHO05D006913 3.4e-42 176.4 204 48.5
PRCOL_00001621 Prasinoderma coloniale HOM05D005638 ORTHO05D006913 3.4e-42 176.4 258 38.8
PSO170G3371 Papaver somniferum HOM05D005638 ORTHO05D006913 3.9e-38 162.9 125 64.8
Rhsim11G0032000 Rhododendron simsii HOM05D005638 ORTHO05D006913 2.8e-36 156.8 158 56.3
BraA02t08176Z Brassica rapa HOM05D005638 ORTHO05D006913 7.6e-34 148.7 106 74.5
MCO02G007 Micromonas commoda HOM05D005638 ORTHO05D006913 2.2e-33 147.1 171 46.8
SEGI_20204 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 4.9e-33 146.0 128 59.4
TPR.G15740 Trifolium pratense HOM05D005638 ORTHO05D006913 6.4e-33 145.6 119 66.4
TPR.G7417 Trifolium pratense HOM05D005638 ORTHO05D006913 4.6e-31 139.4 99 68.7
Cfa022174 Carpinus fangiana HOM05D005638 ORTHO05D006913 4.6e-23 112.8 228 32.9
Cre17.g726500 Chlamydomonas reinhardtii HOM05D005638 ORTHO05D006913 2.5e-21 107.1 207 34.3
Rhsim09G0101800 Rhododendron simsii HOM05D005638 ORTHO05D006913 3.3e-21 106.7 116 56.9
SEGI_29357 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 4.1e-19 99.8 95 50.5
FAN28G2655 Fragaria x ananassa HOM05D005638 ORTHO05D006913 3.4e-18 96.7 65 69.2
SMO351G0247 Selaginella moellendorffii HOM05D005638 ORTHO05D006913 3.4e-18 96.7 126 43.7
Rhsim09G0101700 Rhododendron simsii HOM05D005638 ORTHO05D006913 1.7e-17 94.4 79 62.0
SHI16222 Sapria himalayana HOM05D000030 ORTHO05D007344 7.2e-16 89.0 54 83.3
Hma1.2p1_0882F.1_g232190 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 7.2e-08 62.4 36 80.6


User provided reference genes

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