Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 1.8e-31 138.7 71 100.0
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 4.4e-14 80.9 62 61.3
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 9.9e-14 79.7 64 62.5
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 2.2e-13 78.6 66 60.6
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 2.9e-13 78.2 62 62.9
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 2.9e-13 78.2 65 61.5
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 2.9e-13 78.2 62 62.9
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 4.9e-13 77.4 64 59.4
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 8.3e-13 76.6 66 59.1
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 1.1e-12 76.3 62 59.7
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 1.1e-12 76.3 65 56.9
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 1.4e-12 75.9 64 59.4
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 1.9e-12 75.5 62 61.3
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.4e-12 75.1 62 59.7
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 2.4e-12 75.1 62 59.7
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 2.4e-12 75.1 65 56.9
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 2.4e-12 75.1 65 56.9
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 3.2e-12 74.7 66 54.5
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 3.2e-12 74.7 66 54.5
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.4e-12 73.9 62 58.1
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 5.4e-12 73.9 62 59.7
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 9.2e-12 73.2 62 59.7
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 9.2e-12 73.2 62 59.7
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 1.6e-11 72.4 62 58.1
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.6e-11 72.4 61 59.0
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 1.6e-11 72.4 62 61.3
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 1.6e-11 72.4 62 61.3
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.6e-11 72.4 57 64.9
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 2.1e-11 72.0 67 56.7
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 2.1e-11 72.0 62 58.1
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 2.1e-11 72.0 61 60.7
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 2.1e-11 72.0 65 50.8
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 2.7e-11 71.6 61 60.7
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 2.7e-11 71.6 65 53.8
Migut.N01590 Erythranthe guttata HOM05D004166 ORTHO05D004992 2.7e-11 71.6 65 56.9
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.7e-11 71.6 63 57.1
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 3.5e-11 71.2 62 58.1
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 3.5e-11 71.2 62 59.7
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 4.6e-11 70.9 64 54.7
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 6.0e-11 70.5 60 61.7
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 7.8e-11 70.1 65 55.4
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 7.8e-11 70.1 62 54.8
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 1.0e-10 69.7 62 53.2
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.0e-10 69.7 60 60.0
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 1.0e-10 69.7 60 60.0
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 1.0e-10 69.7 65 52.3
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 1.0e-10 69.7 62 56.5
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 1.0e-10 69.7 50 68.0
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 1.0e-10 69.7 62 54.8
Potri.006G054200 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.7e-10 68.9 60 60.0
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 2.3e-10 68.6 62 56.5
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 2.3e-10 68.6 62 56.5
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 3.0e-10 68.2 61 57.4
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 3.0e-10 68.2 60 58.3
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 3.0e-10 68.2 61 57.4
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 3.0e-10 68.2 61 57.4
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 3.9e-10 67.8 58 58.6
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 3.9e-10 67.8 60 56.7
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 3.9e-10 67.8 60 56.7
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 5.1e-10 67.4 67 55.2
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 5.1e-10 67.4 64 53.1
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 5.1e-10 67.4 64 51.6
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 5.1e-10 67.4 61 55.7
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 6.6e-10 67.0 61 55.7
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 6.6e-10 67.0 61 55.7
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 6.6e-10 67.0 60 56.7
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 6.6e-10 67.0 62 51.6
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 6.6e-10 67.0 61 55.7
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 8.6e-10 66.6 61 55.7
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 8.6e-10 66.6 61 55.7
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 8.6e-10 66.6 57 59.6
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 8.6e-10 66.6 62 51.6
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 8.6e-10 66.6 62 51.6
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 8.6e-10 66.6 61 55.7
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 1.1e-09 66.2 62 53.2
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 1.1e-09 66.2 63 54.0
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 1.1e-09 66.2 63 54.0
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 1.9e-09 65.5 64 54.7
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 1.9e-09 65.5 71 50.7
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 1.9e-09 65.5 61 54.1
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 1.9e-09 65.5 50 64.0
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 2.5e-09 65.1 60 55.0
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 3.3e-09 64.7 61 49.2
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 3.3e-09 64.7 61 54.1
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 5.6e-09 63.9 58 53.4
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 5.6e-09 63.9 61 52.5
ECA248G3658 Erigeron canadensis HOM05D004166 ORTHO05D004992 5.6e-09 63.9 50 62.0
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 5.6e-09 63.9 49 63.3
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 7.3e-09 63.5 63 50.8
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.6e-08 62.4 61 45.9
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 1.6e-08 62.4 61 45.9
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 2.1e-08 62.0 62 50.0
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 2.1e-08 62.0 58 55.2
Medtr3g028700 Medicago truncatula HOM05D004166 ORTHO05D004992 2.1e-08 62.0 61 54.1
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 2.8e-08 61.6 50 56.0
SalBow6G5402 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.8e-08 61.6 62 48.4
SalBow8G1301 Salvia bowleyana HOM05D004166 ORTHO05D004992 2.8e-08 61.6 62 48.4
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 2.8e-08 61.6 61 50.8
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 3.6e-08 61.2 55 56.4
PGR044G1658 Punica granatum HOM05D004166 ORTHO05D004992 3.6e-08 61.2 62 48.4
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 4.7e-08 60.8 61 49.2
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 4.7e-08 60.8 60 48.3
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 6.2e-08 60.5 64 48.4
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 8.1e-08 60.1 61 50.8
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 1.1e-07 59.7 62 50.0
EL10Ac2g04320 Beta vulgaris HOM05D004166 ORTHO05D004992 1.1e-07 59.7 53 52.8
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 1.1e-07 59.7 62 50.0
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 1.1e-07 59.7 61 50.8
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 1.1e-07 59.7 63 49.2
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 1.4e-07 59.3 62 50.0
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 1.4e-07 59.3 50 58.0
HanXRQChr11g0338921 Helianthus annuus HOM05D004166 ORTHO05D004992 1.4e-07 59.3 65 44.6
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 1.4e-07 59.3 62 51.6
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 1.4e-07 59.3 58 58.6
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 1.8e-07 58.9 61 49.2
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 1.8e-07 58.9 61 49.2
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 1.8e-07 58.9 61 49.2
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 1.8e-07 58.9 62 48.4
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 2.4e-07 58.5 60 51.7
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 2.4e-07 58.5 60 51.7
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 2.4e-07 58.5 62 48.4
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 3.1e-07 58.2 61 50.8
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 3.1e-07 58.2 51 54.9
AUR62023062 Chenopodium quinoa HOM05D004166 ORTHO05D004992 4.0e-07 57.8 53 50.9
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 4.0e-07 57.8 68 47.1
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 4.0e-07 57.8 62 50.0
AUR62009381 Chenopodium quinoa HOM05D004166 ORTHO05D004992 5.2e-07 57.4 53 50.9
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 5.2e-07 57.4 61 49.2
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 6.8e-07 57.0 62 50.0
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 8.9e-07 56.6 50 54.0
Lalb_Chr20g0110831 Lupinus albus HOM05D004166 ORTHO05D004992 8.9e-07 56.6 61 45.9
Actinidia09355 Actinidia chinensis HOM05D004166 ORTHO05D004992 1.2e-06 56.2 58 53.4
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 1.2e-06 56.2 60 48.3
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 1.2e-06 56.2 60 48.3
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 1.2e-06 56.2 60 48.3
Nitab4.5_0000634g0190 Nicotiana tabacum HOM05D004166 ORTHO05D004992 1.5e-06 55.8 38 71.1
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.5e-06 55.8 67 47.8
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 2.0e-06 55.5 61 50.8
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 3.4e-06 54.7 61 45.9
SGA_v2.0_scaffold453G51858 Striga asiatica HOM05D004166 ORTHO05D004992 4.4e-06 54.3 50 52.0
Phvul.001G136000 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 7.6e-06 53.5 61 44.3
CiPaw.13G003800 Carya illinoinensis HOM05D004166 ORTHO05D004992 9.9e-06 53.1 69 40.6
Lalb_Chr01g0017501 Lupinus albus HOM05D004166 ORTHO05D004992 9.9e-06 53.1 58 46.6


User provided reference genes

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