Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.2648 Acer truncatum HOM05D006848 ORTHO05D008445 2.7e-111 405.6 242 100.0
Ciclev10032624m.g Citrus clementina HOM05D006848 ORTHO05D008445 1.1e-91 340.5 239 74.1
Gohir.A08G053600 Gossypium hirsutum HOM05D006848 ORTHO05D008445 1.4e-88 330.1 176 88.6
Gohir.D08G063100 Gossypium hirsutum HOM05D006848 ORTHO05D008445 1.9e-88 329.7 176 88.6
Gorai.004G065300 Gossypium raimondii HOM05D006848 ORTHO05D008445 1.9e-88 329.7 176 88.6
Eucgr.G03390 Eucalyptus grandis HOM05D006848 ORTHO05D008445 3.2e-88 328.9 247 69.2
FvH4_7g00900 Fragaria vesca HOM05D006848 ORTHO05D008445 7.1e-88 327.8 174 89.7
Haze_03213 Corylus avellana HOM05D006848 ORTHO05D008445 4.6e-87 325.1 248 77.4
Migut.B01319 Erythranthe guttata HOM05D006848 ORTHO05D008445 4.6e-87 325.1 245 73.9
COL.COLO4_23924 Corchorus olitorius HOM05D006848 ORTHO05D008445 1.3e-86 323.6 240 70.4
PGR031G3843 Punica granatum HOM05D006848 ORTHO05D008445 1.3e-86 323.6 251 77.3
Thecc.01G412000 Theobroma cacao HOM05D006848 ORTHO05D008445 1.3e-86 323.6 242 71.1
MD07G1008600 Malus domestica HOM05D006848 ORTHO05D008445 2.3e-86 322.8 176 87.5
VMungo1080G1360 Vigna mungo HOM05D006848 ORTHO05D008445 2.3e-86 322.8 174 89.1
Aqoxy3G03705 Aquilegia oxysepala HOM05D006848 ORTHO05D008445 3.9e-86 322.0 174 86.8
CiPaw.13G004400 Carya illinoinensis HOM05D006848 ORTHO05D008445 3.9e-86 322.0 176 87.5
Sabra09G0046200 Salix brachista HOM05D006848 ORTHO05D008445 1.1e-85 320.5 238 70.6
Glyma.15G273300 Glycine max HOM05D006848 ORTHO05D008445 1.5e-85 320.1 173 89.0
Hma1.2p1_0312F.1_g121500 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 1.5e-85 320.1 247 76.1
Eucgr.H02489 Eucalyptus grandis HOM05D006848 ORTHO05D008445 3.3e-85 318.9 172 87.2
FAN10G1997 Fragaria x ananassa HOM05D006848 ORTHO05D008445 3.3e-85 318.9 180 86.7
Lalb_Chr01g0015361 Lupinus albus HOM05D006848 ORTHO05D008445 3.3e-85 318.9 174 86.8
TAR623G0094 Trochodendron aralioides HOM05D006848 ORTHO05D008445 4.3e-85 318.5 241 78.8
TWI09G1547 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 7.3e-85 317.8 178 86.0
CANSAT80G2127 Cannabis sativa HOM05D006848 ORTHO05D008445 9.6e-85 317.4 243 68.3
Glyma.08G154300 Glycine max HOM05D006848 ORTHO05D008445 9.6e-85 317.4 174 87.4
QL04p007215 Quercus lobata HOM05D006848 ORTHO05D008445 1.3e-84 317.0 245 73.9
Duzib138G1675 Durio zibethinus HOM05D006848 ORTHO05D008445 1.6e-84 316.6 174 86.2
Oeu036185.1 Olea europaea HOM05D006848 ORTHO05D008445 2.8e-84 315.8 242 74.8
TWI53G1868 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 2.8e-84 315.8 250 66.8
Nitab4.5_0002477g0050 Nicotiana tabacum HOM05D006848 ORTHO05D008445 3.6e-84 315.5 243 74.1
THA.LOC104819691 Tarenaya hassleriana HOM05D006848 ORTHO05D008445 6.2e-84 314.7 174 85.1
Rhsim07G0054800 Rhododendron simsii HOM05D006848 ORTHO05D008445 8.1e-84 314.3 250 74.4
PGSC0003DMG400006872 Solanum tuberosum HOM05D006848 ORTHO05D008445 8.1e-84 314.3 242 71.1
Sopen01g034120 Solanum pennellii HOM05D006848 ORTHO05D008445 1.1e-83 313.9 171 87.1
CAN.G170.111 Capsicum annuum HOM05D006848 ORTHO05D008445 2.4e-83 312.8 249 71.5
Ca_14368_v3 Cicer arietinum L. HOM05D006848 ORTHO05D008445 2.4e-83 312.8 173 84.4
Solyc01g087040.2 Solanum lycopersicum HOM05D006848 ORTHO05D008445 2.4e-83 312.8 171 86.5
Cpa.g.sc386.5 Carica papaya HOM05D006848 ORTHO05D008445 4.0e-83 312.0 171 86.5
Nitab4.5_0000634g0080 Nicotiana tabacum HOM05D006848 ORTHO05D008445 5.3e-83 311.6 212 76.9
TAR623G0130 Trochodendron aralioides HOM05D006848 ORTHO05D008445 5.3e-83 311.6 173 83.8
MBI01_g27616_MAGBIO Magnolia biondii HOM05D006848 ORTHO05D008445 6.9e-83 311.2 174 83.9
Peaxi162Scf00347g00071 Petunia axillaris HOM05D006848 ORTHO05D008445 9.0e-83 310.8 239 73.2
Peaxi162Scf00428g00063 Petunia axillaris HOM05D006848 ORTHO05D008445 1.5e-82 310.1 175 82.9
AL5G46400 Arabidopsis lyrata HOM05D006848 ORTHO05D008445 2.0e-82 309.7 172 85.5
Potri.009G062500 Populus trichocarpa HOM05D006848 ORTHO05D008445 2.0e-82 309.7 208 73.6
Psat5g204320 Pisum sativum HOM05D006848 ORTHO05D008445 2.6e-82 309.3 170 83.5
SalBow5G3403 Salvia bowleyana HOM05D006848 ORTHO05D008445 4.4e-82 308.5 238 67.2
Carub.0005s3015 Capsella rubella HOM05D006848 ORTHO05D008445 5.8e-82 308.1 172 84.9
Cc02_g27800 Coffea canephora HOM05D006848 ORTHO05D008445 9.9e-82 307.4 175 82.3
MD02G1313800 Malus domestica HOM05D006848 ORTHO05D008445 1.7e-81 306.6 249 70.3
Medtr3g028150 Medicago truncatula HOM05D006848 ORTHO05D008445 1.7e-81 306.6 169 84.0
BcaC01g04883 Brassica carinata HOM05D006848 ORTHO05D008445 2.9e-81 305.8 172 85.5
A03p27190 Brassica napus HOM05D006848 ORTHO05D008445 2.9e-81 305.8 172 85.5
BolC3t15604H Brassica oleracea HOM05D006848 ORTHO05D008445 2.9e-81 305.8 172 85.5
BraA03t11932Z Brassica rapa HOM05D006848 ORTHO05D008445 2.9e-81 305.8 172 85.5
Sed0006624 Sechium edule HOM05D006848 ORTHO05D008445 2.9e-81 305.8 176 81.2
TPR.G12217 Trifolium pratense HOM05D006848 ORTHO05D008445 2.9e-81 305.8 176 81.2
CARHR291430 Cardamine hirsuta HOM05D006848 ORTHO05D008445 3.8e-81 305.4 169 85.8
Lsat_1_v5_gn_1_107841 Lactuca sativa HOM05D006848 ORTHO05D008445 3.8e-81 305.4 243 76.5
ClCG09G004240 Citrullus lanatus HOM05D006848 ORTHO05D008445 8.4e-81 304.3 211 71.1
Sc10g0000020 Simmondsia chinensis HOM05D006848 ORTHO05D008445 8.4e-81 304.3 170 82.9
Phvul.005G020200 Phaseolus vulgaris HOM05D006848 ORTHO05D008445 1.1e-80 303.9 246 70.3
EL10Ac2g03652 Beta vulgaris HOM05D006848 ORTHO05D008445 1.4e-80 303.5 177 81.4
BcaB01g02988 Brassica carinata HOM05D006848 ORTHO05D008445 1.4e-80 303.5 169 86.4
MELO3C023542.2 Cucumis melo HOM05D006848 ORTHO05D008445 1.9e-80 303.1 179 81.0
DCAR_029663 Daucus carota HOM05D006848 ORTHO05D008445 1.9e-80 303.1 175 81.1
Lj7A569T67 Lonicera japonica HOM05D006848 ORTHO05D008445 1.9e-80 303.1 170 84.1
CsaV3_7G031150 Cucumis sativus L. HOM05D006848 ORTHO05D008445 2.4e-80 302.8 246 63.4
HanXRQChr01g0016151 Helianthus annuus HOM05D006848 ORTHO05D008445 2.4e-80 302.8 244 67.6
vmacro13656 Vaccinium macrocarpon HOM05D006848 ORTHO05D008445 5.4e-80 301.6 239 70.3
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 2.7e-79 299.3 171 81.3
PSO384G0049 Papaver somniferum HOM05D006848 ORTHO05D008445 3.5e-79 298.9 173 81.5
Nn113s43373 Nelumbo nucifera HOM05D006848 ORTHO05D008445 4.6e-79 298.5 177 79.7
Nn2g15435 Nelumbo nucifera HOM05D006848 ORTHO05D008445 4.6e-79 298.5 177 79.7
FAN01G1688 Fragaria x ananassa HOM05D006848 ORTHO05D008445 2.3e-78 296.2 174 83.3
Prupe.2G012000 Prunus persica HOM05D006848 ORTHO05D008445 2.3e-78 296.2 177 80.2
PSO135G0340 Papaver somniferum HOM05D006848 ORTHO05D008445 3.0e-78 295.8 173 80.9
CDE05G1882 Ceratophyllum demersum HOM05D006848 ORTHO05D008445 2.5e-77 292.7 175 79.4
arahy.Tifrunner.gnm1.ann1.27LE56 Arachis hypogaea HOM05D006848 ORTHO05D008445 3.3e-77 292.4 174 80.5
arahy.Tifrunner.gnm1.ann1.9ZN1DC Arachis hypogaea HOM05D006848 ORTHO05D008445 3.3e-77 292.4 174 80.5
SGA_v2.0_scaffold167G38443 Striga asiatica HOM05D006848 ORTHO05D008445 1.3e-76 290.4 241 70.1
ECA248G3622 Erigeron canadensis HOM05D006848 ORTHO05D008445 8.1e-76 287.7 244 66.0
RcHm_v2.0_Chr3g0473601 Rosa chinensis HOM05D006848 ORTHO05D008445 2.0e-74 283.1 151 90.7
AUR62009377 Chenopodium quinoa HOM05D006848 ORTHO05D008445 1.3e-73 280.4 171 77.2
FAN06G1876 Fragaria x ananassa HOM05D006848 ORTHO05D008445 1.3e-73 280.4 165 83.0
Sp1g00010 Schrenkiella parvula HOM05D006848 ORTHO05D008445 1.7e-73 280.0 173 79.8
Sp5g00040 Schrenkiella parvula HOM05D006848 ORTHO05D008445 1.7e-73 280.0 173 79.8
ATR0605G006 Amborella trichopoda HOM05D006848 ORTHO05D008445 3.8e-73 278.9 175 76.0
C03p32680 Brassica napus HOM05D006848 ORTHO05D008445 9.3e-72 274.2 151 88.7
Aa31LG10G17430 Aethionema arabicum HOM05D006848 ORTHO05D008445 3.0e-70 269.2 152 82.2
SEGI_25651 Sequoiadendron giganteum HOM05D006848 ORTHO05D008445 1.5e-69 266.9 170 73.5
AUR62023058 Chenopodium quinoa HOM05D006848 ORTHO05D008445 1.9e-69 266.5 171 73.7
Thhalv10006361m.g Eutrema salsugineum HOM05D006848 ORTHO05D008445 7.4e-69 264.6 170 76.5
AagrBONN_evm.TU.Sc2ySwM_228.3199 Anthoceros agrestis HOM05D006848 ORTHO05D008445 2.1e-68 263.1 176 68.2
Zm00001eb034740 Zea mays HOM05D006848 ORTHO05D008445 6.2e-68 261.5 169 74.0
Lj1g0010524 Lotus japonicus HOM05D006848 ORTHO05D008445 3.1e-67 259.2 173 74.0
HPP92_007477 Vanilla planifolia HOM05D006848 ORTHO05D008445 5.3e-67 258.5 175 70.9
SMO217G0004 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 3.8e-65 252.3 171 67.8
SMO356G0122 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 3.8e-65 252.3 171 67.8
Manes.10G144600 Manihot esculenta HOM05D006848 ORTHO05D008445 4.9e-65 251.9 202 71.8
AT3G63540 Arabidopsis thaliana HOM05D006848 ORTHO05D008445 1.3e-62 243.8 140 81.4
Os08g0504500 Oryza sativa ssp. japonica HOM05D006848 ORTHO05D008445 6.7e-62 241.5 169 69.2
Pp3c4_11800 Physcomitrium patens HOM05D006848 ORTHO05D008445 1.3e-60 237.3 170 65.3
Mapoly0075s0034 Marchantia polymorpha HOM05D006848 ORTHO05D008445 2.1e-60 236.5 175 64.0
Dinv43453 Davidia involucrata HOM05D006848 ORTHO05D008445 3.4e-58 229.2 125 87.2
Actinidia36713 Actinidia chinensis HOM05D006848 ORTHO05D008445 1.1e-56 224.2 132 79.5
CBR_g23941 Chara braunii HOM05D006848 ORTHO05D008445 2.7e-55 219.5 175 60.0
CDE05G3657 Ceratophyllum demersum HOM05D000031 ORTHO05D008445 1.7e-49 200.3 126 76.2
RcHm_v2.0_Chr1g0315791 Rosa chinensis HOM05D006848 ORTHO05D008445 2.7e-47 193.0 120 75.0
Hma1.2p1_0137F.1_g062450 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 1.3e-44 184.1 124 72.6
Actinidia24670 Actinidia chinensis HOM05D006848 ORTHO05D008445 3.6e-39 166.0 105 78.1
MCO14G442 Micromonas commoda HOM05D006848 ORTHO05D008445 1.0e-25 121.3 172 39.5
SEGI_20764 Sequoiadendron giganteum HOM05D006848 ORTHO05D008445 2.7e-23 113.2 62 83.9
Cre03.g198850 Chlamydomonas reinhardtii HOM05D006848 ORTHO05D008445 1.8e-22 110.5 174 35.1
PRCOL_00004469 Prasinoderma coloniale HOM05D006848 ORTHO05D008445 7.7e-18 95.1 175 35.4
A04p00030 Brassica napus HOM05D006848 ORTHO05D008445 2.7e-10 70.1 55 60.0
HanXRQChr05g0160801 Helianthus annuus HOM05D006773 ORTHO05D008775 2.1e-07 60.5 151 27.2
Hund17393 Selenicereus undatus HOM05D006773 ORTHO05D008775 2.1e-07 60.5 152 27.6
Lsat_1_v5_gn_6_96860 Lactuca sativa HOM05D006773 ORTHO05D008775 3.6e-07 59.7 152 27.6
ECA246G0400 Erigeron canadensis HOM05D006773 ORTHO05D005980 1.4e-06 57.8 151 26.5
MCO12G188 Micromonas commoda HOM05D006848 ORTHO05D008445 2.3e-06 57.0 180 30.6


User provided reference genes

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