Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 5.1e-232 807.4 403 100.0
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 3.0e-176 622.1 402 75.6
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 8.0e-153 544.3 416 71.4
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 6.4e-150 534.6 412 69.9
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 5.6e-146 521.5 408 68.1
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 4.0e-144 515.4 408 67.9
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.2e-143 513.8 408 67.9
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 7.3e-138 494.6 451 62.5
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 6.8e-136 488.0 424 63.4
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 3.7e-134 482.3 387 64.1
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.4e-133 480.3 330 76.7
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 7.1e-133 478.0 402 63.7
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 2.3e-131 473.0 411 64.2
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 3.0e-131 472.6 410 64.6
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 5.1e-131 471.9 402 62.7
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.5e-130 469.5 329 74.2
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 4.3e-130 468.8 329 73.9
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 2.8e-129 466.1 330 73.6
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 1.1e-128 464.2 330 73.3
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 1.4e-128 463.8 330 74.8
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 1.8e-128 463.4 326 74.8
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 2.0e-127 459.9 330 75.2
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 7.6e-127 458.0 332 71.4
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 2.2e-126 456.4 391 61.4
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 1.1e-125 454.1 394 60.9
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.7e-124 449.5 328 72.0
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 3.5e-124 449.1 330 71.8
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 4.6e-124 448.7 328 72.3
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.7e-123 446.8 328 71.6
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 2.3e-123 446.4 330 71.2
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 3.9e-123 445.7 321 71.3
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 2.8e-121 439.5 321 71.7
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 8.1e-121 438.0 331 70.7
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 1.1e-120 437.6 331 68.6
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 1.8e-120 436.8 329 70.5
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 3.1e-120 436.0 325 68.9
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 4.0e-120 435.6 325 69.5
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 4.0e-120 435.6 325 69.2
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 1.5e-119 433.7 328 68.6
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 2.0e-119 433.3 328 68.9
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 3.4e-119 432.6 407 59.5
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 3.4e-119 432.6 329 69.9
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 5.8e-119 431.8 332 68.4
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 7.6e-119 431.4 325 69.8
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 1.3e-118 430.6 365 61.1
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 1.7e-118 430.3 321 70.7
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 2.9e-118 429.5 329 69.3
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 3.8e-118 429.1 325 69.8
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 8.4e-118 427.9 325 69.2
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 1.1e-117 427.6 331 68.3
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 1.4e-117 427.2 349 65.3
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 1.9e-117 426.8 318 69.5
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 2.4e-117 426.4 316 72.2
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 3.2e-117 426.0 332 68.1
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 4.2e-117 425.6 358 62.8
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 2.1e-116 423.3 332 68.1
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 2.1e-116 423.3 320 69.1
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 2.1e-116 423.3 328 66.5
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 6.0e-116 421.8 322 66.1
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 1.3e-115 420.6 328 69.2
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 1.3e-115 420.6 332 67.8
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 3.0e-115 419.5 317 69.1
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 5.1e-115 418.7 332 67.8
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 8.7e-115 417.9 323 67.2
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 1.1e-114 417.5 328 64.9
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 2.5e-114 416.4 322 67.4
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 4.3e-114 415.6 322 67.4
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 9.6e-114 414.5 316 67.7
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 8.1e-113 411.4 383 59.5
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 1.1e-112 411.0 328 67.1
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 5.3e-112 408.7 320 67.5
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 5.3e-112 408.7 319 66.8
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 4.5e-111 405.6 318 69.2
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 4.5e-111 405.6 319 62.4
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.8e-111 405.2 342 63.2
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 7.6e-111 404.8 319 66.8
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 2.9e-110 402.9 328 66.5
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 6.4e-110 401.7 320 65.9
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 6.4e-110 401.7 328 62.8
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 8.4e-110 401.4 397 56.4
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 8.4e-110 401.4 317 62.8
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 8.4e-110 401.4 329 62.3
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 8.4e-110 401.4 328 62.5
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 1.4e-109 400.6 320 65.3
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 2.4e-109 399.8 301 71.8
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 5.4e-109 398.7 332 64.5
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 7.1e-109 398.3 319 64.9
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.0e-107 394.4 317 66.2
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 3.0e-107 392.9 333 59.8
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 5.1e-107 392.1 318 64.2
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 1.5e-106 390.6 319 65.8
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 5.6e-106 388.7 317 66.2
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.6e-105 387.1 319 63.6
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 1.6e-105 387.1 319 63.6
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 3.7e-105 386.0 328 63.7
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 2.4e-104 383.3 330 63.6
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 1.3e-102 377.5 316 62.7
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 2.2e-102 376.7 319 62.4
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 2.9e-102 376.3 337 61.4
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 3.8e-102 375.9 436 52.5
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 1.1e-101 374.4 322 61.2
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.9e-101 373.6 320 61.6
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 1.9e-101 373.6 316 61.4
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 2.4e-101 373.2 274 61.3
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 3.2e-101 372.9 333 61.3
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 4.2e-101 372.5 321 64.5
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 6.0e-100 368.6 321 56.1
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 7.9e-100 368.2 374 50.8
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 7.9e-100 368.2 294 66.7
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.9e-98 363.6 295 67.8
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 2.4e-96 356.7 427 51.1
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 5.3e-96 355.5 320 58.8
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 6.9e-96 355.1 249 67.1
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 2.6e-95 353.2 313 61.3
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 3.4e-95 352.8 320 59.7
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 3.4e-95 352.8 320 58.4
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 7.6e-95 351.7 279 62.0
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 1.3e-94 350.9 317 59.0
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 1.3e-94 350.9 317 58.7
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 1.3e-94 350.9 317 58.7
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 1.3e-94 350.9 319 57.1
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 1.7e-94 350.5 317 59.0
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 8.4e-94 348.2 334 53.6
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 1.9e-93 347.1 319 57.4
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 3.2e-93 346.3 316 57.6
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 1.8e-91 340.5 464 48.5
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 4.3e-90 335.9 326 56.7
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 1.6e-89 334.0 346 56.4
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.1e-88 331.3 320 60.0
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 5.3e-88 328.9 354 55.6
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 9.0e-88 328.2 299 56.2
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 1.5e-87 327.4 360 52.8
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 3.4e-87 326.2 190 73.7
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 3.4e-87 326.2 351 55.0
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 5.0e-86 322.4 313 47.3
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 5.5e-85 318.9 409 49.1
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 2.1e-84 317.0 318 55.0
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 6.1e-84 315.5 373 51.7
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 7.9e-84 315.1 349 53.3
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 1.8e-83 313.9 403 49.6
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 1.8e-83 313.9 353 52.4
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 1.8e-83 313.9 361 52.9
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 8.7e-83 311.6 379 48.0
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 3.7e-81 306.2 333 47.1
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 6.3e-81 305.4 305 53.4
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 8.2e-81 305.1 378 51.6
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 2.4e-80 303.5 404 47.5
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 2.4e-80 303.5 413 47.2
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 5.9e-79 298.9 309 51.5
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 1.9e-77 293.9 325 52.0
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 1.0e-75 288.1 320 50.9
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.7e-73 280.8 319 52.0
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 5.0e-70 269.2 330 51.8
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.0e-62 245.0 188 61.7
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.3e-62 244.6 314 44.6
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 2.2e-57 227.3 334 44.0
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 2.8e-57 226.9 338 43.8
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 1.9e-53 214.2 313 45.0
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 5.2e-51 206.1 189 47.1
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 1.7e-49 201.1 335 40.0
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 4.1e-48 196.4 165 57.0
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 5.9e-39 166.0 93 77.4
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 3.5e-31 140.2 74 82.4
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 1.6e-28 131.3 69 82.6
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 1.2e-20 105.1 134 38.1
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 6.6e-14 82.8 92 58.7
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 9.5e-13 79.0 38 84.2
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 3.6e-12 77.0 37 83.8
Cpa.g.c29767.2 Carica papaya HOM05D003920 ORTHO05D004877 8.9e-11 72.4 54 64.8


User provided reference genes

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