Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 1.6e-132 476.1 243 100.0
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 9.2e-128 460.3 237 99.2
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 2.2e-73 279.6 218 69.3
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 3.9e-70 268.9 144 95.8
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 1.1e-69 267.3 218 64.2
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 2.5e-69 266.2 211 65.9
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 1.3e-68 263.8 210 65.7
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 1.8e-67 260.0 217 63.1
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 5.9e-66 255.0 222 61.3
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 7.7e-66 254.6 214 63.1
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 1.0e-65 254.2 211 64.0
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 2.2e-65 253.1 214 62.6
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 1.4e-64 250.4 216 64.8
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 3.2e-64 249.2 210 64.8
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 9.4e-64 247.7 210 64.8
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 1.0e-62 244.2 208 63.5
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 2.3e-62 243.0 215 61.9
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 3.3e-61 239.2 233 57.9
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 9.7e-61 237.7 213 60.1
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 9.7e-61 237.7 215 60.0
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 1.3e-60 237.3 212 59.9
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.4e-59 233.8 211 61.1
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 2.6e-58 229.6 217 59.0
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 3.4e-58 229.2 216 60.2
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 1.3e-57 227.3 210 59.5
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 1.1e-56 224.2 212 59.4
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 1.4e-56 223.8 215 58.1
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 2.5e-56 223.0 220 55.5
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 4.2e-56 222.2 218 56.0
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 7.2e-56 221.5 222 56.8
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 1.2e-55 220.7 218 56.9
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 2.7e-55 219.5 215 56.7
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 2.7e-55 219.5 211 58.3
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 7.9e-55 218.0 218 57.3
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 2.3e-54 216.5 218 56.0
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 1.1e-53 214.2 213 54.9
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 3.3e-53 212.6 220 57.7
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 5.7e-53 211.8 220 55.0
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 5.7e-53 211.8 221 53.8
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 2.2e-52 209.9 217 53.5
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 2.2e-52 209.9 173 63.6
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 2.2e-52 209.9 233 52.8
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 2.8e-52 209.5 173 64.2
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.8e-52 209.5 219 54.8
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 4.8e-52 208.8 227 51.5
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 8.2e-52 208.0 218 53.2
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 1.8e-51 206.8 217 56.2
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 3.1e-51 206.1 216 55.6
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 5.3e-51 205.3 214 54.7
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 7.0e-51 204.9 218 51.8
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 7.0e-51 204.9 220 56.8
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 1.5e-50 203.8 216 55.6
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 1.5e-50 203.8 217 54.8
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 5.9e-50 201.8 228 50.9
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 5.9e-50 201.8 218 54.1
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 2.9e-49 199.5 222 50.5
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 6.5e-49 198.4 216 53.7
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 2.5e-48 196.4 217 53.9
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 2.1e-47 193.4 213 49.8
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.7e-47 193.0 188 57.4
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 4.7e-47 192.2 175 61.1
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 4.7e-47 192.2 184 58.2
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 6.1e-47 191.8 217 51.2
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 1.0e-46 191.0 235 48.1
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 1.1e-45 187.6 179 57.0
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 2.0e-45 186.8 211 47.9
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 4.4e-45 185.7 217 49.3
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 5.7e-45 185.3 214 48.1
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 9.7e-45 184.5 216 49.5
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 1.7e-44 183.7 219 49.3
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 2.8e-44 183.0 217 47.9
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 2.8e-44 183.0 185 54.6
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 6.3e-44 181.8 217 47.0
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 1.4e-43 180.6 223 48.4
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.8e-43 180.3 214 47.7
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 7.0e-43 178.3 219 48.4
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 9.1e-43 177.9 300 40.3
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 9.1e-43 177.9 173 54.3
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 1.3e-41 174.1 225 48.0
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 2.9e-41 172.9 225 47.6
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 2.9e-41 172.9 210 48.6
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 2.9e-41 172.9 219 44.7
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 2.5e-40 169.9 195 50.3
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 4.2e-40 169.1 218 44.5
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 7.2e-40 168.3 214 48.1
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 1.2e-39 167.5 212 49.1
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 2.1e-39 166.8 192 47.9
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 3.0e-38 162.9 209 50.2
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 5.2e-38 162.2 188 50.5
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 1.2e-37 161.0 190 50.5
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 2.6e-37 159.8 194 45.4
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 2.8e-36 156.4 211 44.1
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 4.8e-36 155.6 179 51.4
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 6.3e-36 155.2 141 61.0
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 8.3e-36 154.8 141 58.2
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 4.1e-35 152.5 141 57.4
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 4.1e-35 152.5 136 60.3
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 5.3e-35 152.1 119 65.5
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 2.7e-34 149.8 138 55.1
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 3.5e-34 149.4 138 55.1
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 2.9e-33 146.4 177 47.5
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 6.5e-33 145.2 214 43.5
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 1.1e-32 144.4 196 43.9
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 1.1e-32 144.4 188 43.6
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 1.5e-32 144.1 211 43.1
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 3.2e-32 142.9 214 42.5
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 3.2e-32 142.9 209 44.5
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 3.2e-32 142.9 165 47.3
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 4.2e-32 142.5 196 43.9
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 4.2e-32 142.5 166 47.0
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 5.5e-32 142.1 208 43.8
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 9.4e-32 141.4 170 48.8
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 9.4e-32 141.4 217 42.4
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 1.6e-31 140.6 213 42.3
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 4.7e-31 139.0 208 42.3
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 8.0e-31 138.3 211 39.8
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 6.8e-30 135.2 197 42.1
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 6.8e-30 135.2 180 43.9
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 8.8e-30 134.8 173 43.4
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 2.0e-29 133.7 217 39.6
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 2.0e-29 133.7 216 39.4
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 3.4e-29 132.9 185 40.5
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 5.7e-29 132.1 181 41.4
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 7.5e-29 131.7 136 52.2
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 9.8e-29 131.3 180 42.2
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 9.8e-29 131.3 151 49.7
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 1.3e-28 131.0 131 50.4
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 2.2e-28 130.2 136 52.9
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 6.3e-28 128.6 176 43.8
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 1.1e-27 127.9 175 45.1
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 3.1e-27 126.3 195 36.9
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 1.6e-26 124.0 139 47.5
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 1.6e-26 124.0 122 56.6
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 2.7e-26 123.2 131 51.1
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 2.5e-24 116.7 178 39.9
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 4.2e-24 115.9 135 43.7
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 9.5e-24 114.8 118 55.1
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 2.1e-23 113.6 211 37.9
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 2.1e-23 113.6 102 55.9
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 4.7e-23 112.5 151 41.7
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 1.4e-22 110.9 151 41.7
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 8.9e-22 108.2 131 48.1
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.5e-21 107.5 82 64.6
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 2.0e-21 107.1 138 42.8
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 2.8e-20 103.2 200 35.5
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.7e-20 102.8 244 35.2
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 1.1e-19 101.3 181 38.1
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 1.8e-19 100.5 103 52.4
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 5.0e-17 92.4 113 40.7
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 5.0e-17 92.4 80 58.8
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 2.8e-15 86.7 74 62.2
Sabra03G0149000 Salix brachista HOM05D004603 ORTHO05D005244 2.8e-15 86.7 221 37.1
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 4.4e-13 79.3 136 35.3
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 5.8e-13 79.0 98 45.9
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 9.8e-13 78.2 73 56.2
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 6.4e-12 75.5 117 34.2
FvH4_3g19550 Fragaria vesca HOM05D004603 ORTHO05D005244 6.4e-12 75.5 88 48.9
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 8.3e-12 75.1 112 37.5
FAN11G0237 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.4e-11 74.3 88 48.9
AagrBONN_evm.TU.Sc2ySwM_368.759 Anthoceros agrestis HOM05D004603 ORTHO05D005244 3.2e-11 73.2 128 32.8
ECA248G0821 Erigeron canadensis HOM05D004603 ORTHO05D005244 2.3e-09 67.0 98 40.8
BolC6t36282H Brassica oleracea HOM05D000499 ORTHO05D002825 3.0e-09 66.6 96 39.6
BraA09t38742Z Brassica rapa HOM05D000499 ORTHO05D002825 6.6e-09 65.5 97 39.2
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 8.6e-09 65.1 101 39.6
Lj1C1244T2 Lonicera japonica HOM05D004603 ORTHO05D005244 2.5e-08 63.5 85 40.0
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 5.6e-08 62.4 81 43.2


User provided reference genes

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