Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 9.8e-109 396.7 190 100.0
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 2.0e-106 389.0 187 99.5
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 2.5e-80 302.4 186 77.4
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 1.4e-78 296.6 186 75.3
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 4.4e-77 291.6 186 70.4
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 1.1e-75 287.0 189 72.5
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 3.2e-75 285.4 183 73.8
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 3.2e-75 285.4 187 70.1
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 2.1e-74 282.7 186 69.9
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 4.6e-74 281.6 187 72.2
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 8.6e-73 277.3 189 69.8
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 8.6e-73 277.3 189 69.8
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 1.5e-72 276.6 189 70.9
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 2.5e-72 275.8 187 69.0
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 5.6e-72 274.6 186 66.1
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 7.3e-72 274.2 187 68.4
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 1.2e-71 273.5 186 68.8
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 1.6e-71 273.1 189 68.3
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 1.6e-71 273.1 187 66.3
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 2.1e-71 272.7 186 69.4
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 6.2e-71 271.2 186 67.2
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 5.2e-70 268.1 190 70.0
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 8.9e-70 267.3 186 66.7
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 8.9e-70 267.3 186 68.3
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 1.7e-68 263.1 186 68.3
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 2.9e-68 262.3 186 68.3
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 2.4e-67 259.2 187 67.9
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 7.1e-67 257.7 186 66.7
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.6e-66 256.5 186 64.0
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 6.0e-66 254.6 186 64.0
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 1.0e-65 253.8 186 65.6
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 1.3e-65 253.4 186 62.9
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 2.3e-65 252.7 188 63.3
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 3.0e-65 252.3 186 64.5
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 1.1e-64 250.4 192 62.0
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 4.3e-64 248.4 181 65.2
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 7.3e-64 247.7 186 62.4
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 7.3e-64 247.7 186 61.3
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 9.6e-64 247.3 186 62.4
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 2.1e-63 246.1 185 62.7
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 6.2e-63 244.6 186 62.9
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 1.1e-62 243.8 183 63.4
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 1.8e-62 243.0 186 62.4
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 2.4e-62 242.7 183 62.8
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 2.4e-62 242.7 186 65.1
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 5.2e-62 241.5 187 61.0
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 2.0e-61 239.6 186 62.9
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 9.9e-61 237.3 169 66.9
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 1.7e-60 236.5 187 58.3
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 3.8e-60 235.3 187 59.9
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 8.4e-60 234.2 186 62.4
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 1.1e-59 233.8 187 64.2
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 1.4e-59 233.4 186 58.1
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 4.2e-59 231.9 187 55.6
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 4.2e-59 231.9 185 63.8
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 7.1e-59 231.1 184 63.6
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 1.2e-58 230.3 186 57.5
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 1.6e-58 229.9 187 56.1
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 2.1e-58 229.6 186 58.1
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 3.5e-58 228.8 183 58.5
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 7.8e-58 227.6 186 60.8
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 3.9e-57 225.3 186 57.0
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 5.1e-57 224.9 186 58.1
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 6.6e-57 224.6 188 55.9
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 6.6e-57 224.6 187 55.6
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 1.9e-56 223.0 183 56.8
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 1.9e-56 223.0 187 56.7
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 1.9e-56 223.0 186 59.7
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 9.6e-56 220.7 186 56.5
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 3.6e-55 218.8 154 67.5
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 1.4e-54 216.9 185 59.5
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 1.8e-54 216.5 181 58.0
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 3.4e-53 212.2 190 55.8
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 1.3e-52 210.3 183 57.4
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 5.4e-51 204.9 183 54.6
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 8.7e-49 197.6 184 55.4
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 2.5e-48 196.1 176 55.7
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 2.5e-48 196.1 168 55.4
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 1.4e-46 190.3 168 54.8
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 1.8e-46 189.9 186 51.6
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.2e-45 187.2 146 61.6
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 7.6e-45 184.5 146 59.6
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 1.9e-43 179.9 155 58.7
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 4.2e-43 178.7 188 48.9
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 1.6e-39 166.8 96 80.2
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 1.0e-36 157.5 154 54.5
MD00G1214400 Malus domestica HOM05D006558 ORTHO05D008424 1.1e-30 137.5 109 61.5
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 6.9e-30 134.8 190 40.0
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 5.5e-27 125.2 72 79.2
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 1.2e-26 124.0 71 81.7
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 2.3e-25 119.8 71 76.1
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 5.1e-25 118.6 141 46.8
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 6.7e-25 118.2 227 33.5
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 4.8e-23 112.1 170 35.9
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 9.0e-22 107.8 71 69.0
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 8.5e-20 101.3 60 81.7
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 1.9e-19 100.1 231 28.1
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 6.7e-17 91.7 172 33.1
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 6.7e-17 91.7 172 33.1
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 1.5e-16 90.5 76 55.3
CAN.G261.15 Capsicum annuum HOM05D003152 ORTHO05D034019 3.7e-15 85.9 58 62.1
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 5.9e-13 78.6 83 45.8
Medtr3g019030 Medicago truncatula HOM05D006558 ORTHO05D034019 5.9e-13 78.6 43 74.4
Sopen05g017900 Solanum pennellii HOM05D028470 ORTHO05D037706 3.9e-09 65.9 73 45.2
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 5.1e-09 65.5 40 67.5
Solyc05g150129.1 Solanum lycopersicum HOM05D006558 ORTHO05D008424 1.1e-08 64.3 48 60.4
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 2.4e-06 56.6 39 61.5


User provided reference genes

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