Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 5.0e-69 265.0 214 100.0
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 1.3e-48 197.2 211 72.0
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 1.7e-48 196.8 212 69.3
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 2.8e-48 196.1 214 79.0
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 8.3e-48 194.5 207 56.5
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 5.4e-47 191.8 207 54.6
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 5.9e-46 188.3 207 49.3
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 7.7e-46 188.0 207 66.7
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 7.7e-46 188.0 225 59.6
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 7.7e-46 188.0 207 63.3
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 1.0e-45 187.6 220 56.4
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 1.7e-45 186.8 207 65.7
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 2.3e-45 186.4 207 58.5
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.9e-45 186.0 208 68.3
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 1.9e-44 183.3 207 64.3
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 4.3e-44 182.2 207 75.4
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 7.3e-44 181.4 210 68.1
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 7.3e-44 181.4 207 59.9
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 9.5e-44 181.0 202 58.4
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.1e-43 179.9 219 59.8
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.6e-43 179.1 211 67.3
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 3.6e-43 179.1 215 62.3
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 1.8e-42 176.8 208 60.6
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.8e-42 176.8 209 58.4
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 5.2e-42 175.3 214 63.1
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 1.2e-41 174.1 217 65.4
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 1.5e-41 173.7 227 67.4
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 1.5e-41 173.7 221 64.7
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 4.4e-41 172.2 217 65.0
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.3e-40 170.6 211 49.8
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 2.2e-40 169.9 219 58.0
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 2.2e-40 169.9 212 58.5
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 3.7e-40 169.1 216 57.4
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 3.7e-40 169.1 207 65.2
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 4.9e-40 168.7 209 57.9
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 4.9e-40 168.7 207 61.8
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 4.9e-40 168.7 207 61.8
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 4.9e-40 168.7 219 58.0
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 8.3e-40 167.9 211 53.6
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 8.3e-40 167.9 223 52.5
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.4e-39 167.2 208 51.0
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 2.4e-39 166.4 210 64.3
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 7.0e-39 164.9 207 60.9
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 7.0e-39 164.9 211 46.0
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 7.0e-39 164.9 205 46.8
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 9.2e-39 164.5 207 51.2
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 1.2e-38 164.1 218 67.4
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 1.2e-38 164.1 213 55.9
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 2.0e-38 163.3 229 51.1
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 4.6e-38 162.2 207 61.8
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 5.9e-38 161.8 212 47.2
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 5.9e-38 161.8 205 59.5
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 7.8e-38 161.4 244 54.9
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 7.8e-38 161.4 207 44.0
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 7.8e-38 161.4 207 46.4
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.0e-37 161.0 212 67.5
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 1.7e-37 160.2 207 62.3
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 2.3e-37 159.8 203 55.7
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 3.0e-37 159.5 214 64.5
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 3.9e-37 159.1 209 60.8
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 5.0e-37 158.7 237 64.1
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 5.0e-37 158.7 205 72.7
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 6.6e-37 158.3 218 59.6
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 4.3e-36 155.6 209 60.3
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 5.6e-36 155.2 207 51.2
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 9.5e-36 154.5 226 66.4
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 9.5e-36 154.5 209 47.4
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 2.8e-35 152.9 207 58.0
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 3.6e-35 152.5 201 79.1
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 6.2e-35 151.8 247 47.0
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 1.0e-34 151.0 207 61.8
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 3.1e-34 149.4 209 58.9
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 3.1e-34 149.4 202 50.0
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 3.1e-34 149.4 202 47.5
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 4.0e-34 149.1 208 52.9
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 5.2e-34 148.7 205 59.0
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 5.2e-34 148.7 219 47.0
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 5.2e-34 148.7 209 45.5
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 8.9e-34 147.9 207 45.4
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.2e-33 147.5 206 59.7
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.5e-33 147.1 208 54.8
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 1.5e-33 147.1 214 54.2
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 3.4e-33 146.0 234 62.8
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 5.8e-33 145.2 209 51.2
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 9.8e-33 144.4 147 55.8
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 9.8e-33 144.4 205 58.5
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 1.7e-32 143.7 211 66.4
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 2.2e-32 143.3 207 52.2
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 2.2e-32 143.3 217 57.1
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 2.2e-32 143.3 212 41.0
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 3.7e-32 142.5 211 44.1
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 4.9e-32 142.1 205 51.7
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 1.4e-31 140.6 210 59.5
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.4e-31 139.8 141 58.9
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 7.0e-31 138.3 215 52.1
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 9.2e-31 137.9 205 39.0
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 1.2e-30 137.5 215 52.1
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 1.6e-30 137.1 222 51.4
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 1.6e-30 137.1 235 42.6
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 2.7e-30 136.3 207 70.0
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.5e-30 136.0 205 38.5
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 3.5e-30 136.0 215 54.0
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 6.0e-30 135.2 222 54.1
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 6.0e-30 135.2 222 54.1
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 7.8e-30 134.8 218 47.2
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 7.8e-30 134.8 234 52.6
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 1.7e-29 133.7 208 48.1
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 2.3e-29 133.3 199 46.2
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 2.3e-29 133.3 208 48.1
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 2.3e-29 133.3 208 48.1
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.0e-29 132.9 207 48.3
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 3.9e-29 132.5 208 48.6
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 5.0e-29 132.1 217 72.4
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 1.5e-28 130.6 213 43.7
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 1.5e-28 130.6 209 47.8
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 3.3e-28 129.4 218 46.8
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 1.6e-27 127.1 213 50.7
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 1.6e-27 127.1 215 52.6
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 2.1e-27 126.7 208 44.7
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 2.8e-27 126.3 213 51.2
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 3.6e-27 125.9 204 47.1
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 4.7e-27 125.6 216 50.0
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 8.1e-27 124.8 235 46.0
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 8.1e-27 124.8 216 50.5
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 8.1e-27 124.8 213 45.1
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 1.1e-26 124.4 216 41.7
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 8.9e-26 121.3 211 39.8
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 1.2e-25 120.9 235 50.2
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.2e-25 120.9 206 45.1
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 5.8e-25 118.6 207 40.1
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 5.8e-25 118.6 227 47.6
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 5.8e-25 118.6 202 37.1
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 9.8e-25 117.9 226 47.8
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 1.3e-24 117.5 204 34.8
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 1.7e-24 117.1 215 45.6
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 2.2e-24 116.7 204 35.8
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 2.2e-24 116.7 204 35.8
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 2.2e-24 116.7 209 42.6
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 2.9e-24 116.3 151 44.4
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 1.1e-23 114.4 206 45.6
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 3.2e-23 112.8 209 47.8
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 4.1e-23 112.5 219 34.2
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 1.2e-22 110.9 212 38.2
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 6.0e-22 108.6 212 38.7
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 1.7e-21 107.1 135 51.9
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 2.3e-21 106.7 150 40.7
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 6.6e-21 105.1 140 50.7
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 1.5e-20 104.0 212 37.7
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 1.5e-20 104.0 140 46.4
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 1.5e-20 104.0 110 70.9
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 4.3e-20 102.4 212 37.7
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 9.5e-20 101.3 204 33.3
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 9.5e-20 101.3 204 33.3
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 9.5e-20 101.3 204 33.3
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 6.8e-18 95.1 237 34.6
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 6.8e-18 95.1 207 51.2
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.0e-17 93.6 207 50.7
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 4.4e-17 92.4 207 50.7
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 4.4e-17 92.4 153 48.4
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 7.6e-17 91.7 150 48.7
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 7.6e-17 91.7 150 48.7
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 1.7e-16 90.5 150 49.3
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 1.7e-16 90.5 150 49.3
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.9e-16 89.7 125 46.4
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 3.8e-16 89.4 200 31.5
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 4.1e-15 85.9 157 48.4
Atru.chr1.737 Acer truncatum HOM05D003968 ORTHO05D004077 9.2e-15 84.7 38 97.4
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 3.3e-12 76.3 164 37.8
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 7.3e-12 75.1 150 44.7
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 5.2e-10 68.9 109 50.5
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 1.5e-09 67.4 46 63.0
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 4.4e-09 65.9 35 77.1
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.1e-07 61.2 210 24.3
SEGI_20858 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 1.1e-07 61.2 153 24.8
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.4e-07 60.8 143 27.3
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 7.1e-07 58.5 140 29.3
Lalb_Chr22g0349911 Lupinus albus HOM05D003968 ORTHO05D004077 1.6e-06 57.4 80 66.2
SEGI_23541 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 1.6e-06 57.4 142 28.2
SMO347G0048 Selaginella moellendorffii HOM05D022619 ORTHO05D026045 2.1e-06 57.0 158 49.4
Aqoxy2G01020 Aquilegia oxysepala HOM05D001667 ORTHO05D001508 4.6e-06 55.8 140 23.6


User provided reference genes

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