Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.2370 Acer truncatum HOM05D005688 ORTHO05D006630 9.9e-192 673.3 348 100.0
Ciclev10032000m.g Citrus clementina HOM05D005688 ORTHO05D006630 4.5e-128 461.8 277 83.4
TWI75G1512 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 1.2e-120 437.2 281 79.4
Thecc.02G201300 Theobroma cacao HOM05D005688 ORTHO05D006630 1.2e-117 427.2 280 77.1
TWI36G1544 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 3.6e-117 425.6 281 77.9
Manes.13G008600 Manihot esculenta HOM05D005688 ORTHO05D006630 6.1e-117 424.9 287 78.0
ClCG07G015390 Citrullus lanatus HOM05D005688 ORTHO05D006630 2.3e-116 422.9 294 76.2
Duzib251G0174 Durio zibethinus HOM05D005688 ORTHO05D006630 3.0e-116 422.5 280 75.7
Gohir.D04G139300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 1.2e-115 420.6 280 75.7
Manes.12G008200 Manihot esculenta HOM05D005688 ORTHO05D006630 1.5e-115 420.2 290 76.2
Gohir.A04G100300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 3.4e-115 419.1 280 75.4
Gorai.012G124400 Gossypium raimondii HOM05D005688 ORTHO05D006630 3.4e-115 419.1 280 76.1
Prupe.1G222300 Prunus persica HOM05D005688 ORTHO05D006630 9.8e-115 417.5 300 73.7
Potri.003G168300 Populus trichocarpa HOM05D005688 ORTHO05D006630 1.3e-114 417.2 281 76.5
Aa31LG3G14570 Aethionema arabicum HOM05D005688 ORTHO05D006630 2.2e-114 416.4 289 75.4
MELO3C017746.2 Cucumis melo HOM05D005688 ORTHO05D006630 2.2e-114 416.4 295 74.2
FvH4_4g23370 Fragaria vesca HOM05D005688 ORTHO05D006630 2.8e-114 416.0 294 74.1
FAN12G1631 Fragaria x ananassa HOM05D005688 ORTHO05D006630 2.8e-114 416.0 294 74.1
CiPaw.06G105500 Carya illinoinensis HOM05D005688 ORTHO05D006630 4.9e-114 415.2 296 73.6
CsaV3_4G002970 Cucumis sativus L. HOM05D005688 ORTHO05D006630 8.3e-114 414.5 295 74.2
MD16G1123300 Malus domestica HOM05D005688 ORTHO05D006630 1.8e-113 413.3 289 74.7
Phvul.008G017000 Phaseolus vulgaris HOM05D005688 ORTHO05D006630 1.8e-113 413.3 293 74.4
FAN07G0693 Fragaria x ananassa HOM05D005688 ORTHO05D006630 5.4e-113 411.8 295 73.2
FAN17G3098 Fragaria x ananassa HOM05D005688 ORTHO05D006630 5.4e-113 411.8 295 73.2
Potri.001G059700 Populus trichocarpa HOM05D005688 ORTHO05D006630 5.4e-113 411.8 281 75.1
Sabra03G0123400 Salix brachista HOM05D005688 ORTHO05D006630 1.2e-112 410.6 282 75.9
RcHm_v2.0_Chr4g0429761 Rosa chinensis HOM05D005688 ORTHO05D006630 1.6e-112 410.2 294 74.8
Cfa009390 Carpinus fangiana HOM05D005688 ORTHO05D006630 4.5e-112 408.7 281 76.5
CiPaw.05G106800 Carya illinoinensis HOM05D005688 ORTHO05D006630 1.7e-111 406.8 284 77.5
Duzib248G1308 Durio zibethinus HOM05D005688 ORTHO05D006630 2.9e-111 406.0 285 73.3
C09p63990 Brassica napus HOM05D000918 ORTHO05D006630 5.0e-111 405.2 289 72.3
BolC9t59237H Brassica oleracea HOM05D005688 ORTHO05D006630 6.6e-111 404.8 287 72.5
CANSAT80G0816 Cannabis sativa HOM05D005688 ORTHO05D006630 8.6e-111 404.4 286 73.8
Carub.0006s1127 Capsella rubella HOM05D005688 ORTHO05D006630 1.9e-110 403.3 290 72.8
Glyma.02G097000 Glycine max HOM05D005688 ORTHO05D006630 1.9e-110 403.3 291 72.2
Sed0014060 Sechium edule HOM05D005688 ORTHO05D006630 1.9e-110 403.3 296 71.6
CARHR200370 Cardamine hirsuta HOM05D005688 ORTHO05D006630 2.5e-110 402.9 291 72.5
Haze_12451 Corylus avellana HOM05D005688 ORTHO05D006630 2.5e-110 402.9 290 74.5
Glyma.18G284500 Glycine max HOM05D005688 ORTHO05D006630 1.6e-109 400.2 289 73.0
QL03p051598 Quercus lobata HOM05D005688 ORTHO05D006630 1.6e-109 400.2 307 70.0
arahy.Tifrunner.gnm1.ann1.97E8EB Arachis hypogaea HOM05D005688 ORTHO05D006630 2.1e-109 399.8 305 69.2
arahy.Tifrunner.gnm1.ann1.N9VQT0 Arachis hypogaea HOM05D005688 ORTHO05D006630 2.1e-109 399.8 305 69.2
Psat3g187080 Pisum sativum HOM05D005688 ORTHO05D006630 2.1e-109 399.8 286 72.7
A03p05810 Brassica napus HOM05D000918 ORTHO05D000791 2.8e-109 399.4 293 71.0
COL.COLO4_27347 Corchorus olitorius HOM05D005688 ORTHO05D006630 2.8e-109 399.4 280 73.9
BraA03t09920Z Brassica rapa HOM05D000918 ORTHO05D006630 3.6e-109 399.1 293 70.6
AL6G23700 Arabidopsis lyrata HOM05D005688 ORTHO05D006630 4.7e-109 398.7 291 72.2
Ca_07133_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 4.7e-109 398.7 296 72.3
Ca_28122_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 4.7e-109 398.7 296 72.3
Lalb_Chr17g0336391 Lupinus albus HOM05D005688 ORTHO05D006630 6.1e-109 398.3 288 71.5
Hma1.2p1_0065F.1_g035040 Hydrangea macrophylla HOM05D005688 ORTHO05D006630 1.4e-108 397.1 294 71.1
C03p06760 Brassica napus HOM05D000918 ORTHO05D006630 2.3e-108 396.4 293 70.3
BolC3t13183H Brassica oleracea HOM05D000918 ORTHO05D006630 2.3e-108 396.4 293 70.3
Lalb_Chr10g0092021 Lupinus albus HOM05D005688 ORTHO05D006630 2.3e-108 396.4 295 71.9
AT5G13100 Arabidopsis thaliana HOM05D005688 ORTHO05D006630 3.0e-108 396.0 291 71.8
THA.LOC104810209 Tarenaya hassleriana HOM05D005688 ORTHO05D006630 3.0e-108 396.0 289 73.7
Thhalv10013944m.g Eutrema salsugineum HOM05D005688 ORTHO05D006630 5.2e-108 395.2 293 71.7
Medtr7g022390 Medicago truncatula HOM05D005688 ORTHO05D006630 5.2e-108 395.2 291 71.8
Sp6g30880 Schrenkiella parvula HOM05D005688 ORTHO05D006630 1.5e-107 393.7 294 70.7
A10p25100 Brassica napus HOM05D000918 ORTHO05D006630 2.0e-107 393.3 290 70.0
Sabra01G0042800 Salix brachista HOM05D005688 ORTHO05D006630 3.4e-107 392.5 280 73.2
BraA10t44572Z Brassica rapa HOM05D005688 ORTHO05D006630 5.7e-107 391.7 291 70.1
Actinidia09624 Actinidia chinensis HOM05D005688 ORTHO05D006630 7.5e-107 391.3 279 72.0
Lj6A830T28 Lonicera japonica HOM05D005688 ORTHO05D006630 7.5e-107 391.3 279 73.1
Lj1g0000862 Lotus japonicus HOM05D005688 ORTHO05D006630 7.5e-107 391.3 305 66.9
Dinv17591 Davidia involucrata HOM05D005688 ORTHO05D006630 1.7e-106 390.2 286 69.9
Sed0011472 Sechium edule HOM05D005688 ORTHO05D006630 2.2e-106 389.8 286 71.0
CSS0036763 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 2.9e-106 389.4 280 71.4
Sc04g0010310 Simmondsia chinensis HOM05D005688 ORTHO05D006630 2.9e-106 389.4 277 71.8
Nitab4.5_0002277g0010 Nicotiana tabacum HOM05D005688 ORTHO05D006630 8.3e-106 387.9 284 70.8
Dinv11693 Davidia involucrata HOM05D005688 ORTHO05D006630 2.4e-105 386.3 284 69.7
Nitab4.5_0000251g0050 Nicotiana tabacum HOM05D005688 ORTHO05D006630 9.2e-105 384.4 286 69.6
PGR102G0765 Punica granatum HOM05D005688 ORTHO05D006630 1.2e-104 384.0 280 71.8
TAR629G3099 Trochodendron aralioides HOM05D005688 ORTHO05D006630 1.6e-104 383.6 280 69.6
Solyc05g015980.3 Solanum lycopersicum HOM05D005688 ORTHO05D006630 4.6e-104 382.1 281 70.5
Sopen05g011970 Solanum pennellii HOM05D005688 ORTHO05D006630 4.6e-104 382.1 281 70.5
CSS0038243 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 1.3e-103 380.6 287 69.3
PGSC0003DMG400010801 Solanum tuberosum HOM05D005688 ORTHO05D006630 3.0e-103 379.4 281 69.8
MSTRG.481 Avicennia marina HOM05D005688 ORTHO05D006630 2.5e-102 376.3 278 68.7
Lsat_1_v5_gn_4_280 Lactuca sativa HOM05D005688 ORTHO05D006630 2.5e-102 376.3 291 68.0
CAN.G163.3 Capsicum annuum HOM05D005688 ORTHO05D006630 1.6e-101 373.6 287 68.3
Eucgr.B03525 Eucalyptus grandis HOM05D005688 ORTHO05D006630 1.6e-101 373.6 285 70.2
SalBow2G0527 Salvia bowleyana HOM05D005688 ORTHO05D006630 2.1e-101 373.2 275 69.1
TPR.G2946 Trifolium pratense HOM05D005688 ORTHO05D006630 6.2e-101 371.7 232 81.9
Migut.E00005 Erythranthe guttata HOM05D005688 ORTHO05D006630 3.1e-100 369.4 279 67.7
HanXRQChr17g0568911 Helianthus annuus HOM05D005688 ORTHO05D006630 4.0e-100 369.0 287 67.6
Nn3g16394 Nelumbo nucifera HOM05D005688 ORTHO05D006630 2.0e-99 366.7 279 67.4
Actinidia39795 Actinidia chinensis HOM05D005688 ORTHO05D006630 2.6e-99 366.3 244 76.2
DCAR_024659 Daucus carota HOM05D005688 ORTHO05D006630 5.8e-99 365.2 278 67.3
TAR371G0171 Trochodendron aralioides HOM05D005688 ORTHO05D006630 7.5e-99 364.8 277 68.6
Rhsim12G0023600 Rhododendron simsii HOM05D005688 ORTHO05D006630 1.3e-98 364.0 296 65.5
BcaB01g05377 Brassica carinata HOM05D005688 ORTHO05D006630 2.2e-98 363.2 293 66.2
ECA234G1377 Erigeron canadensis HOM05D005688 ORTHO05D006630 1.2e-96 357.5 285 65.6
unitig_26.g10416 Utricularia gibba HOM05D005688 ORTHO05D006630 6.0e-96 355.1 281 64.4
vmacro01046 Vaccinium macrocarpon HOM05D005688 ORTHO05D006630 1.7e-95 353.6 308 61.7
Hund06107 Selenicereus undatus HOM05D005688 ORTHO05D006630 3.9e-95 352.4 282 67.7
Aqoxy3G01629 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 6.2e-93 345.1 285 64.2
CDE05G3530 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 6.8e-92 341.7 278 63.3
Peaxi162Scf00128g01523 Petunia axillaris HOM05D005688 ORTHO05D006630 1.2e-91 340.9 296 62.5
AUR62028899 Chenopodium quinoa HOM05D005688 ORTHO05D006630 3.2e-89 332.8 281 61.6
CDE05G2516 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 7.1e-89 331.6 278 62.2
MBI07_g18747_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 1.7e-87 327.0 279 61.3
EL10Ac6g13540 Beta vulgaris HOM05D005688 ORTHO05D006630 5.1e-87 325.5 292 59.6
PSO017G1106 Papaver somniferum HOM05D005688 ORTHO05D006630 9.5e-86 321.2 295 59.0
PSO478G0501 Papaver somniferum HOM05D005688 ORTHO05D006630 8.1e-85 318.2 298 57.4
HPP92_011533 Vanilla planifolia HOM05D005688 ORTHO05D006630 2.3e-84 316.6 280 60.7
Ah.03g135940 Amaranthus hybridus HOM05D005688 ORTHO05D006630 5.2e-84 315.5 291 59.8
ATR0582G145 Amborella trichopoda HOM05D005688 ORTHO05D006630 8.4e-82 308.1 278 59.0
Zm00001eb127020 Zea mays HOM05D005688 ORTHO05D006630 6.0e-80 302.0 302 54.3
Ah.02g130750 Amaranthus hybridus HOM05D005688 ORTHO05D006630 8.1e-77 291.6 280 56.1
Os01g0102500 Oryza sativa ssp. japonica HOM05D005688 ORTHO05D006630 8.9e-76 288.1 277 53.1
CBR_g40425 Chara braunii HOM05D005688 ORTHO05D006630 5.4e-73 278.9 259 56.0
SEGI_34677 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 7.1e-73 278.5 224 61.2
Mapoly0015s0197 Marchantia polymorpha HOM05D005688 ORTHO05D006630 1.3e-71 274.2 223 62.3
SEGI_28374 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 3.0e-71 273.1 226 60.6
BcaC04g19152 Brassica carinata HOM05D005688 ORTHO05D006630 3.9e-71 272.7 282 57.1
AagrBONN_evm.TU.Sc2ySwM_340.298 Anthoceros agrestis HOM05D005688 ORTHO05D006630 4.0e-68 262.7 276 49.3
ATR0579G080 Amborella trichopoda HOM05D005688 ORTHO05D006630 5.3e-68 262.3 276 51.4
SMO367G0614 Selaginella moellendorffii HOM05D005688 ORTHO05D006630 5.4e-65 252.3 224 54.5
MBI04_g07882_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 2.7e-64 250.0 224 56.2
HPP92_011539 Vanilla planifolia HOM05D005688 ORTHO05D006630 4.6e-64 249.2 280 51.8
AUR62005654 Chenopodium quinoa HOM05D005688 ORTHO05D006630 6.2e-61 238.8 158 73.4
Cpa.g.sc99.54 Carica papaya HOM05D005688 ORTHO05D006630 2.4e-60 236.9 125 91.2
Cc11_g17240 Coffea canephora HOM05D005688 ORTHO05D006630 6.4e-58 228.8 125 86.4
Oeu012651.1 Olea europaea HOM05D005688 ORTHO05D006630 2.4e-57 226.9 202 56.4
GSVIVG01000906001 Vitis vinifera HOM05D005688 ORTHO05D006630 9.3e-57 224.9 125 84.8
unitig_8.g2900 Utricularia gibba HOM05D005688 ORTHO05D006630 1.8e-47 194.1 182 57.7
Cpa.g.sc99.53 Carica papaya HOM05D005688 ORTHO05D006630 4.3e-46 189.5 139 75.5
Actinidia30626 Actinidia chinensis HOM05D001095 ORTHO05D000976 1.8e-39 167.5 107 76.6
Actinidia08052 Actinidia chinensis HOM05D005688 ORTHO05D006630 8.5e-34 148.7 162 53.7
VMungo1383G3355 Vigna mungo HOM05D005688 ORTHO05D006630 5.5e-33 146.0 231 43.3
unitig_8.g2899 Utricularia gibba HOM05D005688 ORTHO05D006630 1.2e-32 144.8 84 81.0
VMungo1215G2942 Vigna mungo HOM05D005688 ORTHO05D006630 7.9e-32 142.1 91 76.9
GSVIVG01010535001 Vitis vinifera HOM05D005688 ORTHO05D006630 3.9e-31 139.8 113 67.3
Aqoxy1G03766 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 4.8e-29 132.9 155 50.3
Actinidia08051 Actinidia chinensis HOM05D005688 ORTHO05D006630 4.8e-21 106.3 57 89.5
Ah.02g130760 Amaranthus hybridus HOM05D005688 ORTHO05D006630 2.2e-18 97.4 117 46.2
QL06p005212 Quercus lobata HOM05D005688 ORTHO05D006630 2.0e-14 84.3 44 84.1
Actinidia34019 Actinidia chinensis HOM05D005688 ORTHO05D006630 4.2e-09 66.6 37 86.5
Actinidia05457 Actinidia chinensis HOM05D005688 ORTHO05D054920 1.0e-07 62.0 70 54.3
Nn4g22254 Nelumbo nucifera HOM05D005688 ORTHO05D006630 3.4e-06 57.0 31 87.1


User provided reference genes

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