Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.2343 Acer truncatum HOM05D006962 ORTHO05D008696 9.8e-78 293.9 209 100.0
Dinv17575 Davidia involucrata HOM05D006962 ORTHO05D008696 1.5e-25 120.6 210 47.6
Ciclev10032798m.g Citrus clementina HOM05D006962 ORTHO05D008696 2.5e-25 119.8 199 36.7
CiPaw.05G108100 Carya illinoinensis HOM05D006962 ORTHO05D008696 3.3e-25 119.4 210 38.6
QL03p052240 Quercus lobata HOM05D006962 ORTHO05D008696 4.8e-24 115.5 211 39.8
Manes.13G010300 Manihot esculenta HOM05D006962 ORTHO05D008696 1.8e-23 113.6 119 48.7
Duzib251G0823 Durio zibethinus HOM05D006962 ORTHO05D008696 4.0e-23 112.5 186 39.2
Cfa009377 Carpinus fangiana HOM05D006962 ORTHO05D008696 2.6e-22 109.8 213 36.2
TWI75G0385 Tripterygium wilfordii HOM05D006962 ORTHO05D008696 1.7e-21 107.1 204 35.8
Haze_12436 Corylus avellana HOM05D006962 ORTHO05D008696 1.1e-20 104.4 94 58.5
Potri.001G057700 Populus trichocarpa HOM05D006962 ORTHO05D008696 1.1e-20 104.4 80 63.8
Prupe.1G224100 Prunus persica HOM05D006962 ORTHO05D008696 1.4e-20 104.0 136 46.3
Thecc.02G205200 Theobroma cacao HOM05D006962 ORTHO05D008696 5.5e-20 102.1 164 39.0
arahy.Tifrunner.gnm1.ann1.AWLH2F Arachis hypogaea HOM05D006962 ORTHO05D008696 7.1e-20 101.7 139 50.4
VMungo1383G1469 Vigna mungo HOM05D006962 ORTHO05D008696 9.3e-20 101.3 97 55.7
ECA234G1956 Erigeron canadensis HOM05D006962 ORTHO05D008696 1.6e-19 100.5 112 44.6
Glyma.18G005200 Glycine max HOM05D006962 ORTHO05D008696 1.6e-19 100.5 158 39.9
Rhsim12G0024900 Rhododendron simsii HOM05D006962 ORTHO05D008696 1.6e-19 100.5 120 48.3
GSVIVG01010505001 Vitis vinifera HOM05D006962 ORTHO05D008696 1.6e-19 100.5 127 44.9
Ca_16448_v3 Cicer arietinum L. HOM05D006962 ORTHO05D008696 2.1e-19 100.1 97 55.7
Cc11_g17050 Coffea canephora HOM05D006962 ORTHO05D008696 2.1e-19 100.1 91 59.3
Sabra01G0041700 Salix brachista HOM05D000660 ORTHO05D000766 2.1e-19 100.1 80 61.2
Sed0011154 Sechium edule HOM05D006962 ORTHO05D008696 4.6e-19 99.0 97 51.5
HanXRQChr08g0214941 Helianthus annuus HOM05D006962 ORTHO05D008696 7.9e-19 98.2 135 40.0
Peaxi162Scf00128g01332 Petunia axillaris HOM05D006962 ORTHO05D008696 7.9e-19 98.2 139 37.4
Eucgr.B03508 Eucalyptus grandis HOM05D006962 ORTHO05D008696 1.0e-18 97.8 132 44.7
MD16G1121100 Malus domestica HOM05D006962 ORTHO05D008696 1.3e-18 97.4 116 44.8
CSS0033119 Camellia sinensis var. sinensis HOM05D006962 ORTHO05D008696 2.3e-18 96.7 124 43.5
CANSAT01G0828 Cannabis sativa HOM05D006962 ORTHO05D008696 2.3e-18 96.7 123 46.3
ClCG06G002190 Citrullus lanatus HOM05D006962 ORTHO05D008696 5.1e-18 95.5 129 42.6
Gohir.A04G140400 Gossypium hirsutum HOM05D006962 ORTHO05D008696 5.1e-18 95.5 204 32.8
MELO3C022311.2 Cucumis melo HOM05D006962 ORTHO05D008696 6.7e-18 95.1 101 46.5
Gohir.D04G183600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.1e-17 94.4 203 32.5
Lsat_1_v5_gn_4_641 Lactuca sativa HOM05D006962 ORTHO05D008696 1.1e-17 94.4 100 48.0
Phvul.001G262900 Phaseolus vulgaris HOM05D006962 ORTHO05D008696 1.5e-17 94.0 87 57.5
Lj6g0020338 Lotus japonicus HOM05D006962 ORTHO05D008696 3.3e-17 92.8 128 41.4
PGR102G1052 Punica granatum HOM05D006962 ORTHO05D008696 3.3e-17 92.8 77 59.7
TPR.G17769 Trifolium pratense HOM05D006962 ORTHO05D008696 4.3e-17 92.4 91 53.8
Gorai.012G176600 Gossypium raimondii HOM05D006962 ORTHO05D008696 5.7e-17 92.0 203 32.0
Nitab4.5_0006369g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 5.7e-17 92.0 133 39.8
Gohir.A03G124600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.6e-16 90.5 198 33.8
Gohir.D02G147600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.6e-16 90.5 184 34.8
Medtr3g085060 Medicago truncatula HOM05D006962 ORTHO05D008696 1.6e-16 90.5 85 55.3
Solyc05g015640.3 Solanum lycopersicum HOM05D006962 ORTHO05D008696 1.6e-16 90.5 135 39.3
FvH4_4g23570 Fragaria vesca HOM05D006962 ORTHO05D008696 2.1e-16 90.1 111 44.1
Nitab4.5_0000996g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 2.1e-16 90.1 133 39.1
Sopen05g011100 Solanum pennellii HOM05D006962 ORTHO05D008696 2.1e-16 90.1 135 39.3
PGSC0003DMG400034312 Solanum tuberosum HOM05D006962 ORTHO05D008696 2.1e-16 90.1 142 39.4
AUR62028912 Chenopodium quinoa HOM05D006962 ORTHO05D008696 2.8e-16 89.7 82 52.4
Sc14g0009120 Simmondsia chinensis HOM05D006962 ORTHO05D008696 2.8e-16 89.7 133 42.1
Gorai.005G165400 Gossypium raimondii HOM05D006962 ORTHO05D008696 3.7e-16 89.4 198 34.3
PSO017G7099 Papaver somniferum HOM05D006962 ORTHO05D008696 3.7e-16 89.4 65 67.7
PSO478G2808 Papaver somniferum HOM05D006962 ORTHO05D008696 3.7e-16 89.4 65 67.7
Lalb_Chr23g0278151 Lupinus albus HOM05D006962 ORTHO05D008696 6.2e-16 88.6 103 42.7
Nn3g16434 Nelumbo nucifera HOM05D006962 ORTHO05D008696 6.2e-16 88.6 123 43.1
RcHm_v2.0_Chr4g0429971 Rosa chinensis HOM05D006962 ORTHO05D008696 6.2e-16 88.6 193 33.2
Aqoxy3G01577 Aquilegia oxysepala HOM05D006962 ORTHO05D008696 8.2e-16 88.2 91 50.5
Sabra03G0124800 Salix brachista HOM05D006962 ORTHO05D008696 8.2e-16 88.2 89 51.7
CsaV3_6G008260 Cucumis sativus L. HOM05D006962 ORTHO05D008696 1.1e-15 87.8 89 51.7
Potri.003G170700 Populus trichocarpa HOM05D006962 ORTHO05D008696 1.4e-15 87.4 94 50.0
TAR629G1477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 1.8e-15 87.0 90 52.2
Ah.03g136040 Amaranthus hybridus HOM05D006962 ORTHO05D008696 3.1e-15 86.3 94 47.9
Gohir.D03G043133 Gossypium hirsutum HOM05D006962 ORTHO05D008696 3.1e-15 86.3 82 54.9
CAN.G1124.2 Capsicum annuum HOM05D006962 ORTHO05D008696 4.0e-15 85.9 94 47.9
Psat5g097440 Pisum sativum HOM05D006962 ORTHO05D008696 5.3e-15 85.5 148 37.2
AUR62005637 Chenopodium quinoa HOM05D006962 ORTHO05D008696 6.9e-15 85.1 82 52.4
Glyma.11G251800 Glycine max HOM05D006962 ORTHO05D008696 6.9e-15 85.1 88 54.5
Hma1.2p1_0657F.1_g197165 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 6.9e-15 85.1 62 66.1
Hma1.2p1_0967F.1_g242360 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 6.9e-15 85.1 62 66.1
Actinidia08062 Actinidia chinensis HOM05D006962 ORTHO05D008696 9.0e-15 84.7 60 66.7
COL.COLO4_20424 Corchorus olitorius HOM05D006962 ORTHO05D008696 1.5e-14 84.0 205 32.7
Cpa.g.sc43.75 Carica papaya HOM05D006962 ORTHO05D008696 2.6e-14 83.2 132 38.6
THA.LOC104807506 Tarenaya hassleriana HOM05D006962 ORTHO05D008696 2.6e-14 83.2 83 53.0
TAR636G2109 Trochodendron aralioides HOM05D006962 ORTHO05D008696 2.6e-14 83.2 88 51.1
Migut.E00010 Erythranthe guttata HOM05D006962 ORTHO05D008696 3.4e-14 82.8 95 45.3
Hund25473 Selenicereus undatus HOM05D006962 ORTHO05D008696 4.5e-14 82.4 78 47.4
MSTRG.13306 Avicennia marina HOM05D006962 ORTHO05D008696 7.6e-14 81.6 95 45.3
MELO3C032628.2 Cucumis melo HOM05D006962 ORTHO05D008696 1.0e-13 81.3 121 39.7
ClCG07G015460 Citrullus lanatus HOM05D006962 ORTHO05D008696 1.3e-13 80.9 79 51.9
CsaV3_4G003050 Cucumis sativus L. HOM05D006962 ORTHO05D008696 1.3e-13 80.9 143 38.5
TAR629G0477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 1.3e-13 80.9 90 51.1
Gorai.003G044100 Gossypium raimondii HOM05D006962 ORTHO05D008696 2.9e-13 79.7 86 51.2
AL1G40700 Arabidopsis lyrata HOM05D006962 ORTHO05D008696 6.5e-13 78.6 86 46.5
DCAR_007000 Daucus carota HOM05D006962 ORTHO05D008696 1.1e-12 77.8 156 35.3
CARHR026870 Cardamine hirsuta HOM05D006962 ORTHO05D008696 1.9e-12 77.0 66 56.1
MBI07_g11269_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 1.9e-12 77.0 190 30.0
Thhalv10008828m.g Eutrema salsugineum HOM05D006962 ORTHO05D008696 2.5e-12 76.6 66 51.5
Aa31LG7G9900 Aethionema arabicum HOM05D006962 ORTHO05D008696 4.2e-12 75.9 64 51.6
BcaC05g26736 Brassica carinata HOM05D006962 ORTHO05D008696 4.2e-12 75.9 151 29.8
MBI07_g28246_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 7.1e-12 75.1 191 29.3
Sp1g23540 Schrenkiella parvula HOM05D006962 ORTHO05D008696 7.1e-12 75.1 66 50.0
Carub.0001s2583 Capsella rubella HOM05D006962 ORTHO05D008696 1.2e-11 74.3 60 55.0
A09p38640 Brassica napus HOM05D006962 ORTHO05D008696 1.6e-11 73.9 151 29.8
BraA09t39370Z Brassica rapa HOM05D006962 ORTHO05D008696 1.6e-11 73.9 151 29.8
C07p17910 Brassica napus HOM05D006962 ORTHO05D008696 4.6e-11 72.4 152 30.3
HPP92_023534 Vanilla planifolia HOM05D006962 ORTHO05D008696 4.6e-11 72.4 69 50.7
BcaB03g14005 Brassica carinata HOM05D006962 ORTHO05D008696 6.1e-11 72.0 66 48.5
BolC7t42297H Brassica oleracea HOM05D006962 ORTHO05D008696 6.1e-11 72.0 152 30.3
A07p11980 Brassica napus HOM05D006962 ORTHO05D008696 3.9e-10 69.3 57 50.9
ATR0561G196 Amborella trichopoda HOM05D006962 ORTHO05D008696 5.1e-10 68.9 131 34.4
C05p26000 Brassica napus HOM05D006962 ORTHO05D008696 6.7e-10 68.6 151 29.1
BolC5t31319H Brassica oleracea HOM05D006962 ORTHO05D008696 6.7e-10 68.6 158 29.7
CDE05G3434 Ceratophyllum demersum HOM05D006962 ORTHO05D008696 8.7e-10 68.2 92 38.0
SGA_v2.0_scaffold87G27164 Striga asiatica HOM05D006962 ORTHO05D008696 8.7e-10 68.2 73 52.1
Os02g0509600 Oryza sativa ssp. japonica HOM05D006962 ORTHO05D008696 1.1e-09 67.8 66 43.9
BcaC05g26545 Brassica carinata HOM05D006962 ORTHO05D008696 1.5e-09 67.4 158 29.1
BraA07t28983Z Brassica rapa HOM05D006962 ORTHO05D008696 1.5e-09 67.4 55 50.9
AT1G27300 Arabidopsis thaliana HOM05D006962 ORTHO05D008696 2.5e-09 66.6 53 56.6
Zm00001eb180910 Zea mays HOM05D006962 ORTHO05D008696 3.3e-09 66.2 96 38.5
BcaNung06812 Brassica carinata HOM05D006962 ORTHO05D008696 7.4e-09 65.1 152 27.6
Zm00001eb241800 Zea mays HOM05D006962 ORTHO05D008696 2.8e-08 63.2 82 40.2


User provided reference genes

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