Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.2328 Acer truncatum HOM05D002231 ORTHO05D006103 8.2e-120 433.7 216 100.0
Ciclev10032446m.g Citrus clementina HOM05D002231 ORTHO05D006103 3.8e-77 292.0 197 79.2
Thecc.02G207900 Theobroma cacao HOM05D002231 ORTHO05D006103 2.7e-70 269.2 201 73.1
Manes.12G011000 Manihot esculenta HOM05D002231 ORTHO05D006103 1.0e-69 267.3 202 74.3
CSS0047868 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 3.9e-69 265.4 197 73.6
CSS0048016 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 3.9e-69 265.4 197 73.6
Dinv10954 Davidia involucrata HOM05D002231 ORTHO05D006103 4.3e-68 261.9 199 72.9
Prupe.1G225400 Prunus persica HOM05D002231 ORTHO05D006103 7.3e-68 261.2 196 73.5
CiPaw.05G109300 Carya illinoinensis HOM05D002231 ORTHO05D006103 9.5e-68 260.8 197 73.1
Dinv17566 Davidia involucrata HOM05D002231 ORTHO05D005593 3.6e-67 258.8 197 72.1
CiPaw.06G102900 Carya illinoinensis HOM05D002231 ORTHO05D006103 8.0e-67 257.7 196 74.0
Gorai.002G183300 Gossypium raimondii HOM05D002231 ORTHO05D006103 1.4e-66 256.9 199 71.4
Gohir.A01G160300 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.8e-66 256.5 199 71.9
RcHm_v2.0_Chr4g0430201 Rosa chinensis HOM05D002231 ORTHO05D006103 1.8e-66 256.5 196 71.4
GSVIVG01010488001 Vitis vinifera HOM05D002231 ORTHO05D006103 2.3e-66 256.1 196 71.9
Actinidia30646 Actinidia chinensis HOM05D002231 ORTHO05D006103 4.0e-66 255.4 198 71.7
Cfa009373 Carpinus fangiana HOM05D002231 ORTHO05D006103 5.2e-66 255.0 197 72.1
MD16G1119800 Malus domestica HOM05D002231 ORTHO05D006103 1.2e-65 253.8 197 71.6
Gohir.D01G147100 Gossypium hirsutum HOM05D002231 ORTHO05D006103 2.0e-65 253.1 199 70.9
MD13G1119600 Malus domestica HOM05D002231 ORTHO05D006103 2.2e-64 249.6 197 70.6
CANSAT01G1083 Cannabis sativa HOM05D002231 ORTHO05D006103 4.9e-64 248.4 198 70.2
Hma1.2p1_0275F.1_g110740 Hydrangea macrophylla HOM05D002231 ORTHO05D006103 8.3e-64 247.7 207 65.2
Rhsim12G0025500 Rhododendron simsii HOM05D002231 ORTHO05D006103 1.1e-63 247.3 199 69.3
Nn3g16455 Nelumbo nucifera HOM05D002231 ORTHO05D006103 2.0e-62 243.0 200 71.5
QL03p052604 Quercus lobata HOM05D002231 ORTHO05D006103 3.5e-62 242.3 247 58.7
FvH4_4g23720 Fragaria vesca HOM05D002231 ORTHO05D006103 7.8e-62 241.1 204 67.2
Gorai.012G176000 Gossypium raimondii HOM05D002231 ORTHO05D006103 7.8e-62 241.1 202 64.9
Nitab4.5_0002558g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.0e-61 240.7 196 66.8
Gohir.D04G183000 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.3e-61 240.4 204 64.2
FAN12G0590 Fragaria x ananassa HOM05D002231 ORTHO05D006103 1.7e-61 240.0 204 67.2
Gohir.A04G139800 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.7e-61 240.0 203 65.0
Lj3C1069T6 Lonicera japonica HOM05D002231 ORTHO05D006103 2.3e-61 239.6 202 66.3
Duzib251G0325 Durio zibethinus HOM05D002231 ORTHO05D006103 3.0e-61 239.2 206 64.6
TWI18G1086 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 3.0e-61 239.2 197 68.5
FAN07G0699 Fragaria x ananassa HOM05D002231 ORTHO05D006103 3.9e-61 238.8 204 66.7
FAN17G0493 Fragaria x ananassa HOM05D002231 ORTHO05D005593 3.9e-61 238.8 196 67.9
TWI36G0137 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 3.9e-61 238.8 198 68.2
FAN22G0585 Fragaria x ananassa HOM05D002231 ORTHO05D006103 5.0e-61 238.4 196 67.9
Sopen04g017470 Solanum pennellii HOM05D002231 ORTHO05D006103 2.5e-60 236.1 198 68.2
Eucgr.B03496 Eucalyptus grandis HOM05D002231 ORTHO05D006103 3.3e-60 235.7 209 65.1
Manes.13G011701 Manihot esculenta HOM05D002231 ORTHO05D006103 4.3e-60 235.3 192 67.7
Potri.001G056500 Populus trichocarpa HOM05D002231 ORTHO05D006103 7.3e-60 234.6 203 66.5
Sc11g0000450 Simmondsia chinensis HOM05D002231 ORTHO05D006103 9.5e-60 234.2 209 63.2
Solyc04g045580.4 Solanum lycopersicum HOM05D002231 ORTHO05D006103 1.2e-59 233.8 198 67.7
Nitab4.5_0000067g0140 Nicotiana tabacum HOM05D002231 ORTHO05D006103 2.1e-59 233.0 221 59.7
THA.LOC104807538 Tarenaya hassleriana HOM05D002231 ORTHO05D006103 2.8e-59 232.6 200 64.0
arahy.Tifrunner.gnm1.ann1.4LX5KX Arachis hypogaea HOM05D002231 ORTHO05D006103 4.7e-59 231.9 196 66.8
arahy.Tifrunner.gnm1.ann1.A5UQ16 Arachis hypogaea HOM05D002231 ORTHO05D006103 4.7e-59 231.9 196 66.8
MSTRG.501 Avicennia marina HOM05D002231 ORTHO05D006103 8.1e-59 231.1 202 63.9
Aqoxy5G03366 Aquilegia oxysepala HOM05D002231 ORTHO05D006103 3.1e-58 229.2 203 64.0
Migut.J00960 Erythranthe guttata HOM05D002231 ORTHO05D006103 4.0e-58 228.8 205 62.0
Cc11_g16940 Coffea canephora HOM05D002231 ORTHO05D006103 5.2e-58 228.4 197 66.0
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 5.2e-58 228.4 190 66.8
EL10Ac6g13507 Beta vulgaris HOM05D002231 ORTHO05D006103 6.8e-58 228.0 196 66.8
TPR.G17792 Trifolium pratense HOM05D002231 ORTHO05D006103 6.8e-58 228.0 198 64.6
Sabra03G0125900 Salix brachista HOM05D002231 ORTHO05D005593 1.2e-57 227.3 224 60.7
CsaV3_5G030240 Cucumis sativus L. HOM05D002231 ORTHO05D006103 1.5e-57 226.9 191 66.5
Potri.003G172000 Populus trichocarpa HOM05D002231 ORTHO05D006103 1.5e-57 226.9 209 64.6
TAR629G1028 Trochodendron aralioides HOM05D002231 ORTHO05D006103 2.6e-57 226.1 194 63.9
Lsat_1_v5_gn_4_3541 Lactuca sativa HOM05D002231 ORTHO05D006103 4.4e-57 225.3 199 62.8
Psat5g096440 Pisum sativum HOM05D002231 ORTHO05D006103 4.4e-57 225.3 198 63.1
PGR102G0892 Punica granatum HOM05D002231 ORTHO05D006103 5.8e-57 224.9 204 63.2
Ca_16456_v3 Cicer arietinum L. HOM05D002231 ORTHO05D006103 1.3e-56 223.8 198 62.1
ClCG11G013620 Citrullus lanatus HOM05D002231 ORTHO05D006103 2.2e-56 223.0 193 63.7
Glyma.11G250900 Glycine max HOM05D002231 ORTHO05D006103 2.2e-56 223.0 199 63.8
MSTRG.8006 Avicennia marina HOM05D002231 ORTHO05D006103 2.9e-56 222.6 199 62.3
Sp1g23610 Schrenkiella parvula HOM05D002231 ORTHO05D006103 2.9e-56 222.6 202 61.9
Lalb_Chr23g0278101 Lupinus albus HOM05D002231 ORTHO05D006103 3.7e-56 222.2 146 78.1
AUR62028925 Chenopodium quinoa HOM05D002231 ORTHO05D006103 4.9e-56 221.9 197 66.0
Glyma.18G006100 Glycine max HOM05D002231 ORTHO05D006103 8.3e-56 221.1 199 63.3
Medtr3g085280 Medicago truncatula HOM05D002231 ORTHO05D006103 8.3e-56 221.1 199 62.8
Nn4g22308 Nelumbo nucifera HOM05D002231 ORTHO05D006103 1.1e-55 220.7 181 66.3
A07p11870 Brassica napus HOM05D002231 ORTHO05D006103 1.4e-55 220.3 202 60.9
Carub.0001s2592 Capsella rubella HOM05D002231 ORTHO05D006103 1.4e-55 220.3 202 59.9
Sed0020663 Sechium edule HOM05D002231 ORTHO05D006103 1.4e-55 220.3 200 63.5
SGA_v2.0_scaffold9G04675 Striga asiatica HOM05D002231 ORTHO05D006103 1.9e-55 219.9 202 61.9
Sabra01G0040900 Salix brachista HOM05D002231 ORTHO05D006103 2.4e-55 219.5 215 62.3
AT1G27385 Arabidopsis thaliana HOM05D002231 ORTHO05D006103 4.1e-55 218.8 202 60.4
Aa31LG7G9850 Aethionema arabicum HOM05D002231 ORTHO05D006103 5.4e-55 218.4 199 62.8
AL1G40790 Arabidopsis lyrata HOM05D002231 ORTHO05D006103 5.4e-55 218.4 200 61.5
Lj6g0006303 Lotus japonicus HOM05D002231 ORTHO05D006103 7.1e-55 218.0 141 79.4
VMungo1383G1118 Vigna mungo HOM05D002231 ORTHO05D006103 1.2e-54 217.2 198 63.1
Phvul.001G262200 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 1.6e-54 216.9 170 69.4
BcaC06g35283 Brassica carinata HOM05D002231 ORTHO05D006103 3.5e-54 215.7 202 60.4
C07p17810 Brassica napus HOM05D002231 ORTHO05D006103 3.5e-54 215.7 202 60.4
BolC5t31328H Brassica oleracea HOM05D002231 ORTHO05D006103 3.5e-54 215.7 202 59.9
BolC7t42287H Brassica oleracea HOM05D002231 ORTHO05D006103 3.5e-54 215.7 202 60.4
BraA09t39361Z Brassica rapa HOM05D002231 ORTHO05D006103 3.5e-54 215.7 202 60.9
CDE02G1146 Ceratophyllum demersum HOM05D002231 ORTHO05D006103 4.6e-54 215.3 196 62.8
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 6.0e-54 214.9 201 59.7
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 6.0e-54 214.9 201 60.2
A09p38550 Brassica napus HOM05D002231 ORTHO05D006103 6.0e-54 214.9 202 60.4
BraA07t28971Z Brassica rapa HOM05D002231 ORTHO05D006103 6.0e-54 214.9 202 59.9
MELO3C011862.2 Cucumis melo HOM05D002231 ORTHO05D006103 7.8e-54 214.5 197 63.5
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 1.3e-53 213.8 201 60.2
PSO017G2330 Papaver somniferum HOM05D002231 ORTHO05D006103 3.0e-53 212.6 199 61.8
CARHR026970 Cardamine hirsuta HOM05D002231 ORTHO05D006103 3.9e-53 212.2 202 58.9
Duzib248G1458 Durio zibethinus HOM05D002231 ORTHO05D006103 5.1e-53 211.8 171 67.8
vmacro01059 Vaccinium macrocarpon HOM05D002231 ORTHO05D006103 6.6e-53 211.5 268 51.5
Thhalv10008813m.g Eutrema salsugineum HOM05D002231 ORTHO05D006103 1.1e-52 210.7 202 59.9
HanXRQChr12g0385441 Helianthus annuus HOM05D002231 ORTHO05D006103 3.3e-52 209.1 203 58.1
COL.COLO4_20407 Corchorus olitorius HOM05D002231 ORTHO05D006103 4.3e-52 208.8 171 66.7
C05p26090 Brassica napus HOM05D002231 ORTHO05D006103 5.6e-52 208.4 203 58.6
Hund25467 Selenicereus undatus HOM05D002231 ORTHO05D006103 5.6e-52 208.4 196 59.2
Lalb_Chr08g0230621 Lupinus albus HOM05D002231 ORTHO05D006103 4.7e-51 205.3 154 71.4
unitig_747.g21125 Utricularia gibba HOM05D002231 ORTHO05D006103 6.2e-51 204.9 189 60.3
Peaxi162Scf00518g00424 Petunia axillaris HOM05D002231 ORTHO05D006103 3.1e-50 202.6 137 79.6
Haze_12423 Corylus avellana HOM05D002231 ORTHO05D006103 8.9e-50 201.1 168 69.0
Oeu049136.1 Olea europaea HOM05D002231 ORTHO05D006103 1.2e-49 200.7 190 61.6
MBI11_g05330_MAGBIO Magnolia biondii HOM05D002231 ORTHO05D006103 2.0e-49 199.9 194 62.9
SalBow1G3407 Salvia bowleyana HOM05D002231 ORTHO05D006103 3.4e-49 199.1 272 47.4
Ah.02g130890 Amaranthus hybridus HOM05D002231 ORTHO05D006103 8.4e-48 194.5 196 60.2
Phvul.L002246 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 8.4e-48 194.5 197 59.9
Lsat_1_v5_gn_3_31041 Lactuca sativa HOM05D002231 ORTHO05D006103 2.4e-47 193.0 199 54.8
ECA234G2919 Erigeron canadensis HOM05D002231 ORTHO05D006103 4.1e-47 192.2 112 85.7
Glyma.08G104500 Glycine max HOM05D002231 ORTHO05D006103 5.4e-47 191.8 141 71.6
Oeu029193.1 Olea europaea HOM05D002231 ORTHO05D006103 1.6e-46 190.3 169 63.9
SalBow2G1775 Salvia bowleyana HOM05D002231 ORTHO05D006103 3.9e-45 185.7 169 62.7
Zm00001eb085510 Zea mays HOM05D002231 ORTHO05D006103 1.1e-44 184.1 113 78.8
Cpa.g.sc808.1 Carica papaya HOM05D002231 ORTHO05D006103 9.6e-44 181.0 102 87.3
AUR62005623 Chenopodium quinoa HOM05D002231 ORTHO05D006103 9.6e-44 181.0 168 64.3
Os04g0386500 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 1.6e-43 180.3 113 77.0
Nitab4.5_0000155g0190 Nicotiana tabacum HOM05D002231 ORTHO05D006103 1.4e-42 177.2 175 61.1
Zm00001eb421060 Zea mays HOM05D002231 ORTHO05D006103 1.4e-42 177.2 137 68.6
HanXRQChr06g0174651 Helianthus annuus HOM05D002231 ORTHO05D006103 5.2e-42 175.3 200 49.5
DCAR_026462 Daucus carota HOM05D002231 ORTHO05D006103 8.9e-42 174.5 193 52.8
Nitab4.5_0004003g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 8.9e-42 174.5 168 60.7
SalBow8G1223 Salvia bowleyana HOM05D002231 ORTHO05D006103 8.9e-42 174.5 131 68.7
Lj4g0021495 Lotus japonicus HOM05D002231 ORTHO05D006103 4.4e-41 172.2 160 62.5
Os02g0507400 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 7.6e-41 171.4 116 70.7
DCAR_007004 Daucus carota HOM05D002231 ORTHO05D006103 3.8e-40 169.1 146 63.0
ECA246G2515 Erigeron canadensis HOM05D002231 ORTHO05D006103 6.4e-40 168.3 145 57.2
ATR0059G025 Amborella trichopoda HOM05D002231 ORTHO05D006103 3.9e-37 159.1 144 61.8
ECA233G1565 Erigeron canadensis HOM05D002231 ORTHO05D006103 1.1e-34 151.0 135 60.0
AagrBONN_evm.TU.Sc2ySwM_368.423 Anthoceros agrestis HOM05D002231 ORTHO05D006103 4.5e-33 145.6 129 57.4
SMO364G0411 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 2.9e-32 142.9 113 64.6
Pp3c15_19360 Physcomitrium patens HOM05D002231 ORTHO05D006103 8.4e-32 141.4 144 55.6
HanXRQChr08g0207851 Helianthus annuus HOM05D002231 ORTHO05D006103 1.4e-31 140.6 131 56.5
SMO246G0027 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 1.4e-31 140.6 116 61.2
Pp3c9_19480 Physcomitrium patens HOM05D002231 ORTHO05D006103 2.3e-29 133.3 119 59.7
arahy.Tifrunner.gnm1.ann1.1IJF7J Arachis hypogaea HOM05D002231 ORTHO05D006103 3.9e-29 132.5 131 58.0
CBR_g57027 Chara braunii HOM05D002231 ORTHO05D006103 8.7e-29 131.3 119 53.8
arahy.Tifrunner.gnm1.ann1.RN2E3G Arachis hypogaea HOM05D002231 ORTHO05D006103 5.6e-28 128.6 131 58.0
Lsat_1_v5_gn_4_56001 Lactuca sativa HOM05D002231 ORTHO05D006103 3.0e-21 106.3 112 50.0
PRCOL_00004939 Prasinoderma coloniale HOM05D002231 ORTHO05D006103 1.2e-17 94.4 114 42.1
TAR383G1026 Trochodendron aralioides HOM05D002231 ORTHO05D006103 2.5e-15 86.7 89 59.6
Cre02.g074700 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 3.0e-13 79.7 141 37.6
Cpa.g.sc43.61 Carica papaya HOM05D002231 ORTHO05D006103 1.1e-12 77.8 103 51.5
MCO02G005 Micromonas commoda HOM05D003605 ORTHO05D004292 3.3e-12 76.3 87 40.2
RcHm_v2.0_Chr3g0491761 Rosa chinensis HOM05D002231 ORTHO05D006103 7.4e-12 75.1 44 86.4
Cre12.g508300 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 2.1e-11 73.6 74 52.7
CDE05G2241 Ceratophyllum demersum HOM05D001859 ORTHO05D001836 2.4e-10 70.1 51 66.7
C02p58440 Brassica napus HOM05D001393 ORTHO05D032808 3.8e-08 62.8 39 74.4
TAR636G2964 Trochodendron aralioides HOM05D002231 ORTHO05D006103 5.0e-08 62.4 35 91.4


User provided reference genes

Program Settings