Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.2323 Acer truncatum HOM05D005988 ORTHO05D007392 4.0e-50 201.1 97 100.0
Thecc.02G210500 Theobroma cacao HOM05D005988 ORTHO05D007392 6.9e-42 173.7 91 87.9
Hma1.2p1_0065F.1_g035500 Hydrangea macrophylla HOM05D005988 ORTHO05D007392 2.0e-41 172.2 95 86.3
COL.COLO4_20400 Corchorus olitorius HOM05D005988 ORTHO05D007392 7.6e-41 170.2 92 83.7
Cpa.g.sc43.58 Carica papaya HOM05D005988 ORTHO05D007392 1.3e-40 169.5 91 84.6
Cfa009369 Carpinus fangiana HOM05D005988 ORTHO05D007392 1.3e-40 169.5 89 88.8
Haze_12418 Corylus avellana HOM05D005988 ORTHO05D007392 1.3e-40 169.5 89 88.8
Gohir.D02G149200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 2.2e-40 168.7 91 84.6
Gorai.005G167100 Gossypium raimondii HOM05D005988 ORTHO05D007392 2.2e-40 168.7 91 84.6
CiPaw.05G109900 Carya illinoinensis HOM05D005988 ORTHO05D007392 2.9e-40 168.3 89 86.5
Potri.001G055400 Populus trichocarpa HOM05D005988 ORTHO05D007392 2.9e-40 168.3 87 88.5
Gohir.A03G126200 Gossypium hirsutum HOM05D005988 ORTHO05D007392 6.4e-40 167.2 91 83.5
Manes.13G012300 Manihot esculenta HOM05D005988 ORTHO05D007392 8.4e-40 166.8 87 87.4
Sabra01G0040000 Salix brachista HOM05D005988 ORTHO05D007392 8.4e-40 166.8 87 87.4
Sabra03G0126500 Salix brachista HOM05D005988 ORTHO05D007392 8.4e-40 166.8 87 87.4
Potri.003G173000 Populus trichocarpa HOM05D005988 ORTHO05D007392 1.1e-39 166.4 87 86.2
Duzib251G0424 Durio zibethinus HOM05D005988 ORTHO05D007392 1.4e-39 166.0 91 85.7
Duzib251G0426 Durio zibethinus HOM05D005988 ORTHO05D007392 1.9e-39 165.6 91 84.6
CANSAT01G3258 Cannabis sativa HOM05D005988 ORTHO05D007392 2.4e-39 165.2 93 83.9
Manes.12G011400 Manihot esculenta HOM05D005988 ORTHO05D007392 7.1e-39 163.7 87 85.1
PGR102G1123 Punica granatum HOM05D005988 ORTHO05D007392 9.3e-39 163.3 88 83.0
vmacro01331 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 1.2e-38 162.9 97 79.4
Cc11_g16890 Coffea canephora HOM05D005988 ORTHO05D007392 2.1e-38 162.2 96 79.2
Eucgr.B03491 Eucalyptus grandis HOM05D005988 ORTHO05D007392 2.7e-38 161.8 88 84.1
ClCG11G013680 Citrullus lanatus HOM05D005988 ORTHO05D007392 4.6e-38 161.0 90 80.0
Hund13388 Selenicereus undatus HOM05D005988 ORTHO05D007392 7.8e-38 160.2 86 84.9
Rhsim12G0099600 Rhododendron simsii HOM05D005988 ORTHO05D007392 1.0e-37 159.8 97 78.4
Prupe.1G225900 Prunus persica HOM05D005988 ORTHO05D007392 1.7e-37 159.1 94 77.7
RcHm_v2.0_Chr4g0430261 Rosa chinensis HOM05D005988 ORTHO05D007392 1.7e-37 159.1 89 82.0
CSS0025775 Camellia sinensis var. sinensis HOM05D005988 ORTHO05D007392 2.3e-37 158.7 95 74.7
Rhsim04G0162300 Rhododendron simsii HOM05D005988 ORTHO05D007392 2.3e-37 158.7 95 77.9
Nn4g22324 Nelumbo nucifera HOM05D005988 ORTHO05D007392 3.9e-37 157.9 91 76.9
vmacro05591 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 3.9e-37 157.9 92 79.3
vmacro23425 Vaccinium macrocarpon HOM05D005988 ORTHO05D007392 3.9e-37 157.9 92 79.3
PSO017G5437 Papaver somniferum HOM05D005988 ORTHO05D007392 6.6e-37 157.1 85 83.5
Glyma.05G147302 Glycine max HOM05D005988 ORTHO05D007392 8.7e-37 156.8 84 84.5
Nitab4.5_0006506g0010 Nicotiana tabacum HOM05D005988 ORTHO05D007392 8.7e-37 156.8 90 78.9
TPR.G34164 Trifolium pratense HOM05D005988 ORTHO05D007392 1.1e-36 156.4 84 83.3
Glyma.08G104300 Glycine max HOM05D005988 ORTHO05D007392 1.5e-36 156.0 84 83.3
Phvul.L002046 Phaseolus vulgaris HOM05D005988 ORTHO05D007392 1.5e-36 156.0 84 84.5
Nitab4.5_0005361g0020 Nicotiana tabacum HOM05D005988 ORTHO05D007392 1.9e-36 155.6 90 77.8
Aa31sc377G10 Aethionema arabicum HOM05D005988 ORTHO05D007392 2.5e-36 155.2 97 74.2
CARHR059890 Cardamine hirsuta HOM05D005988 ORTHO05D007392 2.5e-36 155.2 95 74.7
ECA233G0411 Erigeron canadensis HOM05D005988 ORTHO05D007392 2.5e-36 155.2 94 74.5
MBI01_g01248_MAGBIO Magnolia biondii HOM05D005988 ORTHO05D007392 2.5e-36 155.2 86 81.4
CsaV3_5G030290 Cucumis sativus L. HOM05D005988 ORTHO05D007392 3.3e-36 154.8 85 81.2
FvH4_4g23770 Fragaria vesca HOM05D005988 ORTHO05D007392 3.3e-36 154.8 89 78.7
FAN07G1208 Fragaria x ananassa HOM05D005988 ORTHO05D007392 3.3e-36 154.8 89 78.7
FAN12G0190 Fragaria x ananassa HOM05D005988 ORTHO05D007392 3.3e-36 154.8 95 74.7
FAN17G2984 Fragaria x ananassa HOM05D005988 ORTHO05D007392 3.3e-36 154.8 95 74.7
THA.LOC109117182 Tarenaya hassleriana HOM05D005988 ORTHO05D007392 3.3e-36 154.8 95 74.7
GSVIVG01010482001 Vitis vinifera HOM05D005988 ORTHO05D007392 4.3e-36 154.5 87 78.2
AT1G67350 Arabidopsis thaliana HOM05D005988 ORTHO05D007392 5.6e-36 154.1 95 73.7
Psat0s2314g0040 Pisum sativum HOM05D005988 ORTHO05D007392 5.6e-36 154.1 84 82.1
AL2G25900 Arabidopsis lyrata HOM05D005988 ORTHO05D007392 1.3e-35 152.9 97 72.2
BcaB03g15204 Brassica carinata HOM05D005988 ORTHO05D007392 1.3e-35 152.9 95 72.6
Ca_18034_v3 Cicer arietinum L. HOM05D005988 ORTHO05D007392 1.3e-35 152.9 91 78.0
DCAR_031202 Daucus carota HOM05D005988 ORTHO05D007392 1.3e-35 152.9 91 74.7
Sed0026530 Sechium edule HOM05D005988 ORTHO05D007392 1.3e-35 152.9 85 83.5
ATR0582G290 Amborella trichopoda HOM05D005988 ORTHO05D007392 2.1e-35 152.1 86 79.1
EL10Ac2g02768 Beta vulgaris HOM05D005988 ORTHO05D007392 2.1e-35 152.1 85 82.4
MELO3C011867.2 Cucumis melo HOM05D005988 ORTHO05D007392 2.1e-35 152.1 85 81.2
TPR.G17077 Trifolium pratense HOM05D005988 ORTHO05D007392 2.1e-35 152.1 84 81.0
Carub.0002s1364 Capsella rubella HOM05D005988 ORTHO05D007392 2.8e-35 151.8 95 72.6
Sc15g0005560 Simmondsia chinensis HOM05D005988 ORTHO05D007392 2.8e-35 151.8 86 81.4
Sc15g0005760 Simmondsia chinensis HOM05D005988 ORTHO05D007392 2.8e-35 151.8 86 81.4
Actinidia08072 Actinidia chinensis HOM05D005988 ORTHO05D007392 3.6e-35 151.4 86 80.2
Lalb_Chr07g0187141 Lupinus albus HOM05D005988 ORTHO05D007392 6.2e-35 150.6 85 78.8
MD16G1119100 Malus domestica HOM05D005988 ORTHO05D007392 6.2e-35 150.6 90 77.8
Aqoxy3G00796 Aquilegia oxysepala HOM05D005988 ORTHO05D007392 8.1e-35 150.2 85 78.8
C06p42910 Brassica napus HOM05D005988 ORTHO05D007392 1.1e-34 149.8 93 74.2
CDE06G1110 Ceratophyllum demersum HOM05D005988 ORTHO05D007392 1.4e-34 149.4 86 76.7
BcaB05g24271 Brassica carinata HOM05D005988 ORTHO05D007392 2.4e-34 148.7 93 73.1
BcaB05g24277 Brassica carinata HOM05D005988 ORTHO05D007392 2.4e-34 148.7 93 73.1
BcaC08g46168 Brassica carinata HOM05D005988 ORTHO05D007392 2.4e-34 148.7 93 73.1
Lj4g0004056 Lotus japonicus HOM05D005988 ORTHO05D007392 2.4e-34 148.7 84 77.4
Medtr8g080630 Medicago truncatula HOM05D005988 ORTHO05D007392 2.4e-34 148.7 83 79.5
arahy.Tifrunner.gnm1.ann1.5IUK3V Arachis hypogaea HOM05D005988 ORTHO05D007392 3.1e-34 148.3 88 77.3
CAN.G875.9 Capsicum annuum HOM05D005988 ORTHO05D007392 3.1e-34 148.3 85 78.8
AUR62034347 Chenopodium quinoa HOM05D005988 ORTHO05D007392 3.1e-34 148.3 84 78.6
Lalb_Chr13g0294321 Lupinus albus HOM05D005988 ORTHO05D007392 4.0e-34 147.9 86 75.6
PGSC0003DMG400017679 Solanum tuberosum HOM05D005988 ORTHO05D007392 4.0e-34 147.9 84 81.0
arahy.Tifrunner.gnm1.ann1.CH2TLP Arachis hypogaea HOM05D005988 ORTHO05D007392 5.3e-34 147.5 85 78.8
arahy.Tifrunner.gnm1.ann1.NCU5C9 Arachis hypogaea HOM05D005988 ORTHO05D007392 5.3e-34 147.5 85 78.8
A07p33950 Brassica napus HOM05D005988 ORTHO05D007392 5.3e-34 147.5 93 72.0
Sp5g22300 Schrenkiella parvula HOM05D005988 ORTHO05D007392 5.3e-34 147.5 91 73.6
arahy.Tifrunner.gnm1.ann1.XY4E2W Arachis hypogaea HOM05D005988 ORTHO05D007392 6.9e-34 147.1 88 76.1
Thhalv10019308m.g Eutrema salsugineum HOM05D005988 ORTHO05D007392 9.0e-34 146.7 85 77.6
FAN22G1192 Fragaria x ananassa HOM05D005988 ORTHO05D007392 9.0e-34 146.7 85 77.6
BcaC03g14837 Brassica carinata HOM05D005988 ORTHO05D007392 1.2e-33 146.4 85 77.6
A02p14180 Brassica napus HOM05D005988 ORTHO05D007392 1.2e-33 146.4 85 77.6
C02p22980 Brassica napus HOM05D005988 ORTHO05D007392 1.2e-33 146.4 85 77.6
BraA02t06481Z Brassica rapa HOM05D005988 ORTHO05D007392 1.2e-33 146.4 85 77.6
Peaxi162Scf00038g00014 Petunia axillaris HOM05D005988 ORTHO05D007392 1.2e-33 146.4 94 75.5
Solyc04g045620.3 Solanum lycopersicum HOM05D005988 ORTHO05D007392 1.2e-33 146.4 83 81.9
Sopen04g017580 Solanum pennellii HOM05D005988 ORTHO05D007392 1.2e-33 146.4 83 81.9
AUR62022358 Chenopodium quinoa HOM05D005988 ORTHO05D007392 1.5e-33 146.0 86 76.7
HanXRQChr12g0372221 Helianthus annuus HOM05D005988 ORTHO05D007392 2.0e-33 145.6 90 72.2
Ah.10g030080 Amaranthus hybridus HOM05D005988 ORTHO05D007392 3.4e-33 144.8 81 81.5
QL03p052764 Quercus lobata HOM05D005988 ORTHO05D007392 5.8e-33 144.1 86 75.6
SalBow8G0976 Salvia bowleyana HOM05D005988 ORTHO05D007392 7.6e-33 143.7 85 78.8
Nitab4.5_0000060g0090 Nicotiana tabacum HOM05D005988 ORTHO05D007392 9.9e-33 143.3 81 80.2
HPP92_012485 Vanilla planifolia HOM05D005988 ORTHO05D007392 6.4e-32 140.6 93 73.1
Migut.E00018 Erythranthe guttata HOM05D005988 ORTHO05D007392 1.1e-31 139.8 93 72.0
unitig_62.g23652 Utricularia gibba HOM05D005988 ORTHO05D007392 7.1e-31 137.1 93 69.9
MD13G1118900 Malus domestica HOM05D005988 ORTHO05D007392 3.5e-30 134.8 78 78.2
DCAR_024095 Daucus carota HOM05D005988 ORTHO05D007392 8.7e-29 130.2 81 69.1
Lalb_Chr23g0278041 Lupinus albus HOM05D005988 ORTHO05D007392 1.1e-28 129.8 91 70.3
Os03g0685900 Oryza sativa ssp. japonica HOM05D005988 ORTHO05D007392 1.5e-28 129.4 94 62.8
TWI75G1041 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 1.9e-28 129.0 91 67.0
SGA_v2.0_scaffold144G35838 Striga asiatica HOM05D005988 ORTHO05D007392 2.5e-28 128.6 93 69.9
Zm00001eb422590 Zea mays HOM05D005988 ORTHO05D007392 2.5e-28 128.6 83 71.1
Zm00001eb290200 Zea mays HOM05D005988 ORTHO05D007392 3.3e-28 128.3 83 71.1
Lalb_Chr23g0278031 Lupinus albus HOM05D005988 ORTHO05D007392 3.7e-27 124.8 84 67.9
TWI18G1296 Tripterygium wilfordii HOM05D005988 ORTHO05D007392 3.1e-26 121.7 91 61.5
Lsat_1_v5_gn_7_95720 Lactuca sativa HOM05D005988 ORTHO05D007392 9.0e-26 120.2 72 70.8
Migut.G00897 Erythranthe guttata HOM05D005988 ORTHO05D007392 4.2e-23 111.3 70 72.9
Migut.O00848 Erythranthe guttata HOM05D005988 ORTHO05D007392 4.2e-23 111.3 70 72.9
Nitab4.5_0001404g0080 Nicotiana tabacum HOM05D005988 ORTHO05D007392 2.8e-19 98.6 58 70.7
CBR_g8533 Chara braunii HOM05D005988 ORTHO05D007392 4.8e-19 97.8 84 50.0
Pp3c3_5450 Physcomitrium patens HOM05D005988 ORTHO05D007392 9.0e-18 93.6 82 48.8
Mapoly0011s0010 Marchantia polymorpha HOM05D005988 ORTHO05D007392 4.9e-16 87.8 78 50.0
AagrBONN_evm.TU.Sc2ySwM_117.535 Anthoceros agrestis HOM05D005988 ORTHO05D007392 2.3e-13 79.0 78 46.2
SMO356G0160 Selaginella moellendorffii HOM05D005988 ORTHO05D007392 1.9e-12 75.9 80 41.2
TAR629G1917 Trochodendron aralioides HOM05D000133 ORTHO05D002928 9.0e-10 67.0 42 64.3
Actinidia30649 Actinidia chinensis HOM05D005988 ORTHO05D007392 1.5e-09 66.2 41 80.5
BcaB05g24274 Brassica carinata HOM05D005988 ORTHO05D007392 1.0e-08 63.5 86 48.8


User provided reference genes

Program Settings