Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.2314 Acer truncatum HOM05D007500 ORTHO05D009197 4.6e-71 271.2 141 100.0
Ciclev10033679m.g Citrus clementina HOM05D007500 ORTHO05D009197 2.0e-50 202.6 140 75.7
Haze_12411 Corylus avellana HOM05D007500 ORTHO05D009197 3.8e-49 198.4 139 69.8
Cfa009364 Carpinus fangiana HOM05D007500 ORTHO05D009197 1.5e-45 186.4 139 67.6
CiPaw.05G110500 Carya illinoinensis HOM05D007500 ORTHO05D009197 3.3e-45 185.3 139 65.5
CANSAT01G0539 Cannabis sativa HOM05D007500 ORTHO05D009197 4.8e-44 181.4 141 66.0
QL93p2010_0098 Quercus lobata HOM05D007500 ORTHO05D009197 1.1e-43 180.3 140 65.7
Cpa.g.sc43.48 Carica papaya HOM05D007500 ORTHO05D009197 2.4e-43 179.1 141 63.8
Duzib268G0307 Durio zibethinus HOM05D007500 ORTHO05D009197 5.3e-43 177.9 144 63.2
QL03p052860 Quercus lobata HOM05D007500 ORTHO05D009197 5.3e-43 177.9 140 65.0
QL03p053117 Quercus lobata HOM05D007500 ORTHO05D009197 5.3e-43 177.9 140 65.0
Gohir.D02G150000 Gossypium hirsutum HOM05D007500 ORTHO05D009197 1.2e-42 176.8 144 62.5
Gorai.005G168300 Gossypium raimondii HOM05D007500 ORTHO05D009197 1.2e-42 176.8 144 62.5
Gohir.A03G126600 Gossypium hirsutum HOM05D007500 ORTHO05D009197 1.0e-41 173.7 144 62.5
CSS0001813 Camellia sinensis var. sinensis HOM05D007500 ORTHO05D009197 2.9e-41 172.2 121 73.6
Manes.12G012100 Manihot esculenta HOM05D007500 ORTHO05D009197 3.2e-40 168.7 138 63.0
COL.COLO4_20391 Corchorus olitorius HOM05D007500 ORTHO05D009197 4.2e-40 168.3 144 59.7
MELO3C011458.2 Cucumis melo HOM05D007500 ORTHO05D009197 2.1e-39 166.0 141 61.0
Potri.001G055000 Populus trichocarpa HOM05D007500 ORTHO05D009197 2.1e-39 166.0 143 60.8
ClCG08G010070 Citrullus lanatus HOM05D007500 ORTHO05D009197 3.5e-39 165.2 141 61.0
Dinv14836 Davidia involucrata HOM05D007500 ORTHO05D009197 4.6e-39 164.9 133 64.7
Sed0012176 Sechium edule HOM05D007500 ORTHO05D009197 4.6e-39 164.9 141 58.9
TWI18G0612 Tripterygium wilfordii HOM05D007500 ORTHO05D009197 1.0e-38 163.7 143 60.8
Nn5g28851 Nelumbo nucifera HOM05D007500 ORTHO05D009197 1.3e-38 163.3 127 63.0
AT5G43250 Arabidopsis thaliana HOM05D007500 ORTHO05D009197 5.1e-38 161.4 125 68.0
Solyc05g015330.1 Solanum lycopersicum HOM05D007500 ORTHO05D009197 5.1e-38 161.4 131 64.1
Aqoxy6G00433 Aquilegia oxysepala HOM05D007500 ORTHO05D009197 6.7e-38 161.0 123 64.2
Sabra01G0039500 Salix brachista HOM05D007500 ORTHO05D009197 8.7e-38 160.6 132 61.4
Sopen05g010600 Solanum pennellii HOM05D007500 ORTHO05D009197 1.5e-37 159.8 131 62.6
Thhalv10003290m.g Eutrema salsugineum HOM05D007500 ORTHO05D009197 1.9e-37 159.5 129 69.8
CsaV3_6G032240 Cucumis sativus L. HOM05D007500 ORTHO05D009197 2.5e-37 159.1 128 63.3
PGSC0003DMG400029106 Solanum tuberosum HOM05D007500 ORTHO05D009197 3.3e-37 158.7 121 66.9
Sc14g0009050 Simmondsia chinensis HOM05D007500 ORTHO05D009197 4.3e-37 158.3 128 62.5
arahy.Tifrunner.gnm1.ann1.Z93F9T Arachis hypogaea HOM05D007500 ORTHO05D009197 5.7e-37 157.9 136 58.8
Sp2g08040 Schrenkiella parvula HOM05D007500 ORTHO05D009197 5.7e-37 157.9 129 69.0
PGR102G0196 Punica granatum HOM05D007500 ORTHO05D009197 7.4e-37 157.5 134 61.9
THA.LOC104814194 Tarenaya hassleriana HOM05D007500 ORTHO05D009197 9.6e-37 157.1 129 63.6
AL8G17240 Arabidopsis lyrata HOM05D007500 ORTHO05D009197 3.7e-36 155.2 128 64.8
Thecc.02G209700 Theobroma cacao HOM05D007500 ORTHO05D009197 8.2e-36 154.1 128 63.3
Aa31LG9G13320 Aethionema arabicum HOM05D007500 ORTHO05D009197 1.1e-35 153.7 129 64.3
Carub.0008s0545 Capsella rubella HOM05D007500 ORTHO05D009197 1.1e-35 153.7 131 63.4
CARHR180640 Cardamine hirsuta HOM05D007500 ORTHO05D009197 1.1e-35 153.7 128 66.4
C07p25790 Brassica napus HOM05D007500 ORTHO05D009197 2.4e-35 152.5 129 66.7
BcaC06g31713 Brassica carinata HOM05D007500 ORTHO05D009197 4.1e-35 151.8 128 64.8
BcaC06g31714 Brassica carinata HOM05D007500 ORTHO05D009197 4.1e-35 151.8 128 64.8
Nitab4.5_0001404g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 5.3e-35 151.4 116 65.5
BcaC06g34668 Brassica carinata HOM05D007500 ORTHO05D009197 9.0e-35 150.6 128 66.4
BolC7t43101H Brassica oleracea HOM05D007500 ORTHO05D009197 9.0e-35 150.6 128 66.4
Lsat_1_v5_gn_8_131281 Lactuca sativa HOM05D007500 ORTHO05D009197 1.2e-34 150.2 134 59.0
TAR381G0854 Trochodendron aralioides HOM05D007500 ORTHO05D009197 1.5e-34 149.8 141 56.7
A06p47960 Brassica napus HOM05D007500 ORTHO05D009197 5.9e-34 147.9 129 63.6
BraA06t27666Z Brassica rapa HOM05D007500 ORTHO05D009197 5.9e-34 147.9 129 63.6
VMungo1383G3421 Vigna mungo HOM05D007500 ORTHO05D009197 5.9e-34 147.9 134 58.2
Peaxi162Scf00128g00124 Petunia axillaris HOM05D007500 ORTHO05D009197 1.3e-33 146.7 116 63.8
FAN12G0274 Fragaria x ananassa HOM05D007500 ORTHO05D009197 1.7e-33 146.4 142 54.2
FvH4_4g23840 Fragaria vesca HOM05D007500 ORTHO05D009197 2.9e-33 145.6 142 53.5
FAN17G2194 Fragaria x ananassa HOM05D007500 ORTHO05D009197 3.8e-33 145.2 132 56.1
FAN22G1415 Fragaria x ananassa HOM05D007500 ORTHO05D009197 5.0e-33 144.8 132 56.1
Nitab4.5_0000861g0040 Nicotiana tabacum HOM05D007500 ORTHO05D009197 5.0e-33 144.8 114 65.8
FAN07G2442 Fragaria x ananassa HOM05D007500 ORTHO05D009197 6.5e-33 144.4 137 54.7
Glyma.18G007100 Glycine max HOM05D007500 ORTHO05D009197 6.5e-33 144.4 134 58.2
Cc11_g16840 Coffea canephora HOM05D007500 ORTHO05D009197 8.5e-33 144.1 128 60.9
EL10Ac6g13495 Beta vulgaris HOM05D007500 ORTHO05D009197 1.4e-32 143.3 136 57.4
Ca_16464_v3 Cicer arietinum L. HOM05D007500 ORTHO05D009197 1.9e-32 142.9 132 58.3
Medtr3g085430 Medicago truncatula HOM05D007500 ORTHO05D009197 4.2e-32 141.7 128 60.9
Phvul.001G261300 Phaseolus vulgaris HOM05D007500 ORTHO05D009197 4.2e-32 141.7 131 58.0
Glyma.11G250000 Glycine max HOM05D007500 ORTHO05D009197 5.5e-32 141.4 134 56.7
PSO541G0382 Papaver somniferum HOM05D007500 ORTHO05D009197 9.3e-32 140.6 120 61.7
MSTRG.7998 Avicennia marina HOM05D007500 ORTHO05D009197 1.2e-31 140.2 133 54.9
RcHm_v2.0_Chr4g0430411 Rosa chinensis HOM05D007500 ORTHO05D009197 1.2e-31 140.2 119 57.1
AUR62024115 Chenopodium quinoa HOM05D007500 ORTHO05D009197 1.6e-31 139.8 130 56.9
Prupe.1G226700 Prunus persica HOM05D007500 ORTHO05D009197 3.6e-31 138.7 162 50.0
Actinidia30653 Actinidia chinensis HOM05D007500 ORTHO05D009197 1.8e-30 136.3 114 64.0
HanXRQChr09g0258281 Helianthus annuus HOM05D007500 ORTHO05D009197 1.8e-30 136.3 131 54.2
Migut.K00728 Erythranthe guttata HOM05D007500 ORTHO05D009197 6.7e-30 134.4 134 54.5
Rhsim12G0026300 Rhododendron simsii HOM05D007500 ORTHO05D009197 6.7e-30 134.4 118 59.3
Psat5g095440 Pisum sativum HOM05D007500 ORTHO05D009197 8.7e-30 134.0 140 57.9
DCAR_031200 Daucus carota HOM05D007500 ORTHO05D009197 3.3e-29 132.1 129 55.8
SGA_v2.0_scaffold9G04716 Striga asiatica HOM05D007500 ORTHO05D009197 4.3e-29 131.7 120 55.0
Ah.03g136190 Amaranthus hybridus HOM05D007500 ORTHO05D009197 9.7e-29 130.6 142 50.0
Lj6g0001546 Lotus japonicus HOM05D007500 ORTHO05D009197 1.3e-28 130.2 128 57.8
MBI01_g29007_MAGBIO Magnolia biondii HOM05D007500 ORTHO05D009197 1.3e-28 130.2 115 55.7
Lalb_Chr08g0230661 Lupinus albus HOM05D007500 ORTHO05D009197 1.6e-28 129.8 130 50.8
AUR62005615 Chenopodium quinoa HOM05D007500 ORTHO05D009197 2.2e-28 129.4 124 57.3
unitig_26.g10395 Utricularia gibba HOM05D007500 ORTHO05D009197 2.2e-28 129.4 122 54.1
SalBow2G0500 Salvia bowleyana HOM05D007500 ORTHO05D009197 3.7e-28 128.6 107 60.7
TPR.G28279 Trifolium pratense HOM05D007500 ORTHO05D009197 1.1e-27 127.1 112 61.6
ECA233G2547 Erigeron canadensis HOM05D007500 ORTHO05D009197 3.1e-27 125.6 108 61.1
MD16G1118400 Malus domestica HOM05D007500 ORTHO05D009197 4.1e-27 125.2 133 49.6
MD13G1118300 Malus domestica HOM05D007500 ORTHO05D009197 6.9e-27 124.4 132 50.8
CAN.G43.17 Capsicum annuum HOM05D007500 ORTHO05D009197 2.6e-26 122.5 105 61.0
PSO675G4883 Papaver somniferum HOM05D007500 ORTHO05D009197 4.5e-26 121.7 104 62.5
ATR1120G099 Amborella trichopoda HOM05D007500 ORTHO05D009197 1.7e-25 119.8 117 57.3
CDE06G2379 Ceratophyllum demersum HOM05D007500 ORTHO05D009197 5.0e-25 118.2 124 50.0
Zm00001eb122050 Zea mays HOM05D007500 ORTHO05D009197 1.4e-19 100.1 132 43.2
HPP92_002864 Vanilla planifolia HOM05D007500 ORTHO05D009197 1.0e-17 94.0 108 47.2
Os01g0183400 Oryza sativa ssp. japonica HOM05D007500 ORTHO05D009197 3.8e-17 92.0 117 43.6
SEGI_35529 Sequoiadendron giganteum HOM05D007500 ORTHO05D009197 2.6e-13 79.3 88 46.6
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 1.0e-09 67.4 47 70.2
CDE04G1622 Ceratophyllum demersum HOM05D002489 ORTHO05D002653 6.1e-07 58.2 77 40.3
Pp3c13_23370 Physcomitrium patens HOM05D020496 ORTHO05D009197 6.1e-07 58.2 70 42.9
Pp3c13_23373 Physcomitrium patens HOM05D020496 ORTHO05D009197 6.1e-07 58.2 70 42.9
SMO358G0741 Selaginella moellendorffii HOM05D020496 ORTHO05D009197 8.0e-07 57.8 89 32.6
HPP92_002225 Vanilla planifolia HOM05D002489 ORTHO05D002653 3.0e-06 55.8 75 40.0
CDE07G0320 Ceratophyllum demersum HOM05D002489 ORTHO05D002653 4.0e-06 55.5 77 37.7
ATR0709G046 Amborella trichopoda HOM05D002489 ORTHO05D002653 5.2e-06 55.1 75 41.3
Zm00001eb197620 Zea mays HOM05D002489 ORTHO05D002653 5.2e-06 55.1 75 38.7
Nn1g06292 Nelumbo nucifera HOM05D000789 ORTHO05D000897 6.7e-06 54.7 88 38.6
SGA_v2.0_scaffold29G12136 Striga asiatica HOM05D002489 ORTHO05D002653 6.7e-06 54.7 77 36.4
C01p52760 Brassica napus HOM05D002489 ORTHO05D002653 8.8e-06 54.3 73 39.7
BolC1t05213H Brassica oleracea HOM05D002489 ORTHO05D002653 8.8e-06 54.3 73 39.7
Duzib268G1108 Durio zibethinus HOM05D000789 ORTHO05D000897 8.8e-06 54.3 92 40.2


User provided reference genes

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