Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1519.2 753 100.0
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1210.7 695 86.0
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1182.2 693 84.1
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1172.9 685 83.2
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1171.8 693 83.3
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1167.5 693 83.1
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1164.4 703 83.5
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1164.1 685 82.9
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1156.0 693 81.4
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1154.0 687 82.7
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1153.7 699 82.7
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1151.3 693 81.1
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1151.0 690 83.5
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1151.0 698 81.7
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1149.8 693 81.2
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1149.4 699 82.0
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1149.0 691 82.6
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1148.7 695 82.0
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1148.3 691 82.6
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1145.2 691 81.5
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1145.2 699 79.8
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1144.8 699 81.8
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1144.4 703 81.4
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1140.6 691 81.2
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1137.1 686 81.2
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1136.7 699 80.4
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1135.2 691 80.8
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1133.6 704 80.5
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1132.1 693 81.0
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1131.7 691 81.2
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1130.2 685 81.6
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1128.6 693 80.8
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1128.6 693 80.8
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1124.0 686 81.0
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1123.2 693 79.8
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1119.0 695 79.6
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1116.3 686 80.3
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1115.9 687 79.5
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1115.5 686 80.3
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1115.5 685 79.3
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1114.0 687 80.5
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1113.6 685 80.4
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1113.6 693 78.1
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1110.1 685 78.8
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1104.7 718 77.3
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1102.4 686 79.3
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1101.7 691 78.6
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1101.3 689 78.8
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1100.5 792 72.2
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1100.1 693 76.8
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1099.7 699 77.4
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1099.3 693 78.6
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1099.0 686 78.9
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1096.6 686 79.4
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1093.6 693 77.8
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1092.8 693 78.4
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1091.6 691 77.4
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1091.6 725 74.9
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1091.3 699 78.3
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1091.3 693 77.6
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1089.7 693 78.4
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1087.0 694 77.4
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1086.2 693 77.2
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1085.9 694 77.2
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1085.1 686 77.0
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1085.1 693 77.3
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1083.9 718 75.9
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1082.0 752 72.5
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1082.0 693 77.1
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1082.0 701 77.0
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1080.9 691 76.1
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1080.1 642 83.3
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1080.1 693 77.2
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1078.9 694 76.9
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1078.5 700 76.6
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1078.2 693 76.8
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1075.1 700 76.3
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 5.2e-312 1073.5 700 76.1
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 3.6e-311 1071.2 758 71.6
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 3.6e-311 1071.2 711 76.1
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 4.6e-311 1070.8 647 80.7
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 1.0e-310 1069.7 704 74.7
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 1.8e-310 1068.9 759 71.5
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 2.5e-309 1065.1 679 77.3
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 4.3e-309 1064.3 654 79.7
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 6.4e-305 1050.4 648 79.2
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 1.1e-304 1049.7 686 77.4
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 5.4e-304 1047.3 687 75.8
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 1.3e-302 1042.7 699 74.5
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 8.7e-302 1040.0 659 77.7
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 1.0e-297 1026.5 697 75.3
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 1.3e-297 1026.2 697 75.2
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 3.8e-297 1024.6 694 71.6
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 4.6e-295 1017.7 638 79.0
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 3.7e-292 1008.1 723 71.4
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 1.2e-287 993.0 755 66.2
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 2.7e-287 991.9 736 67.0
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 6.1e-287 990.7 618 79.4
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 3.4e-282 974.9 580 81.7
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 2.9e-281 971.8 686 72.9
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 2.1e-271 939.1 691 66.9
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 1.7e-268 929.5 695 65.8
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 1.5e-261 906.4 549 80.3
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 2.0e-261 906.0 693 65.4
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 2.9e-257 892.1 693 67.7
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 7.2e-256 887.5 659 66.5
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 6.6e-233 811.2 692 64.0
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 3.2e-203 712.6 525 70.3
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 9.6e-192 674.5 388 85.6
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 4.3e-184 649.0 433 72.7
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 4.1e-166 589.3 404 72.0
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 4.5e-141 506.1 325 78.8
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 6.8e-113 412.5 304 65.8
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 2.8e-106 390.6 272 76.5
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 2.3e-97 360.9 250 75.2
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 2.0e-96 357.8 194 89.7
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 2.2e-87 327.8 390 49.5
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 1.3e-68 265.4 275 54.2
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 5.6e-67 260.0 182 73.6
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 2.5e-59 234.6 168 66.7
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 8.5e-55 219.5 139 77.7
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 6.1e-37 160.2 94 83.0
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 1.1e-35 156.0 146 54.1
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 1.1e-35 156.0 83 88.0
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 2.0e-35 155.2 176 50.6
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.2e-34 151.8 112 67.0
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 4.4e-27 127.5 85 68.2
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 6.8e-20 103.6 68 72.1


User provided reference genes

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