Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 0.0e+00 1247.3 618 100.0
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 0.0e+00 1236.1 618 99.0
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 9.1e-273 943.3 628 74.5
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 1.7e-263 912.5 627 72.6
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 6.1e-261 904.0 632 71.8
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 1.0e-260 903.3 628 72.1
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 1.8e-260 902.5 619 73.0
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 2.3e-252 875.5 629 70.6
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 8.8e-252 873.6 628 70.2
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 1.3e-250 869.8 632 69.8
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 3.1e-249 865.1 629 69.8
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 1.0e-247 860.1 630 69.5
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 1.3e-247 859.8 630 67.6
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 2.9e-247 858.6 631 68.3
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 4.0e-244 848.2 628 68.3
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 2.6e-243 845.5 628 67.7
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 1.8e-241 839.3 629 65.8
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 3.6e-237 825.1 630 66.2
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 2.3e-236 822.4 630 66.0
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 2.9e-234 815.5 629 66.8
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 8.6e-231 803.9 608 67.6
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 4.7e-229 798.1 629 64.5
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 3.1e-228 795.4 621 64.9
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 5.2e-228 794.7 629 64.1
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 1.5e-227 793.1 631 63.9
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 2.0e-227 792.7 630 64.6
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 2.6e-227 792.3 632 64.2
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 4.4e-227 791.6 628 64.2
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 5.4e-225 784.6 661 61.6
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.1e-224 782.7 628 62.6
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.7e-224 782.3 628 62.6
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 6.0e-224 781.2 629 63.3
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 3.9e-223 778.5 631 63.9
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 8.6e-223 777.3 637 61.9
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 4.3e-222 775.0 627 62.7
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 4.3e-222 775.0 638 62.5
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 9.5e-222 773.9 629 62.5
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 2.1e-221 772.7 628 62.7
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 1.1e-220 770.4 629 62.0
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 1.1e-220 770.4 577 66.7
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 2.6e-219 765.8 627 61.9
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 3.4e-219 765.4 630 62.7
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 4.4e-219 765.0 631 61.6
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 7.6e-219 764.2 627 61.7
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 1.1e-217 760.4 696 59.1
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 2.4e-217 759.2 620 62.9
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 3.2e-217 758.8 629 61.5
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 5.4e-217 758.1 639 62.0
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 5.4e-217 758.1 629 62.0
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 1.2e-216 756.9 629 63.0
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 1.2e-216 756.9 628 61.5
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 1.6e-216 756.5 632 60.4
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 2.1e-216 756.1 633 61.8
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 6.0e-216 754.6 629 62.3
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 7.8e-216 754.2 635 60.8
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 1.3e-215 753.4 629 62.0
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 2.3e-215 752.7 629 61.8
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 1.6e-213 746.5 630 62.4
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 4.7e-213 745.0 627 61.6
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 1.8e-212 743.0 631 59.1
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 3.4e-211 738.8 628 60.2
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 5.8e-211 738.0 633 60.7
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 2.2e-210 736.1 628 60.0
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 2.2e-210 736.1 628 60.2
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 3.8e-210 735.3 645 58.0
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 1.1e-209 733.8 619 59.9
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 1.9e-209 733.0 628 60.2
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 4.2e-209 731.9 628 60.0
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 5.4e-209 731.5 628 60.2
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 7.1e-209 731.1 628 59.7
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 2.7e-208 729.2 634 60.4
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 1.0e-207 727.2 634 58.0
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 1.3e-207 726.9 628 59.7
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 2.3e-207 726.1 635 58.4
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 3.9e-207 725.3 628 59.9
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 2.1e-205 719.5 628 58.9
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 3.6e-205 718.8 628 58.6
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 4.8e-205 718.4 628 58.8
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 2.4e-204 716.1 693 56.0
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 7.6e-203 711.1 631 57.2
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 9.9e-203 710.7 537 66.5
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 3.8e-202 708.8 629 59.3
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 3.3e-198 695.7 659 56.3
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 4.8e-197 691.8 628 56.1
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 1.4e-196 690.3 628 56.4
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 3.1e-196 689.1 591 60.1
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 1.5e-195 686.8 630 57.1
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 2.6e-195 686.0 628 56.7
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 1.7e-194 683.3 630 56.3
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 3.2e-193 679.1 630 57.0
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 7.1e-193 677.9 628 55.4
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 4.8e-189 665.2 628 54.6
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 1.8e-188 663.3 538 63.4
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 6.9e-188 661.4 668 53.9
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 2.5e-185 652.9 639 53.4
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 3.3e-174 615.9 628 53.2
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 4.5e-171 605.5 629 52.5
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 1.0e-170 604.4 615 53.7
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 3.6e-160 569.3 623 50.7
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.8e-159 567.0 645 48.4
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.8e-159 567.0 645 48.4
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.1e-158 564.3 641 48.5
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 1.3e-154 550.8 482 59.5
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 8.5e-154 548.1 618 49.2
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 9.4e-153 544.7 635 47.7
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 1.8e-143 513.8 525 53.9
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.7e-138 497.3 632 44.9
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 3.3e-137 493.0 652 43.7
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 4.0e-135 486.1 633 41.7
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 8.6e-122 441.8 414 55.8
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.5e-121 441.0 391 57.5
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 2.5e-113 413.7 589 39.7
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 4.1e-108 396.4 410 52.9
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 1.7e-101 374.4 477 44.0
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 4.6e-99 366.3 417 48.9
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 4.2e-76 290.0 758 29.4
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 1.2e-70 271.9 637 31.9
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 2.1e-67 261.2 446 38.8
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 2.2e-64 251.1 217 56.7
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 6.9e-63 246.1 265 50.9
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 1.4e-52 211.8 164 67.1
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 2.6e-49 201.1 257 44.7
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 9.1e-47 192.6 395 34.4
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 1.8e-42 178.3 143 61.5
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.1e-39 169.1 98 80.6
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 4.2e-36 157.1 162 50.0
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 1.8e-34 151.8 97 75.3
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 4.8e-32 143.7 449 28.1
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 5.4e-31 140.2 125 60.0
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 1.6e-30 138.7 160 47.5
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 2.5e-28 131.3 95 63.2
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 6.1e-27 126.7 152 45.4
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 2.8e-24 117.9 148 44.6
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 2.5e-20 104.8 236 33.9
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 3.6e-19 100.9 76 63.2
C02p23310 Brassica napus HOM05D005422 ORTHO05D006578 1.0e-18 99.4 112 49.1
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 1.8e-18 98.6 81 61.7
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 4.0e-18 97.4 133 45.1
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 6.8e-18 96.7 88 52.3
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 4.4e-17 94.0 152 34.9
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 1.7e-16 92.0 164 36.6
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 1.7e-16 92.0 84 51.2
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 5.6e-12 77.0 53 67.9
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 4.7e-11 73.9 65 56.9
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 1.2e-09 69.3 181 29.8
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 5.8e-09 67.0 43 69.8
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 5.8e-09 67.0 54 59.3
Lsat_1_v5_gn_4_120120 Lactuca sativa HOM05D001824 ORTHO05D006578 1.7e-08 65.5 50 58.0
AL1G40980 Arabidopsis lyrata HOM05D002438 ORTHO05D002617 2.2e-08 65.1 39 74.4
arahy.Tifrunner.gnm1.ann1.E05V9C Arachis hypogaea HOM05D000386 ORTHO05D083937 8.3e-08 63.2 90 42.2
Potri.010G096301 Populus trichocarpa HOM05D005422 ORTHO05D006578 7.0e-07 60.1 56 53.6


User provided reference genes

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