Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 1.5e-160 569.7 348 100.0
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 1.5e-160 569.7 348 100.0
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 5.9e-112 408.3 348 78.7
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 1.3e-106 390.6 348 75.9
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.7e-106 389.0 354 73.4
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.1e-105 387.5 354 73.4
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 1.6e-104 383.6 348 75.3
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 4.6e-104 382.1 348 74.7
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 9.5e-102 374.4 348 75.3
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 2.1e-101 373.2 348 73.9
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.3e-100 369.8 348 74.1
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 2.3e-100 369.8 352 71.9
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 3.4e-99 365.9 346 72.0
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 4.4e-99 365.5 358 70.7
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 5.8e-99 365.2 348 71.6
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 7.5e-99 364.8 345 73.9
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 7.5e-99 364.8 348 71.8
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 4.9e-98 362.1 346 72.0
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 2.4e-97 359.8 356 70.2
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 4.6e-96 355.5 348 70.4
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 6.0e-96 355.1 344 71.8
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 7.8e-96 354.8 346 70.5
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.3e-95 354.0 348 72.4
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 1.3e-95 354.0 355 68.7
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.3e-95 353.2 349 69.9
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 5.0e-95 352.1 346 70.5
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 5.0e-95 352.1 348 72.1
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.5e-94 350.5 348 72.4
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 1.5e-94 350.5 354 70.9
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 1.5e-94 350.5 348 70.7
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 4.3e-94 349.0 350 69.7
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 7.3e-94 348.2 351 70.1
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 9.5e-94 347.8 354 70.3
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 1.6e-93 347.1 347 70.6
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 1.6e-93 347.1 348 69.0
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 3.6e-93 345.9 352 69.3
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 8.1e-93 344.7 352 62.5
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 1.1e-92 344.4 369 66.1
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 4.0e-92 342.4 348 68.1
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 5.2e-92 342.0 377 65.0
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 6.8e-92 341.7 348 68.7
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 3.4e-91 339.3 368 66.6
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 3.7e-90 335.9 379 63.9
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 1.4e-89 334.0 349 67.3
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 4.1e-89 332.4 352 67.6
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 5.4e-89 332.0 349 67.0
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 5.4e-89 332.0 346 66.5
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 9.2e-89 331.3 351 67.2
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 9.2e-89 331.3 348 67.5
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 9.2e-89 331.3 349 67.3
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 9.2e-89 331.3 347 68.3
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 1.2e-88 330.9 349 67.9
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 1.2e-88 330.9 350 67.1
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.6e-88 330.5 279 79.2
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 4.6e-88 328.9 335 69.3
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 4.6e-88 328.9 347 68.6
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.0e-87 327.8 350 67.1
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 1.7e-87 327.0 349 67.3
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 2.3e-87 326.6 397 48.1
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 3.9e-87 325.9 348 63.5
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 6.6e-87 325.1 348 66.1
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 8.6e-87 324.7 283 78.4
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.1e-86 324.3 358 65.6
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 1.1e-86 324.3 357 65.3
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 2.5e-86 323.2 353 63.7
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 2.5e-86 323.2 346 63.6
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 7.3e-86 321.6 349 67.0
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 1.2e-85 320.9 345 65.8
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 1.6e-85 320.5 313 67.7
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 2.1e-85 320.1 357 65.3
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.6e-85 319.3 347 66.0
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 6.8e-84 315.1 238 66.4
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 8.9e-84 314.7 347 66.0
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 1.2e-83 314.3 362 65.2
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 2.6e-83 313.2 333 68.2
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 3.4e-83 312.8 346 64.5
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 3.4e-83 312.8 345 64.3
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 3.4e-83 312.8 285 75.8
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 4.4e-83 312.4 346 63.9
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 2.2e-82 310.1 350 64.6
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 3.7e-82 309.3 300 71.7
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 2.3e-79 300.1 348 61.5
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 1.9e-78 297.0 291 71.5
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 7.3e-78 295.0 299 70.2
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 1.2e-77 294.3 348 56.9
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.6e-77 292.7 247 61.9
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 6.2e-77 292.0 228 67.5
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 5.2e-76 288.9 344 62.8
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 5.2e-76 288.9 344 62.2
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 1.3e-74 284.3 343 62.4
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 2.2e-74 283.5 287 61.7
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 2.9e-74 283.1 346 57.8
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 1.1e-73 281.2 422 53.1
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 2.4e-73 280.0 313 68.4
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 7.1e-73 278.5 228 61.8
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 2.7e-72 276.6 247 58.7
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 6.0e-72 275.4 344 60.2
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 3.9e-71 272.7 344 61.0
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 8.7e-71 271.6 165 77.0
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.5e-70 270.8 344 61.0
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 1.5e-70 270.8 344 60.8
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 5.3e-68 262.3 291 68.4
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 1.5e-67 260.8 289 65.7
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 2.0e-67 260.4 349 58.7
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 9.9e-67 258.1 371 41.8
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.3e-66 257.7 347 59.7
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 7.1e-65 251.9 322 61.8
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 3.0e-63 246.5 242 75.6
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 5.1e-63 245.7 165 73.3
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 7.4e-62 241.9 316 44.9
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.6e-61 240.7 344 57.3
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 4.5e-51 206.1 276 62.7
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 1.0e-50 204.9 194 84.0
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 1.7e-50 204.1 187 58.3
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 3.0e-47 193.4 185 54.6
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 5.1e-47 192.6 264 61.0
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 2.5e-46 190.3 194 81.4
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 1.4e-44 184.5 241 66.0
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 3.8e-42 176.4 178 52.2
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 9.3e-41 171.8 214 43.9
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 1.5e-35 154.5 279 52.7
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 1.4e-33 147.9 286 51.4
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 3.2e-33 146.7 134 55.2
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 8.8e-31 138.7 172 44.8
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 5.7e-30 136.0 160 80.6
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 6.3e-29 132.5 171 43.9
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.4e-28 130.6 178 42.1
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.5e-27 126.3 142 89.4
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 7.9e-24 115.5 76 67.1
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 3.9e-23 113.2 107 51.4
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.4e-20 104.8 128 86.7
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.6e-19 101.3 81 63.0
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 3.8e-18 96.7 63 74.6
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 8.5e-18 95.5 134 64.9
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 2.1e-16 90.9 84 54.8
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.1e-16 89.4 122 86.9
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.2e-09 67.0 127 78.0
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 5.5e-09 66.2 56 58.9
Hma1.2p1_0870F.1_g230930 Hydrangea macrophylla HOM05D005436 ORTHO05D006215 1.2e-08 65.1 46 76.1
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 1.8e-07 61.2 41 63.4
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 8.8e-07 58.9 56 53.6
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 2.0e-06 57.8 52 53.8
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 2.6e-06 57.4 37 73.0
FAN09G1413 Fragaria x ananassa HOM05D036052 ORTHO05D006215 3.4e-06 57.0 49 55.1
Zm00001eb344380 Zea mays HOM05D005436 ORTHO05D006215 3.4e-06 57.0 58 46.6
Dinv15974 Davidia involucrata HOM05D046031 ORTHO05D006215 9.8e-06 55.5 37 78.4


User provided reference genes

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