Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.2068 Acer truncatum HOM05D001273 ORTHO05D026236 2.3e-75 285.4 136 100.0
Atru.chr1.3797 Acer truncatum HOM05D001273 ORTHO05D000023 2.5e-34 149.1 85 84.7
Ciclev10031138m.g Citrus clementina HOM05D001273 ORTHO05D000023 8.5e-22 107.5 96 59.4
QL03p059273 Quercus lobata HOM05D001273 ORTHO05D000023 1.4e-21 106.7 99 60.6
CSS0021949 Camellia sinensis var. sinensis HOM05D001273 ORTHO05D000023 2.1e-20 102.8 91 58.2
CiPaw.05G186400 Carya illinoinensis HOM05D001273 ORTHO05D000023 2.1e-20 102.8 98 56.1
Manes.12G026300 Manihot esculenta HOM05D001273 ORTHO05D000023 6.1e-20 101.3 99 53.5
Actinidia08152 Actinidia chinensis HOM05D001273 ORTHO05D000023 1.4e-19 100.1 99 55.6
Manes.13G028000 Manihot esculenta HOM05D001273 ORTHO05D000023 5.1e-19 98.2 92 55.4
Potri.010G042500 Populus trichocarpa HOM05D001273 ORTHO05D000023 6.7e-19 97.8 100 55.0
COL.COLO4_24212 Corchorus olitorius HOM05D001273 ORTHO05D000023 1.5e-18 96.7 98 55.1
PGR119G1021 Punica granatum HOM05D001273 ORTHO05D000023 5.7e-18 94.7 90 53.3
TPR.G24819 Trifolium pratense HOM05D001273 ORTHO05D000023 5.7e-18 94.7 98 50.0
Cfa009177 Carpinus fangiana HOM05D001273 ORTHO05D000023 7.4e-18 94.4 99 53.5
Rhsim12G0043600 Rhododendron simsii HOM05D001273 ORTHO05D000023 7.4e-18 94.4 99 50.5
TAR365G0971 Trochodendron aralioides HOM05D001273 ORTHO05D000023 9.7e-18 94.0 101 51.5
arahy.Tifrunner.gnm1.ann1.EFZ9HZ Arachis hypogaea HOM05D001273 ORTHO05D000023 1.3e-17 93.6 100 51.0
Dinv24821 Davidia involucrata HOM05D001273 ORTHO05D000023 2.2e-17 92.8 99 50.5
Psat4g113640 Pisum sativum HOM05D001273 ORTHO05D000023 2.2e-17 92.8 98 50.0
arahy.Tifrunner.gnm1.ann1.GGT1GB Arachis hypogaea HOM05D001273 ORTHO05D000023 2.8e-17 92.4 100 51.0
Eucgr.H02551 Eucalyptus grandis HOM05D001273 ORTHO05D000023 2.8e-17 92.4 90 53.3
TWI18G0845 Tripterygium wilfordii HOM05D001273 ORTHO05D000023 2.8e-17 92.4 99 52.5
Lj4g0020570 Lotus japonicus HOM05D001273 ORTHO05D000023 4.8e-17 91.7 99 48.5
Medtr8g069825 Medicago truncatula HOM05D001273 ORTHO05D000023 4.8e-17 91.7 98 48.0
Hund25368 Selenicereus undatus HOM05D001273 ORTHO05D000023 6.3e-17 91.3 95 50.5
GSVIVG01013781001 Vitis vinifera HOM05D001273 ORTHO05D000023 6.3e-17 91.3 99 54.5
Hma1.2p1_0160F.1_g071080 Hydrangea macrophylla HOM05D001273 ORTHO05D000023 1.4e-16 90.1 101 51.5
AUR62005411 Chenopodium quinoa HOM05D001273 ORTHO05D000023 1.8e-16 89.7 101 44.6
Duzib251G0822 Durio zibethinus HOM05D001273 ORTHO05D000023 1.8e-16 89.7 98 52.0
Ah.02g130070 Amaranthus hybridus HOM05D001273 ORTHO05D000023 2.4e-16 89.4 95 47.4
Ca_22507_v3 Cicer arietinum L. HOM05D001273 ORTHO05D000023 2.4e-16 89.4 95 50.5
Sabra10G0024900 Salix brachista HOM05D001273 ORTHO05D000023 2.4e-16 89.4 90 54.4
GSVIVG01013770001 Vitis vinifera HOM05D001273 ORTHO05D000023 2.4e-16 89.4 99 53.5
Thecc.02G254400 Theobroma cacao HOM05D001273 ORTHO05D000023 3.1e-16 89.0 98 51.0
AUR62014072 Chenopodium quinoa HOM05D001273 ORTHO05D000023 9.1e-16 87.4 92 51.1
Glyma.08G285000 Glycine max HOM05D001273 ORTHO05D000023 9.1e-16 87.4 101 48.5
EL10Ac6g13705 Beta vulgaris HOM05D001273 ORTHO05D000023 1.5e-15 86.7 92 51.1
Haze_12211 Corylus avellana HOM05D001273 ORTHO05D000023 1.5e-15 86.7 135 41.5
Nitab4.5_0001819g0050 Nicotiana tabacum HOM05D001273 ORTHO05D000023 2.0e-15 86.3 101 47.5
Peaxi162Scf00086g01321 Petunia axillaris HOM05D001273 ORTHO05D000023 2.6e-15 85.9 103 48.5
Solyc11g066300.3 Solanum lycopersicum HOM05D001273 ORTHO05D000023 2.6e-15 85.9 101 46.5
DCAR_024456 Daucus carota HOM05D001273 ORTHO05D000023 3.4e-15 85.5 93 48.4
Lalb_Chr16g0392291 Lupinus albus HOM05D001273 ORTHO05D000023 4.5e-15 85.1 96 46.9
Nitab4.5_0000329g0160 Nicotiana tabacum HOM05D001273 ORTHO05D000023 5.9e-15 84.7 101 46.5
Phvul.003G062100 Phaseolus vulgaris HOM05D001273 ORTHO05D000023 7.7e-15 84.3 102 49.0
AL1G37190 Arabidopsis lyrata HOM05D001273 ORTHO05D000023 1.3e-14 83.6 100 46.0
Lj6A808T43 Lonicera japonica HOM05D001273 ORTHO05D000023 1.3e-14 83.6 88 54.5
Aqoxy5G02781 Aquilegia oxysepala HOM05D001273 ORTHO05D000023 1.7e-14 83.2 93 46.2
Cc11_g15360 Coffea canephora HOM05D001273 ORTHO05D000023 1.7e-14 83.2 99 49.5
MBI19_g32719_MAGBIO Magnolia biondii HOM05D001273 ORTHO05D000023 1.7e-14 83.2 129 41.9
Prupe.1G250700 Prunus persica HOM05D001273 ORTHO05D000023 2.2e-14 82.8 98 46.9
RcHm_v2.0_Chr4g0441911 Rosa chinensis HOM05D001273 ORTHO05D000023 2.2e-14 82.8 99 49.5
Carub.0001s2298 Capsella rubella HOM05D001273 ORTHO05D000023 2.9e-14 82.4 100 45.0
CANSAT01G0845 Cannabis sativa HOM05D001273 ORTHO05D000023 3.8e-14 82.0 100 45.0
CARHR023840 Cardamine hirsuta HOM05D001273 ORTHO05D000023 3.8e-14 82.0 100 45.0
CsaV3_5G031420 Cucumis sativus L. HOM05D001273 ORTHO05D000023 3.8e-14 82.0 101 45.5
Gorai.005G181000 Gossypium raimondii HOM05D001273 ORTHO05D000023 3.8e-14 82.0 98 46.9
MD13G1094700 Malus domestica HOM05D001273 ORTHO05D000023 5.0e-14 81.6 98 46.9
CAN.G546.28 Capsicum annuum HOM05D001273 ORTHO05D000023 8.5e-14 80.9 103 47.6
Sopen11g026040 Solanum pennellii HOM05D001273 ORTHO05D000023 8.5e-14 80.9 101 45.5
Gohir.A03G137900 Gossypium hirsutum HOM05D001273 ORTHO05D000023 1.1e-13 80.5 98 46.9
AT1G23400 Arabidopsis thaliana HOM05D001273 ORTHO05D000023 1.4e-13 80.1 100 43.0
Gohir.D02G160900 Gossypium hirsutum HOM05D001273 ORTHO05D000023 1.4e-13 80.1 98 46.9
SalBow8G1051 Salvia bowleyana HOM05D001273 ORTHO05D000023 1.4e-13 80.1 89 46.1
Sed0022733 Sechium edule HOM05D001273 ORTHO05D000023 1.4e-13 80.1 101 43.6
Sc04g0009280 Simmondsia chinensis HOM05D001273 ORTHO05D000023 1.4e-13 80.1 98 48.0
Sp1g20840 Schrenkiella parvula HOM05D001273 ORTHO05D000023 1.9e-13 79.7 100 44.0
PGSC0003DMG401000410 Solanum tuberosum HOM05D001273 ORTHO05D000023 1.9e-13 79.7 101 44.6
PSO357G0493 Papaver somniferum HOM05D001273 ORTHO05D000023 2.5e-13 79.3 99 46.5
THA.LOC104822974 Tarenaya hassleriana HOM05D001273 ORTHO05D000023 2.5e-13 79.3 95 46.3
Thhalv10007246m.g Eutrema salsugineum HOM05D001273 ORTHO05D000023 3.2e-13 79.0 100 44.0
MELO3C011982.2 Cucumis melo HOM05D001273 ORTHO05D000023 4.2e-13 78.6 101 43.6
ATR0796G079 Amborella trichopoda HOM05D001273 ORTHO05D000023 5.5e-13 78.2 114 43.9
VMungo1215G1312 Vigna mungo HOM05D001273 ORTHO05D026236 5.5e-13 78.2 100 46.0
Lsat_1_v5_gn_3_28500 Lactuca sativa HOM05D001273 ORTHO05D000023 7.2e-13 77.8 85 44.7
A09p41230 Brassica napus HOM05D001273 ORTHO05D000023 9.4e-13 77.4 97 41.2
BraA09t39618Z Brassica rapa HOM05D001273 ORTHO05D000023 9.4e-13 77.4 97 41.2
MSTRG.13361 Avicennia marina HOM05D001273 ORTHO05D000023 1.2e-12 77.0 93 48.4
PSO081G0038 Papaver somniferum HOM05D001273 ORTHO05D000023 1.2e-12 77.0 99 45.5
BolC5t30968H Brassica oleracea HOM05D001273 ORTHO05D000023 2.1e-12 76.3 97 41.2
Aa31LG7G7430 Aethionema arabicum HOM05D001273 ORTHO05D000023 2.7e-12 75.9 103 39.8
FvH4_4g32880 Fragaria vesca HOM05D001273 ORTHO05D000023 2.7e-12 75.9 103 42.7
BcaB07g32335 Brassica carinata HOM05D001273 ORTHO05D000023 3.6e-12 75.5 97 41.2
BcaC05g26257 Brassica carinata HOM05D001273 ORTHO05D000023 3.6e-12 75.5 98 43.9
C05p22700 Brassica napus HOM05D001273 ORTHO05D000023 3.6e-12 75.5 98 43.9
FAN12G3814 Fragaria x ananassa HOM05D001273 ORTHO05D000023 3.6e-12 75.5 103 42.7
ClCG05G025480 Citrullus lanatus HOM05D001273 ORTHO05D000023 4.7e-12 75.1 100 43.0
FAN22G0134 Fragaria x ananassa HOM05D001273 ORTHO05D000023 7.9e-12 74.3 103 42.7
FAN07G0004 Fragaria x ananassa HOM05D001273 ORTHO05D000023 1.4e-11 73.6 104 42.3
Nn3g21887 Nelumbo nucifera HOM05D001273 ORTHO05D000023 1.4e-11 73.6 94 44.7
HanXRQChr17g0539501 Helianthus annuus HOM05D001273 ORTHO05D000023 3.9e-11 72.0 95 43.2
ECA246G0197 Erigeron canadensis HOM05D001273 ORTHO05D000023 1.1e-10 70.5 99 43.4
HPP92_010592 Vanilla planifolia HOM05D001273 ORTHO05D000023 1.1e-10 70.5 96 42.7
Migut.E00179 Erythranthe guttata HOM05D001273 ORTHO05D000023 1.5e-10 70.1 91 47.3
unitig_62.g23667 Utricularia gibba HOM05D001273 ORTHO05D000023 8.2e-09 64.3 92 39.1
VMungo0720G1940 Vigna mungo HOM05D001273 ORTHO05D026236 8.5e-06 54.3 47 61.7


User provided reference genes

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